Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:15:50 (19963): wrapper (7.7.26015): starting
19:15:50 (19963): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:15:50] Arguments: --nthreads 8
[2025-10-12 19:15:50] Threads: 8
[2025-10-12 19:15:50] Checking for CVMFS
[2025-10-12 19:15:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:15:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:15:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:15:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:15:52] 2.11.2.0 25749 220695 138132 151629 2 17 18751738 25165825 4632 130560 0 114352825 99.873 67154245 3165 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 19:15:52] CVMFS is ok
[2025-10-12 19:15:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:15:52] Checking for apptainer binary...
[2025-10-12 19:15:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:15:52] Running /usr/bin/apptainer --version
[2025-10-12 19:15:52] apptainer version 1.3.2-1.el7
[2025-10-12 19:15:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:16:02] cg-vwn424.simple-grid.lan
[2025-10-12 19:16:02] apptainer works
[2025-10-12 19:16:02] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:16:02] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:16:02] Starting ATLAS job with PandaID=6839774626
[2025-10-12 19:16:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:39:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:39:22] 2025-10-12 21:38:14,630 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:39:22] 2025-10-12 21:38:14,637 | INFO     | sum of square deviations: 4560048290.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,639 | INFO     | sum of deviations: 89474976167.99997
[2025-10-12 23:39:22] 2025-10-12 21:38:14,639 | INFO     | mean x: 1760297513.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,640 | INFO     | mean y: 2431214.9020408164
[2025-10-12 23:39:22] 2025-10-12 21:38:14,640 | INFO     | -- intersect: -34537242053.39675
[2025-10-12 23:39:22] 2025-10-12 21:38:14,640 | INFO     | intersect: -34537242053.39675
[2025-10-12 23:39:22] 2025-10-12 21:38:14,640 | INFO     | chi2: 5.769193277315116
[2025-10-12 23:39:22] 2025-10-12 21:38:14,641 | INFO     | sum of square deviations: 4286517580.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,643 | INFO     | sum of deviations: 103549433578.00003
[2025-10-12 23:39:22] 2025-10-12 21:38:14,643 | INFO     | mean x: 1760297360.5
[2025-10-12 23:39:22] 2025-10-12 21:38:14,644 | INFO     | mean y: 2438912.2333333334
[2025-10-12 23:39:22] 2025-10-12 21:38:14,644 | INFO     | -- intersect: -42521076087.23706
[2025-10-12 23:39:22] 2025-10-12 21:38:14,644 | INFO     | intersect: -42521076087.23706
[2025-10-12 23:39:22] 2025-10-12 21:38:14,644 | INFO     | chi2: 5.037640065749883
[2025-10-12 23:39:22] 2025-10-12 21:38:14,644 | INFO     | current chi2=5.037640065749883 (change=12.680338071559378 %)
[2025-10-12 23:39:22] 2025-10-12 21:38:14,644 | INFO     | right removable region: 239
[2025-10-12 23:39:22] 2025-10-12 21:38:14,645 | INFO     | sum of square deviations: 4286517580.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,653 | INFO     | sum of deviations: 9711592626.500006
[2025-10-12 23:39:22] 2025-10-12 21:38:14,654 | INFO     | mean x: 1760297665.5
[2025-10-12 23:39:22] 2025-10-12 21:38:14,654 | INFO     | mean y: 2475633.779166667
[2025-10-12 23:39:22] 2025-10-12 21:38:14,654 | INFO     | -- intersect: -3985678738.5434995
[2025-10-12 23:39:22] 2025-10-12 21:38:14,654 | INFO     | intersect: -3985678738.5434995
[2025-10-12 23:39:22] 2025-10-12 21:38:14,654 | INFO     | chi2: 1.5763383984133053
[2025-10-12 23:39:22] 2025-10-12 21:38:14,655 | INFO     | current chi2=1.5763383984133053 (change=72.6766235305102 %)
[2025-10-12 23:39:22] 2025-10-12 21:38:14,655 | INFO     | sum of square deviations: 4024149870.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,657 | INFO     | sum of deviations: -18005201457.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,657 | INFO     | mean x: 1760297818.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,657 | INFO     | mean y: 2491612.1914893617
[2025-10-12 23:39:22] 2025-10-12 21:38:14,658 | INFO     | -- intersect: 7878569258.724948
[2025-10-12 23:39:22] 2025-10-12 21:38:14,658 | INFO     | intersect: 7878569258.724948
[2025-10-12 23:39:22] 2025-10-12 21:38:14,658 | INFO     | chi2: 0.8544343805374626
[2025-10-12 23:39:22] 2025-10-12 21:38:14,658 | INFO     | current chi2=0.8544343805374626 (change=45.79625914096171 %)
[2025-10-12 23:39:22] 2025-10-12 21:38:14,659 | INFO     | sum of square deviations: 3772712597.5
[2025-10-12 23:39:22] 2025-10-12 21:38:14,661 | INFO     | sum of deviations: -12628611497.999998
[2025-10-12 23:39:22] 2025-10-12 21:38:14,661 | INFO     | mean x: 1760297970.5
[2025-10-12 23:39:22] 2025-10-12 21:38:14,661 | INFO     | mean y: 2488327.9826086955
[2025-10-12 23:39:22] 2025-10-12 21:38:14,661 | INFO     | -- intersect: 5894831997.334264
[2025-10-12 23:39:22] 2025-10-12 21:38:14,661 | INFO     | intersect: 5894831997.334264
[2025-10-12 23:39:22] 2025-10-12 21:38:14,662 | INFO     | chi2: 0.8290815774512283
[2025-10-12 23:39:22] 2025-10-12 21:38:14,662 | INFO     | current chi2=0.8290815774512283 (change=2.9672030601444916 %)
[2025-10-12 23:39:22] 2025-10-12 21:38:14,662 | INFO     | left removable region: 30
[2025-10-12 23:39:22] 2025-10-12 21:38:14,663 | INFO     | sum of square deviations: 2830787960.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,664 | INFO     | sum of deviations: 6467971153.999999
[2025-10-12 23:39:22] 2025-10-12 21:38:14,664 | INFO     | mean x: 1760298245.0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,665 | INFO     | mean y: 2495269.8421052634
[2025-10-12 23:39:22] 2025-10-12 21:38:14,665 | INFO     | -- intersect: -4019550334.4131927
[2025-10-12 23:39:22] 2025-10-12 21:38:14,665 | INFO     | intersect: -4019550334.4131927
[2025-10-12 23:39:22] 2025-10-12 21:38:14,665 | INFO     | chi2: 0.00032706622142667234
[2025-10-12 23:39:22] 2025-10-12 21:38:14,665 | INFO     | -- intersect: -4019550334.4131927
[2025-10-12 23:39:22] 2025-10-12 21:38:14,665 | INFO     | current memory leak: 2.28 B/s (using 209 data points, chi2=0.00)
[2025-10-12 23:39:22] 2025-10-12 21:38:14,666 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-12 23:39:22] 2025-10-12 21:38:14,666 | INFO     | ..............................
[2025-10-12 23:39:22] 2025-10-12 21:38:14,666 | INFO     | . Timing measurements:
[2025-10-12 23:39:22] 2025-10-12 21:38:14,667 | INFO     | . get job = 0 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,667 | INFO     | . initial setup = 14 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,667 | INFO     | . payload setup = 135 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,667 | INFO     | . stage-in = 0 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,667 | INFO     | . payload execution = 15076 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,667 | INFO     | . stage-out = 3 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,672 | INFO     | . log creation = 1 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,673 | INFO     | ..............................
[2025-10-12 23:39:22] 2025-10-12 21:38:14,811 | INFO     | 
[2025-10-12 23:39:22] 2025-10-12 21:38:14,811 | INFO     | job summary report
[2025-10-12 23:39:22] 2025-10-12 21:38:14,811 | INFO     | --------------------------------------------------
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | PanDA job id: 6839774626
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | task id: 46676269
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | errors: (none)
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | pilot state: finished 
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | transexitcode: 0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | exeerrorcode: 0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | exeerrordiag: 
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | exitcode: 0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,812 | INFO     | exitmsg: OK
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | cpuconsumptiontime: 55863 s
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | nevents: 400
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | neventsw: 0
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | pid: 30315
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | pgrp: 30315
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | corecount: 8
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | event service: False
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348913, 13: 2348913, 23: 2348969, 34: 2348997, 45: 2349153, 56: 2349181, 66: 2349209, 77: 2349237, 88: 2349293, 92: 2349863, 98
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | --------------------------------------------------
[2025-10-12 23:39:22] 2025-10-12 21:38:14,813 | INFO     | 
[2025-10-12 23:39:22] 2025-10-12 21:38:14,814 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-10-12 23:39:22] 2025-10-12 21:38:15,111 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,111 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,111 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,113 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:39:22] 2025-10-12 21:38:15,114 | INFO     | job 6839774626 has completed (purged errors)
[2025-10-12 23:39:22] 2025-10-12 21:38:15,114 | INFO     | overall cleanup function is called
[2025-10-12 23:39:22] 2025-10-12 21:38:16,123 | INFO     | --- collectZombieJob: --- 10, [30315]
[2025-10-12 23:39:22] 2025-10-12 21:38:16,124 | INFO     | zombie collector waiting for pid 30315
[2025-10-12 23:39:22] 2025-10-12 21:38:16,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:39:22] 2025-10-12 21:38:16,124 | INFO     | collected zombie processes
[2025-10-12 23:39:22] 2025-10-12 21:38:16,124 | INFO     | will attempt to kill all subprocesses of pid=30315
[2025-10-12 23:39:22] 2025-10-12 21:38:16,292 | INFO     | process IDs to be killed: [30315] (in reverse order)
[2025-10-12 23:39:22] 2025-10-12 21:38:17,213 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:39:22] 2025-10-12 21:38:17,214 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:39:22] 2025-10-12 21:38:17,217 | INFO     | did not find any defunct processes belonging to 30315
[2025-10-12 23:39:22] 2025-10-12 21:38:17,220 | INFO     | did not find any defunct processes belonging to 30315
[2025-10-12 23:39:22] 2025-10-12 21:38:17,221 | INFO     | ready for new job
[2025-10-12 23:39:22] 2025-10-12 21:38:17,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:39:22] 2025-10-12 21:38:17,223 | INFO     | ***************************************
[2025-10-12 23:39:22] 2025-10-12 21:38:17,223 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:39:22] 2025-10-12 21:38:17,223 | INFO     | ***************************************
[2025-10-12 23:39:22] 2025-10-12 21:38:17,224 | INFO     | 
[2025-10-12 23:39:22] 2025-10-12 21:38:17,224 | INFO     | pilot is running in a VM
[2025-10-12 23:39:22] 2025-10-12 21:38:17,225 | INFO     | architecture information:
[2025-10-12 23:39:22] 2025-10-12 21:38:17,233 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:39:22] 2025-10-12 21:38:17,417 | INFO     | cat /etc/os-release:
[2025-10-12 23:39:22] NAME="CentOS Linux"
[2025-10-12 23:39:22] VERSION="7 (Core)"
[2025-10-12 23:39:22] ID="centos"
[2025-10-12 23:39:22] ID_LIKE="rhel fedora"
[2025-10-12 23:39:22] VERSION_ID="7"
[2025-10-12 23:39:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:39:22] ANSI_COLOR="0;31"
[2025-10-12 23:39:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:39:22] HOME_URL="https://www.centos.org/"
[2025-10-12 23:39:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:39:22] 
[2025-10-12 23:39:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:39:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:39:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:39:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:39:22] 
[2025-10-12 23:39:22] 2025-10-12 21:38:17,417 | INFO     | ***************************************
[2025-10-12 23:39:22] 2025-10-12 21:38:17,920 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-10-12 23:39:22] 2025-10-12 21:38:18,165 | INFO     | sufficient remaining disk space (495288582144 B)
[2025-10-12 23:39:22] 2025-10-12 21:38:18,165 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:39:22] 2025-10-12 21:38:18,165 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:39:22] 2025-10-12 21:38:18,166 | INFO     | update_server=False
[2025-10-12 23:39:22] 2025-10-12 21:38:18,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:39:22] 2025-10-12 21:38:18,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:39:22] 2025-10-12 21:38:18,408 | INFO     | all payload control threads have been joined
[2025-10-12 23:39:22] 2025-10-12 21:38:18,568 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:39:22] 2025-10-12 21:38:18,569 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:39:22] 2025-10-12 21:38:18,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:39:22] 2025-10-12 21:38:18,569 | INFO     | will abort loop
[2025-10-12 23:39:22] 2025-10-12 21:38:18,672 | INFO     | all data control threads have been joined
[2025-10-12 23:39:22] 2025-10-12 21:38:19,171 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,181 | INFO     | all job control threads have been joined
[2025-10-12 23:39:22] 2025-10-12 21:38:19,263 | INFO     | [job] validate thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,376 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,413 | INFO     | [payload] control thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,536 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,574 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,669 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,678 | INFO     | [data] control thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:19,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:39:22] 2025-10-12 21:38:19,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:39:22] 2025-10-12 21:38:20,013 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:20,173 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:20,187 | INFO     | [job] control thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:20,392 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:20,412 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:20,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:20,831 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:23,907 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:39:22] 2025-10-12 21:38:47,714 | INFO     | PID=23706 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:39:22] 2025-10-12 21:38:47,715 | INFO     | .. there are 9 such processes running
[2025-10-12 23:39:22] 2025-10-12 21:38:47,715 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:39:22] 2025-10-12 21:38:47,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:39:22] 2025-10-12 21:38:47,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:39:22] 2025-10-12 21:39:13,190 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:39:22] 2025-10-12 21:39:14,021 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140130935740224)>', '<ExcThread(monitor, started 140130287351552)>']
[2025-10-12 23:39:22] 2025-10-12 21:39:14,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:39:22] 2025-10-12 21:39:14,877 | INFO     | [monitor] control thread has ended
[2025-10-12 23:39:22] 2025-10-12 21:39:19,047 | INFO     | all workflow threads have been joined
[2025-10-12 23:39:22] 2025-10-12 21:39:19,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:39:22] 2025-10-12 21:39:19,048 | INFO     | traces error code: 0
[2025-10-12 23:39:22] 2025-10-12 21:39:19,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:39:22] 2025-10-12 21:39:19,417 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:39:22] 2025-10-12 21:39:19,474 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:39:22] 2025-10-12 21:39:19,580 [wrapper] pilotpid: 23706
[2025-10-12 23:39:22] 2025-10-12 21:39:19,637 [wrapper] Pilot exit status: 0
[2025-10-12 23:39:22] 2025-10-12 21:39:19,999 [wrapper] pandaids: 6839774626
[2025-10-12 23:39:22] 2025-10-12 21:39:21,046 [wrapper] cleanup supervisor_pilot  7385 23707
[2025-10-12 23:39:22] 2025-10-12 21:39:21,067 [wrapper] Test setup, not cleaning
[2025-10-12 23:39:22] 2025-10-12 21:39:21,144 [wrapper] apfmon messages muted
[2025-10-12 23:39:22] 2025-10-12 21:39:21,176 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:39:22] 2025-10-12 21:39:21,254 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:39:22]  *** Error codes and diagnostics ***
[2025-10-12 23:39:22]     "exeErrorCode": 0,
[2025-10-12 23:39:22]     "exeErrorDiag": "",
[2025-10-12 23:39:22]     "pilotErrorCode": 0,
[2025-10-12 23:39:22]     "pilotErrorDiag": "",
[2025-10-12 23:39:22]  *** Listing of results directory ***
[2025-10-12 23:39:22] total 415988
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc    557409 Oct 12 10:37 pilot3.tar.gz
[2025-10-12 23:39:22] -rwx------. 1 boinc boinc     36292 Oct 12 10:38 runpilot2-wrapper.sh
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc      5112 Oct 12 10:38 queuedata.json
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc       100 Oct 12 19:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:39:22] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 19:15 run_atlas
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc       105 Oct 12 19:15 job.xml
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc      6390 Oct 12 19:15 init_data.xml
[2025-10-12 23:39:22] -rw-r--r--. 2 boinc boinc 221901291 Oct 12 19:15 EVNT.46676267._003542.pool.root.1
[2025-10-12 23:39:22] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:15 start_atlas.sh
[2025-10-12 23:39:22] drwxrwx--x. 2 boinc boinc        68 Oct 12 19:15 shared
[2025-10-12 23:39:22] -rw-r--r--. 2 boinc boinc    569683 Oct 12 19:15 input.tar.gz
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc         0 Oct 12 19:15 boinc_lockfile
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc      2550 Oct 12 19:16 pandaJob.out
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc    975528 Oct 12 19:19 agis_schedconf.cvmfs.json
[2025-10-12 23:39:22] drwx------. 5 boinc boinc      4096 Oct 12 19:19 pilot3
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc 195053491 Oct 12 23:35 HITS.46676269._074518.pool.root.1
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc       531 Oct 12 23:35 boinc_task_state.xml
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc      1020 Oct 12 23:36 memory_monitor_summary.json
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc   1560580 Oct 12 23:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc    481611 Oct 12 23:36 log.46676269._074518.job.log.tgz.1
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc      7784 Oct 12 23:38 heartbeat.json
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc        95 Oct 12 23:38 pilot_heartbeat.json
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc        28 Oct 12 23:39 wrapper_checkpoint.txt
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc      8192 Oct 12 23:39 boinc_mmap_file
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc      5070 Oct 12 23:39 pilotlog.txt
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc   2081019 Oct 12 23:39 log.46676269._074518.job.log.1
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc       357 Oct 12 23:39 output.list
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc       620 Oct 12 23:39 runtime_log
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc   2580480 Oct 12 23:39 result.tar.gz
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc      8703 Oct 12 23:39 runtime_log.err
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc       657 Oct 12 23:39 P3INDmNm6R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5BjNDm4AtYTo.diag
[2025-10-12 23:39:22] -rw-r--r--. 1 boinc boinc     20651 Oct 12 23:39 stderr.txt
[2025-10-12 23:39:22] HITS file was successfully produced:
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc 195053491 Oct 12 23:35 shared/HITS.pool.root.1
[2025-10-12 23:39:22]  *** Contents of shared directory: ***
[2025-10-12 23:39:22] total 410284
[2025-10-12 23:39:22] -rw-r--r--. 2 boinc boinc 221901291 Oct 12 19:15 ATLAS.root_0
[2025-10-12 23:39:22] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:15 start_atlas.sh
[2025-10-12 23:39:22] -rw-r--r--. 2 boinc boinc    569683 Oct 12 19:15 input.tar.gz
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc 195053491 Oct 12 23:35 HITS.pool.root.1
[2025-10-12 23:39:22] -rw-------. 1 boinc boinc   2580480 Oct 12 23:39 result.tar.gz
23:39:23 (19963): run_atlas exited; CPU time 56089.044132
23:39:23 (19963): called boinc_finish(0)

</stderr_txt>
]]>

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