Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:25:56 (102238): wrapper (7.7.26015): starting
02:25:56 (102238): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 02:25:56] Arguments: --nthreads 3
[2025-10-13 02:25:56] Threads: 3
[2025-10-13 02:25:56] Checking for CVMFS
[2025-10-13 02:25:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:25:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:25:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:25:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:25:56] 2.9.2.0 3062 340 59532 151642 0 56 27883748 36864000 0 130560 0 262736 99.990 13316 408 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 02:25:56] CVMFS is ok
[2025-10-13 02:25:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:25:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:25:56] Further information can be found at the LHC@home message board.
[2025-10-13 02:25:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:25:56] Checking for apptainer binary...
[2025-10-13 02:25:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:25:56] Running /usr/bin/apptainer --version
[2025-10-13 02:25:56] apptainer version 1.4.1-1.1
[2025-10-13 02:25:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:25:56] cosA125
[2025-10-13 02:25:56] apptainer works
[2025-10-13 02:25:56] Set ATHENA_PROC_NUMBER=3
[2025-10-13 02:25:56] Set ATHENA_CORE_NUMBER=3
[2025-10-13 02:25:56] Starting ATLAS job with PandaID=6839591092
[2025-10-13 02:25:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:49:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:49:16] 2025-10-13 01:48:36,373 | INFO     |  -- lfn=log.46676269._072524.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 03:49:16] 2025-10-13 01:48:36,373 | INFO     | stage-out finished correctly
[2025-10-13 03:49:16] 2025-10-13 01:48:36,753 | INFO     | time since job start (4954s) is within the limit (172800.0s)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,459 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 03:49:16] 2025-10-13 01:48:37,817 | WARNING  | process 112396 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 03:49:16] 2025-10-13 01:48:37,818 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6839591092/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,818 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6839591092/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,818 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 03:49:16] 2025-10-13 01:48:37,818 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 03:49:16] 2025-10-13 01:48:37,818 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1934738 B
[2025-10-13 03:49:16] 2025-10-13 01:48:37,818 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15793 B
[2025-10-13 03:49:16] 2025-10-13 01:48:37,819 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:49:16] 2025-10-13 01:48:37,828 | INFO     | sufficient remaining disk space (331988598784 B)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,828 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,829 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6839591092: 2233270 B (within 2537553920 B limit)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,829 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6839591092/HITS.46676269._072524.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,829 | INFO     | total size of present files: 0 B (workdir size: 2233270 B)
[2025-10-13 03:49:16] 2025-10-13 01:48:37,829 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6839591092/HITS.46676269._072524.pool.root.1 since it does not exist
[2025-10-13 03:49:16] 2025-10-13 01:48:37,865 | INFO     | number of running child processes to parent process 112396: 1
[2025-10-13 03:49:16] 2025-10-13 01:48:37,865 | INFO     | maximum number of monitored processes: 6
[2025-10-13 03:49:16] 2025-10-13 01:48:38,759 | INFO     | time since job start (4956s) is within the limit (172800.0s)
[2025-10-13 03:49:16] 2025-10-13 01:48:38,819 | INFO     | job 6839591092 has state=finished
[2025-10-13 03:49:16] 2025-10-13 01:48:38,819 | INFO     | preparing for final server update for job 6839591092 in state='finished'
[2025-10-13 03:49:16] 2025-10-13 01:48:38,820 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:49:16] 2025-10-13 01:48:38,820 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:49:16] 2025-10-13 01:48:38,820 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:49:16] 2025-10-13 01:48:38,820 | INFO     | job 6839591092 has finished - writing final server update
[2025-10-13 03:49:16] 2025-10-13 01:48:38,820 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:49:16] 2025-10-13 01:48:38,821 | INFO     | executing command: lscpu
[2025-10-13 03:49:16] 2025-10-13 01:48:38,836 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:49:16] 2025-10-13 01:48:40,368 | INFO     | monitor loop #381: job 0:6839591092 is in state 'finished'
[2025-10-13 03:49:16] 2025-10-13 01:48:40,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:49:16] 2025-10-13 01:48:40,765 | INFO     | time since job start (4958s) is within the limit (172800.0s)
[2025-10-13 03:49:16] 2025-10-13 01:48:42,771 | INFO     | time since job start (4960s) is within the limit (172800.0s)
[2025-10-13 03:49:16] 2025-10-13 01:48:42,871 | INFO     | monitor loop #382: job 0:6839591092 is in state 'finished'
[2025-10-13 03:49:16] 2025-10-13 01:48:42,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:49:16] 2025-10-13 01:48:44,006 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 03:49:16] 2025-10-13 01:48:44,007 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3507.5471666666667
[2025-10-13 03:49:16] 2025-10-13 01:48:44,008 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6839591092/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:49:16] 2025-10-13 01:48:44,008 | INFO     | extracted standard info from prmon json
[2025-10-13 03:49:16] 2025-10-13 01:48:44,008 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:49:16] 2025-10-13 01:48:44,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:49:16] 2025-10-13 01:48:44,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:49:16] 2025-10-13 01:48:44,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:49:16] 2025-10-13 01:48:44,009 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:49:16] 2025-10-13 01:48:44,009 | INFO     | sum of square deviations: 125630262.5
[2025-10-13 03:49:16] 2025-10-13 01:48:44,009 | INFO     | sum of deviations: -10685674542.499998
[2025-10-13 03:49:16] 2025-10-13 01:48:44,009 | INFO     | mean x: 1760317712.5
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | mean y: 2493698.0135135134
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | -- intersect: 149729014942.63068
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | intersect: 149729014942.63068
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | chi2: 0.044688447375457144
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | -- intersect: 149729014942.63068
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | current memory leak: -85.06 B/s (using 74 data points, chi2=0.04)
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | could have reported an average CPU frequency of 3776 MHz (6 samples)
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | ..............................
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . Timing measurements:
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . get job = 0 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . initial setup = 1 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . payload setup = 2 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . stage-in = 0 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . payload execution = 4934 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . stage-out = 0 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | . log creation = 0 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,010 | INFO     | ..............................
[2025-10-13 03:49:16] 2025-10-13 01:48:44,041 | INFO     | 
[2025-10-13 03:49:16] 2025-10-13 01:48:44,041 | INFO     | job summary report
[2025-10-13 03:49:16] 2025-10-13 01:48:44,041 | INFO     | --------------------------------------------------
[2025-10-13 03:49:16] 2025-10-13 01:48:44,041 | INFO     | PanDA job id: 6839591092
[2025-10-13 03:49:16] 2025-10-13 01:48:44,041 | INFO     | task id: 46676269
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | errors: (none)
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | pilot state: finished 
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | transexitcode: 0
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | exeerrorcode: 0
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | exeerrordiag: 
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | exitcode: 0
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | exitmsg: OK
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | cpuconsumptiontime: 14229 s
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | nevents: 400
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | neventsw: 0
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | pid: 112396
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | pgrp: 112396
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | corecount: 3
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | event service: False
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | sizes: {0: 2348860, 3: 2349122, 11: 2349150, 4940: 2375563, 4941: 2384622, 4942: 2384622, 4949: 2384972}
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | --------------------------------------------------
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | 
[2025-10-13 03:49:16] 2025-10-13 01:48:44,042 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 03:49:16] 2025-10-13 01:48:44,053 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,053 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,053 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,053 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,053 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,053 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,053 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | job 6839591092 has completed (purged errors)
[2025-10-13 03:49:16] 2025-10-13 01:48:44,054 | INFO     | overall cleanup function is called
[2025-10-13 03:49:16] 2025-10-13 01:48:45,057 | INFO     | --- collectZombieJob: --- 10, [112396]
[2025-10-13 03:49:16] 2025-10-13 01:48:45,057 | INFO     | zombie collector waiting for pid 112396
[2025-10-13 03:49:16] 2025-10-13 01:48:45,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:49:16] 2025-10-13 01:48:45,057 | INFO     | collected zombie processes
[2025-10-13 03:49:16] 2025-10-13 01:48:45,057 | INFO     | will attempt to kill all subprocesses of pid=112396
[2025-10-13 03:49:16] 2025-10-13 01:48:45,099 | INFO     | process IDs to be killed: [112396] (in reverse order)
[2025-10-13 03:49:16] 2025-10-13 01:48:45,122 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:49:16] 2025-10-13 01:48:45,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:49:16] 2025-10-13 01:48:45,123 | INFO     | did not find any defunct processes belonging to 112396
[2025-10-13 03:49:16] 2025-10-13 01:48:45,124 | INFO     | did not find any defunct processes belonging to 112396
[2025-10-13 03:49:16] 2025-10-13 01:48:45,125 | INFO     | ready for new job
[2025-10-13 03:49:16] 2025-10-13 01:48:45,125 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:49:16] 2025-10-13 01:48:45,125 | INFO     | ***************************************
[2025-10-13 03:49:16] 2025-10-13 01:48:45,125 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:49:16] 2025-10-13 01:48:45,125 | INFO     | ***************************************
[2025-10-13 03:49:16] 2025-10-13 01:48:45,125 | INFO     | 
[2025-10-13 03:49:16] 2025-10-13 01:48:45,126 | INFO     | architecture information:
[2025-10-13 03:49:16] 2025-10-13 01:48:45,126 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:49:16] 2025-10-13 01:48:45,134 | INFO     | cat /etc/os-release:
[2025-10-13 03:49:16] NAME="CentOS Linux"
[2025-10-13 03:49:16] VERSION="7 (Core)"
[2025-10-13 03:49:16] ID="centos"
[2025-10-13 03:49:16] ID_LIKE="rhel fedora"
[2025-10-13 03:49:16] VERSION_ID="7"
[2025-10-13 03:49:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:49:16] ANSI_COLOR="0;31"
[2025-10-13 03:49:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:49:16] HOME_URL="https://www.centos.org/"
[2025-10-13 03:49:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:49:16] 
[2025-10-13 03:49:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:49:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:49:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:49:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:49:16] 
[2025-10-13 03:49:16] 2025-10-13 01:48:45,134 | INFO     | ***************************************
[2025-10-13 03:49:16] 2025-10-13 01:48:45,637 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:49:16] 2025-10-13 01:48:45,650 | INFO     | sufficient remaining disk space (331990695936 B)
[2025-10-13 03:49:16] 2025-10-13 01:48:45,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:49:16] 2025-10-13 01:48:45,651 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:49:16] 2025-10-13 01:48:45,651 | INFO     | update_server=False
[2025-10-13 03:49:16] 2025-10-13 01:48:45,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:49:16] 2025-10-13 01:48:45,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:49:16] 2025-10-13 01:48:45,853 | INFO     | all data control threads have been joined
[2025-10-13 03:49:16] 2025-10-13 01:48:45,889 | INFO     | all payload control threads have been joined
[2025-10-13 03:49:16] 2025-10-13 01:48:46,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:49:16] 2025-10-13 01:48:46,381 | INFO     | aborting loop
[2025-10-13 03:49:16] 2025-10-13 01:48:46,617 | INFO     | all job control threads have been joined
[2025-10-13 03:49:16] 2025-10-13 01:48:46,656 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:46,656 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:46,859 | INFO     | [data] control thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:46,875 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:46,895 | INFO     | [payload] control thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:46,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:49:16] 2025-10-13 01:48:47,386 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:47,393 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:47,594 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:47,623 | INFO     | [job] control thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:47,904 | INFO     | [job] validate thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:47,999 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:47,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:49:16] 2025-10-13 01:48:48,038 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:48,068 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:48,924 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:52,006 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:48:56,305 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:49:16] 2025-10-13 01:48:57,311 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:49:16] 2025-10-13 01:49:07,781 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:49:16] 2025-10-13 01:49:08,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795882981184)>', '<ExcThread(monitor, started 139795397334784)>']
[2025-10-13 03:49:16] 2025-10-13 01:49:13,277 | INFO     | all workflow threads have been joined
[2025-10-13 03:49:16] 2025-10-13 01:49:13,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:49:16] 2025-10-13 01:49:13,277 | INFO     | traces error code: 0
[2025-10-13 03:49:16] 2025-10-13 01:49:13,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:49:16] 2025-10-13 01:49:15,881 | INFO     | PID=105961 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 03:49:16] 2025-10-13 01:49:15,881 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:49:16] 2025-10-13 01:49:15,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:49:16] 2025-10-13 01:49:15,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:49:16] 2025-10-13 01:49:15,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:49:16] 2025-10-13 01:49:15,881 | INFO     | [monitor] control thread has ended
[2025-10-13 03:49:16] 2025-10-13 01:49:15,927 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:49:16] 2025-10-13 01:49:15,930 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:49:16] 2025-10-13 01:49:15,932 [wrapper] pilotpid: 105961
[2025-10-13 03:49:16] 2025-10-13 01:49:15,934 [wrapper] Pilot exit status: 0
[2025-10-13 03:49:16] 2025-10-13 01:49:15,941 [wrapper] pandaids: 6839591092
[2025-10-13 03:49:16] 2025-10-13 01:49:15,957 [wrapper] cleanup supervisor_pilot  124343 105962
[2025-10-13 03:49:16] 2025-10-13 01:49:15,959 [wrapper] Test setup, not cleaning
[2025-10-13 03:49:16] 2025-10-13 01:49:15,961 [wrapper] apfmon messages muted
[2025-10-13 03:49:16] 2025-10-13 01:49:15,963 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:49:16] 2025-10-13 01:49:15,965 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:49:16]  *** Error codes and diagnostics ***
[2025-10-13 03:49:16]     "exeErrorCode": 0,
[2025-10-13 03:49:16]     "exeErrorDiag": "",
[2025-10-13 03:49:16]     "pilotErrorCode": 0,
[2025-10-13 03:49:16]     "pilotErrorDiag": "",
[2025-10-13 03:49:16]  *** Listing of results directory ***
[2025-10-13 03:49:16] total 408484
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:28 queuedata.json
[2025-10-13 03:49:16] -rwx------ 1 boinc boinc     36292 Oct 12 08:28 runpilot2-wrapper.sh
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:49:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:25 run_atlas
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:25 job.xml
[2025-10-13 03:49:16] -rw-r--r-- 2 boinc boinc 219107996 Oct 13 02:25 EVNT.46676267._004350.pool.root.1
[2025-10-13 03:49:16] -rw-r--r-- 2 boinc boinc    569677 Oct 13 02:25 input.tar.gz
[2025-10-13 03:49:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:25 start_atlas.sh
[2025-10-13 03:49:16] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:25 shared
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:25 boinc_setup_complete
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc      6438 Oct 13 02:25 init_data.xml
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:25 boinc_lockfile
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:25 pandaJob.out
[2025-10-13 03:49:16] -rw------- 1 boinc boinc    975603 Oct 13 02:26 agis_schedconf.cvmfs.json
[2025-10-13 03:49:16] -rw------- 1 boinc boinc   1560580 Oct 13 02:26 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:49:16] drwx------ 5 boinc boinc      4096 Oct 13 02:26 pilot3
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:48 boinc_task_state.xml
[2025-10-13 03:49:16] -rw------- 1 boinc boinc 193323885 Oct 13 03:48 HITS.46676269._072524.pool.root.1
[2025-10-13 03:49:16] -rw------- 1 boinc boinc        95 Oct 13 03:48 pilot_heartbeat.json
[2025-10-13 03:49:16] -rw------- 1 boinc boinc      1020 Oct 13 03:48 memory_monitor_summary.json
[2025-10-13 03:49:16] -rw------- 1 boinc boinc    245968 Oct 13 03:48 log.46676269._072524.job.log.tgz.1
[2025-10-13 03:49:16] -rw------- 1 boinc boinc      7764 Oct 13 03:48 heartbeat.json
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:48 boinc_mmap_file
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:48 wrapper_checkpoint.txt
[2025-10-13 03:49:16] -rw------- 1 boinc boinc       746 Oct 13 03:49 pilotlog.txt
[2025-10-13 03:49:16] -rw------- 1 boinc boinc    728718 Oct 13 03:49 log.46676269._072524.job.log.1
[2025-10-13 03:49:16] -rw------- 1 boinc boinc       357 Oct 13 03:49 output.list
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:49 runtime_log
[2025-10-13 03:49:16] -rw------- 1 boinc boinc    993280 Oct 13 03:49 result.tar.gz
[2025-10-13 03:49:16] -rw------- 1 boinc boinc       659 Oct 13 03:49 xWCODmAk4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxpiNDmQJP3Bn.diag
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc      8782 Oct 13 03:49 runtime_log.err
[2025-10-13 03:49:16] -rw-r--r-- 1 boinc boinc     22403 Oct 13 03:49 stderr.txt
[2025-10-13 03:49:16] HITS file was successfully produced:
[2025-10-13 03:49:16] -rw------- 1 boinc boinc 193323885 Oct 13 03:48 shared/HITS.pool.root.1
[2025-10-13 03:49:16]  *** Contents of shared directory: ***
[2025-10-13 03:49:16] total 404328
[2025-10-13 03:49:16] -rw-r--r-- 2 boinc boinc 219107996 Oct 13 02:25 ATLAS.root_0
[2025-10-13 03:49:16] -rw-r--r-- 2 boinc boinc    569677 Oct 13 02:25 input.tar.gz
[2025-10-13 03:49:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:25 start_atlas.sh
[2025-10-13 03:49:16] -rw------- 1 boinc boinc 193323885 Oct 13 03:48 HITS.pool.root.1
[2025-10-13 03:49:16] -rw------- 1 boinc boinc    993280 Oct 13 03:49 result.tar.gz
03:49:37 (102238): run_atlas exited; CPU time 14248.831861
03:49:37 (102238): called boinc_finish(0)

</stderr_txt>
]]>

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