Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:01:46 (3411): wrapper (7.7.26015): starting
19:01:46 (3411): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:01:46] Arguments: --nthreads 8
[2025-10-12 19:01:46] Threads: 8
[2025-10-12 19:01:46] Checking for CVMFS
[2025-10-12 19:01:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:01:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:01:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:01:49] 2.11.2.0 24942 18993 66112 151627 3 60 25088547 25165825 4632 130560 0 4833833 99.943 1626359 1163 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 19:01:49] CVMFS is ok
[2025-10-12 19:01:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:01:49] Checking for apptainer binary...
[2025-10-12 19:01:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:01:49] Running /usr/bin/apptainer --version
[2025-10-12 19:01:49] apptainer version 1.3.2-1.el7
[2025-10-12 19:01:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:02:09] cg-vwn352.simple-grid.lan
[2025-10-12 19:02:09] apptainer works
[2025-10-12 19:02:09] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:02:09] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:02:09] Starting ATLAS job with PandaID=6839387606
[2025-10-12 19:02:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:20:04]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:20:04] 2025-10-12 21:19:07,128 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:20:04] 2025-10-12 21:19:07,133 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:20:04] 2025-10-12 21:19:07,134 | INFO     | sum of square deviations: 4286517580.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,144 | INFO     | sum of deviations: 73262355938.49998
[2025-10-12 23:20:04] 2025-10-12 21:19:07,144 | INFO     | mean x: 1760296500.5
[2025-10-12 23:20:04] 2025-10-12 21:19:07,145 | INFO     | mean y: 2441893.7875
[2025-10-12 23:20:04] 2025-10-12 21:19:07,145 | INFO     | -- intersect: -30083395005.294327
[2025-10-12 23:20:04] 2025-10-12 21:19:07,145 | INFO     | intersect: -30083395005.294327
[2025-10-12 23:20:04] 2025-10-12 21:19:07,145 | INFO     | chi2: 6.280488172482942
[2025-10-12 23:20:04] 2025-10-12 21:19:07,146 | INFO     | sum of square deviations: 4024149870.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,148 | INFO     | sum of deviations: 87482940220.99997
[2025-10-12 23:20:04] 2025-10-12 21:19:07,148 | INFO     | mean x: 1760296348.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,148 | INFO     | mean y: 2450003.4127659574
[2025-10-12 23:20:04] 2025-10-12 21:19:07,148 | INFO     | -- intersect: -38265483636.77459
[2025-10-12 23:20:04] 2025-10-12 21:19:07,148 | INFO     | intersect: -38265483636.77459
[2025-10-12 23:20:04] 2025-10-12 21:19:07,149 | INFO     | chi2: 5.5592427848298005
[2025-10-12 23:20:04] 2025-10-12 21:19:07,149 | INFO     | current chi2=5.5592427848298005 (change=11.483906471047497 %)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,149 | INFO     | right removable region: 234
[2025-10-12 23:20:04] 2025-10-12 21:19:07,150 | INFO     | sum of square deviations: 4024149870.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,152 | INFO     | sum of deviations: -7592805908.000004
[2025-10-12 23:20:04] 2025-10-12 21:19:07,152 | INFO     | mean x: 1760296653.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,152 | INFO     | mean y: 2488846.4936170215
[2025-10-12 23:20:04] 2025-10-12 21:19:07,152 | INFO     | -- intersect: 3323834039.5172143
[2025-10-12 23:20:04] 2025-10-12 21:19:07,152 | INFO     | intersect: 3323834039.5172143
[2025-10-12 23:20:04] 2025-10-12 21:19:07,153 | INFO     | chi2: 1.7774019272191774
[2025-10-12 23:20:04] 2025-10-12 21:19:07,153 | INFO     | current chi2=1.7774019272191774 (change=71.69962145607393 %)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,153 | INFO     | sum of square deviations: 3772712597.5
[2025-10-12 23:20:04] 2025-10-12 21:19:07,155 | INFO     | sum of deviations: -38243417226.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,155 | INFO     | mean x: 1760296805.5
[2025-10-12 23:20:04] 2025-10-12 21:19:07,155 | INFO     | mean y: 2507303.756521739
[2025-10-12 23:20:04] 2025-10-12 21:19:07,155 | INFO     | -- intersect: 17846369891.895657
[2025-10-12 23:20:04] 2025-10-12 21:19:07,155 | INFO     | intersect: 17846369891.895657
[2025-10-12 23:20:04] 2025-10-12 21:19:07,156 | INFO     | chi2: 0.9114752680103184
[2025-10-12 23:20:04] 2025-10-12 21:19:07,156 | INFO     | current chi2=0.9114752680103184 (change=48.718674484821726 %)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,156 | INFO     | sum of square deviations: 3531973200.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,158 | INFO     | sum of deviations: -37245821335.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,158 | INFO     | mean x: 1760296958.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,166 | INFO     | mean y: 2506637.3466666667
[2025-10-12 23:20:04] 2025-10-12 21:19:07,166 | INFO     | -- intersect: 18565418154.9686
[2025-10-12 23:20:04] 2025-10-12 21:19:07,166 | INFO     | intersect: 18565418154.9686
[2025-10-12 23:20:04] 2025-10-12 21:19:07,167 | INFO     | chi2: 0.8960509015568814
[2025-10-12 23:20:04] 2025-10-12 21:19:07,167 | INFO     | current chi2=0.8960509015568814 (change=1.6922419065859304 %)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,167 | INFO     | left removable region: 30
[2025-10-12 23:20:04] 2025-10-12 21:19:07,167 | INFO     | sum of square deviations: 2632440055.0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,169 | INFO     | sum of deviations: -2843182031.4999995
[2025-10-12 23:20:04] 2025-10-12 21:19:07,169 | INFO     | mean x: 1760297232.5
[2025-10-12 23:20:04] 2025-10-12 21:19:07,169 | INFO     | mean y: 2503033.1715686275
[2025-10-12 23:20:04] 2025-10-12 21:19:07,169 | INFO     | -- intersect: 1903722189.9144092
[2025-10-12 23:20:04] 2025-10-12 21:19:07,169 | INFO     | intersect: 1903722189.9144092
[2025-10-12 23:20:04] 2025-10-12 21:19:07,170 | INFO     | chi2: 0.03970080718697645
[2025-10-12 23:20:04] 2025-10-12 21:19:07,170 | INFO     | -- intersect: 1903722189.9144092
[2025-10-12 23:20:04] 2025-10-12 21:19:07,170 | INFO     | current memory leak: -1.08 B/s (using 204 data points, chi2=0.04)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,171 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,171 | INFO     | ..............................
[2025-10-12 23:20:04] 2025-10-12 21:19:07,171 | INFO     | . Timing measurements:
[2025-10-12 23:20:04] 2025-10-12 21:19:07,171 | INFO     | . get job = 0 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,171 | INFO     | . initial setup = 12 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,171 | INFO     | . payload setup = 138 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,172 | INFO     | . stage-in = 0 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,172 | INFO     | . payload execution = 14779 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,172 | INFO     | . stage-out = 3 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,172 | INFO     | . log creation = 1 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,172 | INFO     | ..............................
[2025-10-12 23:20:04] 2025-10-12 21:19:07,391 | INFO     | 
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | job summary report
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | --------------------------------------------------
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | PanDA job id: 6839387606
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | task id: 46676269
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | errors: (none)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | pilot state: finished 
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | transexitcode: 0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,392 | INFO     | exeerrorcode: 0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | exeerrordiag: 
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | exitcode: 0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | exitmsg: OK
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | cpuconsumptiontime: 55837 s
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | nevents: 400
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | neventsw: 0
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | pid: 13736
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | pgrp: 13736
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | corecount: 8
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | event service: False
[2025-10-12 23:20:04] 2025-10-12 21:19:07,393 | INFO     | sizes: {0: 2347978, 1: 2348663, 2: 2348834, 12: 2348862, 23: 2348890, 34: 2348918, 44: 2349074, 55: 2349102, 66: 2349130, 77: 2349158, 87: 2349214, 92: 2349784, 98
[2025-10-12 23:20:04] 2025-10-12 21:19:07,394 | INFO     | --------------------------------------------------
[2025-10-12 23:20:04] 2025-10-12 21:19:07,394 | INFO     | 
[2025-10-12 23:20:04] 2025-10-12 21:19:07,394 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-10-12 23:20:04] 2025-10-12 21:19:07,676 | INFO     | time since job start (15218s) is within the limit (172800.0s)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,718 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,719 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:20:04] 2025-10-12 21:19:07,719 | INFO     | job 6839387606 has completed (purged errors)
[2025-10-12 23:20:04] 2025-10-12 21:19:07,719 | INFO     | overall cleanup function is called
[2025-10-12 23:20:04] 2025-10-12 21:19:08,729 | INFO     | --- collectZombieJob: --- 10, [13736]
[2025-10-12 23:20:04] 2025-10-12 21:19:08,729 | INFO     | zombie collector waiting for pid 13736
[2025-10-12 23:20:04] 2025-10-12 21:19:08,729 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:20:04] 2025-10-12 21:19:08,729 | INFO     | collected zombie processes
[2025-10-12 23:20:04] 2025-10-12 21:19:08,729 | INFO     | will attempt to kill all subprocesses of pid=13736
[2025-10-12 23:20:04] 2025-10-12 21:19:08,850 | INFO     | process IDs to be killed: [13736] (in reverse order)
[2025-10-12 23:20:04] 2025-10-12 21:19:09,843 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:20:04] 2025-10-12 21:19:09,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:20:04] 2025-10-12 21:19:09,850 | INFO     | did not find any defunct processes belonging to 13736
[2025-10-12 23:20:04] 2025-10-12 21:19:09,853 | INFO     | did not find any defunct processes belonging to 13736
[2025-10-12 23:20:04] 2025-10-12 21:19:09,853 | INFO     | ready for new job
[2025-10-12 23:20:04] 2025-10-12 21:19:09,853 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:20:04] 2025-10-12 21:19:09,856 | INFO     | ***************************************
[2025-10-12 23:20:04] 2025-10-12 21:19:09,856 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:20:04] 2025-10-12 21:19:09,856 | INFO     | ***************************************
[2025-10-12 23:20:04] 2025-10-12 21:19:09,856 | INFO     | 
[2025-10-12 23:20:04] 2025-10-12 21:19:09,856 | INFO     | pilot is running in a VM
[2025-10-12 23:20:04] 2025-10-12 21:19:09,857 | INFO     | architecture information:
[2025-10-12 23:20:04] 2025-10-12 21:19:09,870 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:20:04] 2025-10-12 21:19:10,084 | INFO     | cat /etc/os-release:
[2025-10-12 23:20:04] NAME="CentOS Linux"
[2025-10-12 23:20:04] VERSION="7 (Core)"
[2025-10-12 23:20:04] ID="centos"
[2025-10-12 23:20:04] ID_LIKE="rhel fedora"
[2025-10-12 23:20:04] VERSION_ID="7"
[2025-10-12 23:20:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:20:04] ANSI_COLOR="0;31"
[2025-10-12 23:20:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:20:04] HOME_URL="https://www.centos.org/"
[2025-10-12 23:20:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:20:04] 
[2025-10-12 23:20:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:20:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:20:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:20:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:20:04] 
[2025-10-12 23:20:04] 2025-10-12 21:19:10,084 | INFO     | ***************************************
[2025-10-12 23:20:04] 2025-10-12 21:19:10,588 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-10-12 23:20:04] 2025-10-12 21:19:10,804 | INFO     | sufficient remaining disk space (496000565248 B)
[2025-10-12 23:20:04] 2025-10-12 21:19:10,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:20:04] 2025-10-12 21:19:10,805 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:20:04] 2025-10-12 21:19:10,805 | INFO     | update_server=False
[2025-10-12 23:20:04] 2025-10-12 21:19:10,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:20:04] 2025-10-12 21:19:10,805 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:20:04] 2025-10-12 21:19:10,805 | INFO     | aborting loop
[2025-10-12 23:20:04] 2025-10-12 21:19:10,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:20:04] 2025-10-12 21:19:10,854 | INFO     | all payload control threads have been joined
[2025-10-12 23:20:04] 2025-10-12 21:19:11,017 | INFO     | all data control threads have been joined
[2025-10-12 23:20:04] 2025-10-12 21:19:11,706 | INFO     | all job control threads have been joined
[2025-10-12 23:20:04] 2025-10-12 21:19:11,811 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:11,812 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:11,860 | INFO     | [payload] control thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:11,865 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:11,994 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:12,023 | INFO     | [data] control thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:12,064 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:12,304 | INFO     | [job] validate thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:12,384 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:12,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:20:04] 2025-10-12 21:19:12,463 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:12,712 | INFO     | [job] control thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:12,813 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:13,181 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:13,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:20:04] 2025-10-12 21:19:13,290 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:13,412 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:17,198 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:20:04] 2025-10-12 21:19:40,876 | INFO     | PID=7171 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 23:20:04] 2025-10-12 21:19:40,876 | INFO     | .. there are 9 such processes running
[2025-10-12 23:20:04] 2025-10-12 21:19:40,877 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:20:04] 2025-10-12 21:19:40,877 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:20:04] 2025-10-12 21:19:40,877 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:20:04] 2025-10-12 21:19:54,721 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:20:04] 2025-10-12 21:19:55,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659274659648)>', '<ExcThread(monitor, started 140658098566912)>']
[2025-10-12 23:20:04] 2025-10-12 21:19:55,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:20:04] 2025-10-12 21:19:55,967 | INFO     | [monitor] control thread has ended
[2025-10-12 23:20:04] 2025-10-12 21:20:00,322 | INFO     | all workflow threads have been joined
[2025-10-12 23:20:04] 2025-10-12 21:20:00,322 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:20:04] 2025-10-12 21:20:00,322 | INFO     | traces error code: 0
[2025-10-12 23:20:04] 2025-10-12 21:20:00,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:20:04] 2025-10-12 21:20:00,664 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:20:04] 2025-10-12 21:20:00,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:20:04] 2025-10-12 21:20:00,736 [wrapper] pilotpid: 7171
[2025-10-12 23:20:04] 2025-10-12 21:20:00,760 [wrapper] Pilot exit status: 0
[2025-10-12 23:20:04] 2025-10-12 21:20:01,259 [wrapper] pandaids: 6839387606
[2025-10-12 23:20:04] 2025-10-12 21:20:02,057 [wrapper] cleanup supervisor_pilot  7790 7172
[2025-10-12 23:20:04] 2025-10-12 21:20:02,125 [wrapper] Test setup, not cleaning
[2025-10-12 23:20:04] 2025-10-12 21:20:02,196 [wrapper] apfmon messages muted
[2025-10-12 23:20:04] 2025-10-12 21:20:02,273 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:20:04] 2025-10-12 21:20:02,410 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:20:04]  *** Error codes and diagnostics ***
[2025-10-12 23:20:04]     "exeErrorCode": 0,
[2025-10-12 23:20:04]     "exeErrorDiag": "",
[2025-10-12 23:20:04]     "pilotErrorCode": 0,
[2025-10-12 23:20:04]     "pilotErrorDiag": "",
[2025-10-12 23:20:04]  *** Listing of results directory ***
[2025-10-12 23:20:04] total 422644
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc      5112 Oct 12 06:58 queuedata.json
[2025-10-12 23:20:04] -rwx------. 1 boinc boinc     36292 Oct 12 06:59 runpilot2-wrapper.sh
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc       100 Oct 12 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:20:04] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 19:01 run_atlas
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc       105 Oct 12 19:01 job.xml
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc      6390 Oct 12 19:01 init_data.xml
[2025-10-12 23:20:04] -rw-r--r--. 2 boinc boinc 224014903 Oct 12 19:01 EVNT.46676267._004307.pool.root.1
[2025-10-12 23:20:04] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:01 start_atlas.sh
[2025-10-12 23:20:04] drwxrwx--x. 2 boinc boinc        68 Oct 12 19:01 shared
[2025-10-12 23:20:04] -rw-r--r--. 2 boinc boinc    569677 Oct 12 19:01 input.tar.gz
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc         0 Oct 12 19:01 boinc_lockfile
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc      2549 Oct 12 19:02 pandaJob.out
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc    975528 Oct 12 19:05 agis_schedconf.cvmfs.json
[2025-10-12 23:20:04] drwx------. 5 boinc boinc      4096 Oct 12 19:05 pilot3
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc 199877645 Oct 12 23:15 HITS.46676269._071497.pool.root.1
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc       531 Oct 12 23:16 boinc_task_state.xml
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc      1017 Oct 12 23:17 memory_monitor_summary.json
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc   1560580 Oct 12 23:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc    474641 Oct 12 23:17 log.46676269._071497.job.log.tgz.1
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc      7780 Oct 12 23:19 heartbeat.json
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc      8192 Oct 12 23:19 boinc_mmap_file
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc        28 Oct 12 23:19 wrapper_checkpoint.txt
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc        95 Oct 12 23:19 pilot_heartbeat.json
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc      4883 Oct 12 23:20 pilotlog.txt
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc   2029732 Oct 12 23:20 log.46676269._071497.job.log.1
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc       357 Oct 12 23:20 output.list
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc       620 Oct 12 23:20 runtime_log
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc   2519040 Oct 12 23:20 result.tar.gz
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc       657 Oct 12 23:20 XG9LDmwL3R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmFTMDm5oo6in.diag
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc      8703 Oct 12 23:20 runtime_log.err
[2025-10-12 23:20:04] -rw-r--r--. 1 boinc boinc     20564 Oct 12 23:20 stderr.txt
[2025-10-12 23:20:04] HITS file was successfully produced:
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc 199877645 Oct 12 23:15 shared/HITS.pool.root.1
[2025-10-12 23:20:04]  *** Contents of shared directory: ***
[2025-10-12 23:20:04] total 417000
[2025-10-12 23:20:04] -rw-r--r--. 2 boinc boinc 224014903 Oct 12 19:01 ATLAS.root_0
[2025-10-12 23:20:04] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:01 start_atlas.sh
[2025-10-12 23:20:04] -rw-r--r--. 2 boinc boinc    569677 Oct 12 19:01 input.tar.gz
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc 199877645 Oct 12 23:15 HITS.pool.root.1
[2025-10-12 23:20:04] -rw-------. 1 boinc boinc   2519040 Oct 12 23:20 result.tar.gz
23:20:06 (3411): run_atlas exited; CPU time 56055.725585
23:20:06 (3411): called boinc_finish(0)

</stderr_txt>
]]>

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