Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:57:24 (4860): wrapper (7.7.26015): starting
08:57:24 (4860): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:57:24] Arguments: --nthreads 12
[2025-10-12 08:57:24] Threads: 12
[2025-10-12 08:57:24] Checking for CVMFS
[2025-10-12 08:57:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:57:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:57:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:57:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:57:25] 2.11.2.0 2913 222911 99460 151620 0 59 15096125 20275201 1 130560 1 108948116 99.984 13330911 12539 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:57:25] CVMFS is ok
[2025-10-12 08:57:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:57:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:57:25] Further information can be found at the LHC@home message board.
[2025-10-12 08:57:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:57:25] Checking for apptainer binary...
[2025-10-12 08:57:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:57:25] Running /usr/bin/apptainer --version
[2025-10-12 08:57:25] apptainer version 1.3.2-1.el7
[2025-10-12 08:57:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:57:26] c-205-6.aglt2.org
[2025-10-12 08:57:26] apptainer works
[2025-10-12 08:57:26] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:57:26] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:57:26] Starting ATLAS job with PandaID=6839386647
[2025-10-12 08:57:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:08:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:08:53]  protocol_id=None
[2025-10-12 10:08:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 10:08:53]  replicas=None
[2025-10-12 10:08:53]  scope=mc23_13p6TeV
[2025-10-12 10:08:53]  status=None
[2025-10-12 10:08:53]  status_code=0
[2025-10-12 10:08:53]  storage_token=
[2025-10-12 10:08:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839386647/log.46676269._070943.job.log.tgz.1
[2025-10-12 10:08:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/2a/log.46676269._070943.job.log.tgz.1
[2025-10-12 10:08:53]  workdir=None
[2025-10-12 10:08:53] ]
[2025-10-12 10:08:53] 2025-10-12 14:07:54,865 | INFO     | transferring file log.46676269._070943.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839386647/log.46676269._070943.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 10:08:53] 2025-10-12 14:07:54,865 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839386647/log.46676269._070943.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._070943.job
[2025-10-12 10:08:53] 2025-10-12 14:07:54,887 | INFO     | adding to output.list: log.46676269._070943.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/2a/log.46676269._070943.job.log.tg
[2025-10-12 10:08:53] 2025-10-12 14:07:54,888 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 10:08:53] 2025-10-12 14:07:54,888 | INFO     | summary of transferred files:
[2025-10-12 10:08:53] 2025-10-12 14:07:54,889 | INFO     |  -- lfn=log.46676269._070943.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 10:08:53] 2025-10-12 14:07:54,889 | INFO     | stage-out finished correctly
[2025-10-12 10:08:53] 2025-10-12 14:07:55,065 | INFO     | time since job start (4214s) is within the limit (172800.0s)
[2025-10-12 10:08:53] 2025-10-12 14:07:56,085 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 10:08:53] 2025-10-12 14:07:56,166 | INFO     | job 6839386647 has state=finished
[2025-10-12 10:08:53] 2025-10-12 14:07:56,166 | INFO     | preparing for final server update for job 6839386647 in state='finished'
[2025-10-12 10:08:53] 2025-10-12 14:07:56,167 | INFO     | this job has now completed (state=finished)
[2025-10-12 10:08:53] 2025-10-12 14:07:56,167 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 10:08:53] 2025-10-12 14:07:56,167 | INFO     | log transfer has been attempted: DONE
[2025-10-12 10:08:53] 2025-10-12 14:07:56,167 | INFO     | job 6839386647 has finished - writing final server update
[2025-10-12 10:08:53] 2025-10-12 14:07:56,168 | INFO     | total number of processed events: 400 (read)
[2025-10-12 10:08:53] 2025-10-12 14:07:56,169 | INFO     | executing command: lscpu
[2025-10-12 10:08:53] 2025-10-12 14:07:56,195 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 10:08:53] 2025-10-12 14:07:56,639 | INFO     | monitor loop #314: job 0:6839386647 is in state 'finished'
[2025-10-12 10:08:53] 2025-10-12 14:07:56,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:08:53] 2025-10-12 14:07:57,070 | INFO     | time since job start (4216s) is within the limit (172800.0s)
[2025-10-12 10:08:53] 2025-10-12 14:07:58,191 | INFO     | PID=8537 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 10:08:53] 2025-10-12 14:07:59,142 | INFO     | monitor loop #315: job 0:6839386647 is in state 'finished'
[2025-10-12 10:08:53] 2025-10-12 14:07:59,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:08:53] 2025-10-12 14:07:59,192 | INFO     | time since job start (4218s) is within the limit (172800.0s)
[2025-10-12 10:08:53] 2025-10-12 14:08:00,931 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 10:08:53] 2025-10-12 14:08:00,935 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 10:08:53] 2025-10-12 14:08:00,938 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839386647/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:08:53] 2025-10-12 14:08:00,938 | INFO     | extracted standard info from prmon json
[2025-10-12 10:08:53] 2025-10-12 14:08:00,939 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:08:53] 2025-10-12 14:08:00,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:08:53] 2025-10-12 14:08:00,939 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:08:53] 2025-10-12 14:08:00,939 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:08:53] 2025-10-12 14:08:00,940 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:08:53] 2025-10-12 14:08:00,941 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 10:08:53] 2025-10-12 14:08:00,941 | INFO     | sum of deviations: -3909807932.0000005
[2025-10-12 10:08:53] 2025-10-12 14:08:00,941 | INFO     | mean x: 1760276055.5
[2025-10-12 10:08:53] 2025-10-12 14:08:00,941 | INFO     | mean y: 2715285.3870967743
[2025-10-12 10:08:53] 2025-10-12 14:08:00,941 | INFO     | -- intersect: 93155470958.06999
[2025-10-12 10:08:53] 2025-10-12 14:08:00,941 | INFO     | intersect: 93155470958.06999
[2025-10-12 10:08:53] 2025-10-12 14:08:00,942 | INFO     | chi2: 0.050264566142944674
[2025-10-12 10:08:53] 2025-10-12 14:08:00,942 | INFO     | -- intersect: 93155470958.06999
[2025-10-12 10:08:53] 2025-10-12 14:08:00,942 | INFO     | current memory leak: -52.92 B/s (using 62 data points, chi2=0.05)
[2025-10-12 10:08:53] 2025-10-12 14:08:00,942 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-10-12 10:08:53] 2025-10-12 14:08:00,942 | INFO     | ..............................
[2025-10-12 10:08:53] 2025-10-12 14:08:00,942 | INFO     | . Timing measurements:
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | . get job = 0 s
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | . initial setup = 2 s
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | . payload setup = 6 s
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | . stage-in = 0 s
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | . payload execution = 4184 s
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | . stage-out = 0 s
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | . log creation = 0 s
[2025-10-12 10:08:53] 2025-10-12 14:08:00,943 | INFO     | ..............................
[2025-10-12 10:08:53] 2025-10-12 14:08:01,024 | INFO     | 
[2025-10-12 10:08:53] 2025-10-12 14:08:01,024 | INFO     | job summary report
[2025-10-12 10:08:53] 2025-10-12 14:08:01,024 | INFO     | --------------------------------------------------
[2025-10-12 10:08:53] 2025-10-12 14:08:01,024 | INFO     | PanDA job id: 6839386647
[2025-10-12 10:08:53] 2025-10-12 14:08:01,024 | INFO     | task id: 46676269
[2025-10-12 10:08:53] 2025-10-12 14:08:01,025 | INFO     | errors: (none)
[2025-10-12 10:08:53] 2025-10-12 14:08:01,025 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:08:53] 2025-10-12 14:08:01,025 | INFO     | pilot state: finished 
[2025-10-12 10:08:53] 2025-10-12 14:08:01,025 | INFO     | transexitcode: 0
[2025-10-12 10:08:53] 2025-10-12 14:08:01,025 | INFO     | exeerrorcode: 0
[2025-10-12 10:08:53] 2025-10-12 14:08:01,025 | INFO     | exeerrordiag: 
[2025-10-12 10:08:53] 2025-10-12 14:08:01,026 | INFO     | exitcode: 0
[2025-10-12 10:08:53] 2025-10-12 14:08:01,026 | INFO     | exitmsg: OK
[2025-10-12 10:08:53] 2025-10-12 14:08:01,026 | INFO     | cpuconsumptiontime: 45995 s
[2025-10-12 10:08:53] 2025-10-12 14:08:01,026 | INFO     | nevents: 400
[2025-10-12 10:08:53] 2025-10-12 14:08:01,026 | INFO     | neventsw: 0
[2025-10-12 10:08:53] 2025-10-12 14:08:01,026 | INFO     | pid: 14959
[2025-10-12 10:08:53] 2025-10-12 14:08:01,027 | INFO     | pgrp: 14959
[2025-10-12 10:08:53] 2025-10-12 14:08:01,027 | INFO     | corecount: 12
[2025-10-12 10:08:53] 2025-10-12 14:08:01,027 | INFO     | event service: False
[2025-10-12 10:08:53] 2025-10-12 14:08:01,027 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4195: 2375071, 4197: 2384069, 4198: 2384125, 4203: 2384447}
[2025-10-12 10:08:53] 2025-10-12 14:08:01,027 | INFO     | --------------------------------------------------
[2025-10-12 10:08:53] 2025-10-12 14:08:01,027 | INFO     | 
[2025-10-12 10:08:53] 2025-10-12 14:08:01,028 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 10:08:53] 2025-10-12 14:08:01,053 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,053 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,053 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,054 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,054 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,054 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,054 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,054 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,054 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,055 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,055 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,055 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,055 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,055 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,055 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,056 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,056 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,056 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:08:53] 2025-10-12 14:08:01,056 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,056 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:08:53] 2025-10-12 14:08:01,057 | INFO     | job 6839386647 has completed (purged errors)
[2025-10-12 10:08:53] 2025-10-12 14:08:01,057 | INFO     | overall cleanup function is called
[2025-10-12 10:08:53] 2025-10-12 14:08:02,065 | INFO     | --- collectZombieJob: --- 10, [14959]
[2025-10-12 10:08:53] 2025-10-12 14:08:02,065 | INFO     | zombie collector waiting for pid 14959
[2025-10-12 10:08:53] 2025-10-12 14:08:02,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:08:53] 2025-10-12 14:08:02,065 | INFO     | collected zombie processes
[2025-10-12 10:08:53] 2025-10-12 14:08:02,065 | INFO     | will attempt to kill all subprocesses of pid=14959
[2025-10-12 10:08:53] 2025-10-12 14:08:02,156 | INFO     | process IDs to be killed: [14959] (in reverse order)
[2025-10-12 10:08:53] 2025-10-12 14:08:02,208 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:08:53] 2025-10-12 14:08:02,208 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:08:53] 2025-10-12 14:08:02,211 | INFO     | did not find any defunct processes belonging to 14959
[2025-10-12 10:08:53] 2025-10-12 14:08:02,213 | INFO     | did not find any defunct processes belonging to 14959
[2025-10-12 10:08:53] 2025-10-12 14:08:02,213 | INFO     | ready for new job
[2025-10-12 10:08:53] 2025-10-12 14:08:02,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:08:53] 2025-10-12 14:08:02,215 | INFO     | ***************************************
[2025-10-12 10:08:53] 2025-10-12 14:08:02,215 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:08:53] 2025-10-12 14:08:02,215 | INFO     | ***************************************
[2025-10-12 10:08:53] 2025-10-12 14:08:02,215 | INFO     | 
[2025-10-12 10:08:53] 2025-10-12 14:08:02,216 | INFO     | architecture information:
[2025-10-12 10:08:53] 2025-10-12 14:08:02,216 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:08:53] 2025-10-12 14:08:02,231 | INFO     | cat /etc/os-release:
[2025-10-12 10:08:53] NAME="CentOS Linux"
[2025-10-12 10:08:53] VERSION="7 (Core)"
[2025-10-12 10:08:53] ID="centos"
[2025-10-12 10:08:53] ID_LIKE="rhel fedora"
[2025-10-12 10:08:53] VERSION_ID="7"
[2025-10-12 10:08:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:08:53] ANSI_COLOR="0;31"
[2025-10-12 10:08:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:08:53] HOME_URL="https://www.centos.org/"
[2025-10-12 10:08:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:08:53] 
[2025-10-12 10:08:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:08:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:08:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:08:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:08:53] 
[2025-10-12 10:08:53] 2025-10-12 14:08:02,231 | INFO     | ***************************************
[2025-10-12 10:08:53] 2025-10-12 14:08:02,734 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 10:08:53] 2025-10-12 14:08:02,751 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-10-12 10:08:53] 2025-10-12 14:08:02,763 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:08:53] 2025-10-12 14:08:02,764 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:08:53] 2025-10-12 14:08:02,764 | INFO     | update_server=False
[2025-10-12 10:08:53] 2025-10-12 14:08:02,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:08:53] 2025-10-12 14:08:02,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:08:53] 2025-10-12 14:08:02,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:08:53] 2025-10-12 14:08:02,765 | INFO     | aborting loop
[2025-10-12 10:08:53] 2025-10-12 14:08:02,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:08:53] 2025-10-12 14:08:02,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:08:53] 2025-10-12 14:08:03,260 | INFO     | all payload control threads have been joined
[2025-10-12 10:08:53] 2025-10-12 14:08:03,770 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:03,771 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:03,771 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:03,789 | INFO     | all data control threads have been joined
[2025-10-12 10:08:53] 2025-10-12 14:08:03,911 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:03,915 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:04,074 | INFO     | all job control threads have been joined
[2025-10-12 10:08:53] 2025-10-12 14:08:04,138 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:04,165 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:04,263 | INFO     | [payload] control thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:04,795 | INFO     | [data] control thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:04,921 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:04,926 | INFO     | [job] validate thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:04,989 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:05,056 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:05,079 | INFO     | [job] control thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:06,771 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:13,673 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:08:53] 2025-10-12 14:08:14,678 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:08:53] 2025-10-12 14:08:32,397 | INFO     | PID=8537 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 10:08:53] 2025-10-12 14:08:32,397 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:08:53] 2025-10-12 14:08:32,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:08:53] 2025-10-12 14:08:32,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:08:53] 2025-10-12 14:08:47,886 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:08:53] 2025-10-12 14:08:48,633 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140308482869056)>', '<ExcThread(monitor, started 140307916121856)>']
[2025-10-12 10:08:53] 2025-10-12 14:08:49,484 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:08:53] 2025-10-12 14:08:49,484 | INFO     | [monitor] control thread has ended
[2025-10-12 10:08:53] 2025-10-12 14:08:53,658 | INFO     | all workflow threads have been joined
[2025-10-12 10:08:53] 2025-10-12 14:08:53,658 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:08:53] 2025-10-12 14:08:53,659 | INFO     | traces error code: 0
[2025-10-12 10:08:53] 2025-10-12 14:08:53,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:08:53] 2025-10-12 14:08:53,747 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:08:53] 2025-10-12 14:08:53,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:08:53] 2025-10-12 14:08:53,754 [wrapper] pilotpid: 8537
[2025-10-12 10:08:53] 2025-10-12 14:08:53,758 [wrapper] Pilot exit status: 0
[2025-10-12 10:08:53] 2025-10-12 14:08:53,773 [wrapper] pandaids: 6839386647
[2025-10-12 10:08:53] 2025-10-12 14:08:53,817 [wrapper] cleanup supervisor_pilot  1226 8538
[2025-10-12 10:08:53] 2025-10-12 14:08:53,821 [wrapper] Test setup, not cleaning
[2025-10-12 10:08:53] 2025-10-12 14:08:53,825 [wrapper] apfmon messages muted
[2025-10-12 10:08:53] 2025-10-12 14:08:53,829 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:08:53] 2025-10-12 14:08:53,832 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:08:53]  *** Error codes and diagnostics ***
[2025-10-12 10:08:53]     "exeErrorCode": 0,
[2025-10-12 10:08:53]     "exeErrorDiag": "",
[2025-10-12 10:08:53]     "pilotErrorCode": 0,
[2025-10-12 10:08:53]     "pilotErrorDiag": "",
[2025-10-12 10:08:53]  *** Listing of results directory ***
[2025-10-12 10:08:53] total 404592
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 00:11 pilot3.tar.gz
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:14 queuedata.json
[2025-10-12 10:08:53] -rwx------ 1 boincer umatlas     36292 Oct 12 00:15 runpilot2-wrapper.sh
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas       100 Oct 12 08:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:08:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 08:57 run_atlas
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas       105 Oct 12 08:57 job.xml
[2025-10-12 10:08:53] -rw-r--r-- 2 boincer umatlas 219943072 Oct 12 08:57 EVNT.46676267._003278.pool.root.1
[2025-10-12 10:08:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:57 start_atlas.sh
[2025-10-12 10:08:53] drwxrwx--x 2 boincer umatlas      4096 Oct 12 08:57 shared
[2025-10-12 10:08:53] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 08:57 input.tar.gz
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas         0 Oct 12 08:57 boinc_lockfile
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 08:57 pandaJob.out
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas    975512 Oct 12 08:57 agis_schedconf.cvmfs.json
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas   1560580 Oct 12 08:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:08:53] drwx------ 5 boincer umatlas      4096 Oct 12 08:57 pilot3
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 10:04 init_data.xml
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas 188447279 Oct 12 10:07 HITS.46676269._070943.pool.root.1
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas       529 Oct 12 10:07 boinc_task_state.xml
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas        95 Oct 12 10:07 pilot_heartbeat.json
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas      1049 Oct 12 10:07 memory_monitor_summary.json
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas    385387 Oct 12 10:07 log.46676269._070943.job.log.tgz.1
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas      7853 Oct 12 10:08 heartbeat.json
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 10:08 boinc_mmap_file
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas        27 Oct 12 10:08 wrapper_checkpoint.txt
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas      4817 Oct 12 10:08 pilotlog.txt
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas    615395 Oct 12 10:08 log.46676269._070943.job.log.1
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas       357 Oct 12 10:08 output.list
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas       620 Oct 12 10:08 runtime_log
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas   1024000 Oct 12 10:08 result.tar.gz
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 10:08 runtime_log.err
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas       658 Oct 12 10:08 dKpNDmIf2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRCTMDmKWnyIo.diag
[2025-10-12 10:08:53] -rw-r--r-- 1 boincer umatlas     21842 Oct 12 10:08 stderr.txt
[2025-10-12 10:08:53] HITS file was successfully produced:
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas 188447279 Oct 12 10:07 shared/HITS.pool.root.1
[2025-10-12 10:08:53]  *** Contents of shared directory: ***
[2025-10-12 10:08:53] total 400404
[2025-10-12 10:08:53] -rw-r--r-- 2 boincer umatlas 219943072 Oct 12 08:57 ATLAS.root_0
[2025-10-12 10:08:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:57 start_atlas.sh
[2025-10-12 10:08:53] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 08:57 input.tar.gz
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas 188447279 Oct 12 10:07 HITS.pool.root.1
[2025-10-12 10:08:53] -rw------- 1 boincer umatlas   1024000 Oct 12 10:08 result.tar.gz
10:08:55 (4860): run_atlas exited; CPU time 45961.009393
10:08:55 (4860): called boinc_finish(0)

</stderr_txt>
]]>

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