Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:55:56 (884046): wrapper (7.7.26015): starting
08:55:56 (884046): wrapper: running run_atlas (--nthreads 10)
[2025-10-12 08:55:56] Arguments: --nthreads 10
[2025-10-12 08:55:56] Threads: 10
[2025-10-12 08:55:56] Checking for CVMFS
[2025-10-12 08:55:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:55:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:55:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:55:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:55:58] 2.13.2.0 342865 27289 104600 151620 3 539 37446711 40960000 30483 16776704 0 204170749 99.774 115589252 46649 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:55:58] CVMFS is ok
[2025-10-12 08:55:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:55:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:55:58] Further information can be found at the LHC@home message board.
[2025-10-12 08:55:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:55:58] Checking for apptainer binary...
[2025-10-12 08:55:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:55:58] Running /usr/bin/apptainer --version
[2025-10-12 08:55:58] apptainer version 1.4.3-1.el9
[2025-10-12 08:55:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:55:58] c-208-36.aglt2.org
[2025-10-12 08:55:58] apptainer works
[2025-10-12 08:55:58] Set ATHENA_PROC_NUMBER=10
[2025-10-12 08:55:58] Set ATHENA_CORE_NUMBER=10
[2025-10-12 08:55:58] Starting ATLAS job with PandaID=6839588830
[2025-10-12 08:55:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:02:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:02:32] 2025-10-12 14:01:17,465 | INFO     |  -- lfn=log.46676269._072022.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 10:02:32] 2025-10-12 14:01:17,465 | INFO     | stage-out finished correctly
[2025-10-12 10:02:32] 2025-10-12 14:01:17,586 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 10:02:32] 2025-10-12 14:01:18,283 | INFO     | monitor loop #259: job 0:6839588830 is in state 'finished'
[2025-10-12 10:02:32] 2025-10-12 14:01:18,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:32] 2025-10-12 14:01:19,008 | INFO     | time since job start (3900s) is within the limit (172800.0s)
[2025-10-12 10:02:32] 2025-10-12 14:01:20,003 | INFO     | job 6839588830 has state=finished
[2025-10-12 10:02:32] 2025-10-12 14:01:20,004 | INFO     | preparing for final server update for job 6839588830 in state='finished'
[2025-10-12 10:02:32] 2025-10-12 14:01:20,004 | INFO     | this job has now completed (state=finished)
[2025-10-12 10:02:32] 2025-10-12 14:01:20,004 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 10:02:32] 2025-10-12 14:01:20,004 | INFO     | log transfer has been attempted: DONE
[2025-10-12 10:02:32] 2025-10-12 14:01:20,004 | INFO     | job 6839588830 has finished - writing final server update
[2025-10-12 10:02:32] 2025-10-12 14:01:20,004 | INFO     | total number of processed events: 400 (read)
[2025-10-12 10:02:32] 2025-10-12 14:01:20,005 | INFO     | executing command: lscpu
[2025-10-12 10:02:32] 2025-10-12 14:01:20,086 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 10:02:32] 2025-10-12 14:01:20,789 | INFO     | monitor loop #260: job 0:6839588830 is in state 'finished'
[2025-10-12 10:02:32] 2025-10-12 14:01:20,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:32] 2025-10-12 14:01:21,025 | INFO     | time since job start (3902s) is within the limit (172800.0s)
[2025-10-12 10:02:32] 2025-10-12 14:01:23,032 | INFO     | time since job start (3904s) is within the limit (172800.0s)
[2025-10-12 10:02:32] 2025-10-12 14:01:23,292 | INFO     | monitor loop #261: job 0:6839588830 is in state 'finished'
[2025-10-12 10:02:32] 2025-10-12 14:01:23,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:32] 2025-10-12 14:01:25,039 | INFO     | time since job start (3906s) is within the limit (172800.0s)
[2025-10-12 10:02:32] 2025-10-12 14:01:25,797 | INFO     | monitor loop #262: job 0:6839588830 is in state 'finished'
[2025-10-12 10:02:32] 2025-10-12 14:01:25,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:32] 2025-10-12 14:01:27,045 | INFO     | time since job start (3908s) is within the limit (172800.0s)
[2025-10-12 10:02:32] 2025-10-12 14:01:28,307 | INFO     | monitor loop #263: job 0:6839588830 is in state 'finished'
[2025-10-12 10:02:32] 2025-10-12 14:01:28,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:32] 2025-10-12 14:01:28,648 | INFO     | PID=891408 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 10:02:32] 2025-10-12 14:01:28,648 | INFO     | .. there are 37 such processes running
[2025-10-12 10:02:32] 2025-10-12 14:01:29,649 | INFO     | time since job start (3910s) is within the limit (172800.0s)
[2025-10-12 10:02:32] 2025-10-12 14:01:30,812 | INFO     | monitor loop #264: job 0:6839588830 is in state 'finished'
[2025-10-12 10:02:32] 2025-10-12 14:01:30,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:32] 2025-10-12 14:01:31,655 | INFO     | time since job start (3912s) is within the limit (172800.0s)
[2025-10-12 10:02:32] 2025-10-12 14:01:32,263 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 10:02:32] 2025-10-12 14:01:32,268 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3794.981718750002
[2025-10-12 10:02:32] 2025-10-12 14:01:32,280 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839588830/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:02:32] 2025-10-12 14:01:32,281 | INFO     | extracted standard info from prmon json
[2025-10-12 10:02:32] 2025-10-12 14:01:32,281 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:02:32] 2025-10-12 14:01:32,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:02:32] 2025-10-12 14:01:32,281 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:02:32] 2025-10-12 14:01:32,281 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:02:32] 2025-10-12 14:01:32,282 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:02:32] 2025-10-12 14:01:32,282 | INFO     | sum of square deviations: 57402961.719298236
[2025-10-12 10:02:32] 2025-10-12 14:01:32,282 | INFO     | sum of deviations: -632040550.4912282
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | mean x: 1760275830.0701754
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | mean y: 2590990.1228070175
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | -- intersect: 19384268717.736034
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | intersect: 19384268717.736034
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | chi2: 0.004433005891164557
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | -- intersect: 19384268717.736034
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | current memory leak: -11.01 B/s (using 57 data points, chi2=0.00)
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | could have reported an average CPU frequency of 3784 MHz (6 samples)
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | ..............................
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . Timing measurements:
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . get job = 0 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . initial setup = 3 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . payload setup = 8 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . stage-in = 0 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . payload execution = 3866 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . stage-out = 1 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | . log creation = 0 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,283 | INFO     | ..............................
[2025-10-12 10:02:32] 2025-10-12 14:01:32,367 | INFO     | 
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | job summary report
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | --------------------------------------------------
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | PanDA job id: 6839588830
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | task id: 46676269
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | errors: (none)
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | pilot state: finished 
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | transexitcode: 0
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | exeerrorcode: 0
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | exeerrordiag: 
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | exitcode: 0
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | exitmsg: OK
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | cpuconsumptiontime: 23208 s
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | nevents: 400
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | neventsw: 0
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | pid: 909625
[2025-10-12 10:02:32] 2025-10-12 14:01:32,368 | INFO     | pgrp: 909625
[2025-10-12 10:02:32] 2025-10-12 14:01:32,372 | INFO     | corecount: 10
[2025-10-12 10:02:32] 2025-10-12 14:01:32,372 | INFO     | event service: False
[2025-10-12 10:02:32] 2025-10-12 14:01:32,372 | INFO     | sizes: {0: 2348635, 1: 2348834, 8: 2349096, 11: 2349124, 3876: 2374996, 3878: 2384178, 3892: 2384316}
[2025-10-12 10:02:32] 2025-10-12 14:01:32,373 | INFO     | --------------------------------------------------
[2025-10-12 10:02:32] 2025-10-12 14:01:32,373 | INFO     | 
[2025-10-12 10:02:32] 2025-10-12 14:01:32,373 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 10:02:32] 2025-10-12 14:01:32,400 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:02:32] 2025-10-12 14:01:32,401 | INFO     | job 6839588830 has completed (purged errors)
[2025-10-12 10:02:32] 2025-10-12 14:01:32,402 | INFO     | overall cleanup function is called
[2025-10-12 10:02:32] 2025-10-12 14:01:33,408 | INFO     | --- collectZombieJob: --- 10, [909625]
[2025-10-12 10:02:32] 2025-10-12 14:01:33,411 | INFO     | zombie collector waiting for pid 909625
[2025-10-12 10:02:32] 2025-10-12 14:01:33,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:02:32] 2025-10-12 14:01:33,412 | INFO     | collected zombie processes
[2025-10-12 10:02:32] 2025-10-12 14:01:33,412 | INFO     | will attempt to kill all subprocesses of pid=909625
[2025-10-12 10:02:32] 2025-10-12 14:01:34,281 | INFO     | process IDs to be killed: [909625] (in reverse order)
[2025-10-12 10:02:32] 2025-10-12 14:01:34,724 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:02:32] 2025-10-12 14:01:34,724 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:02:32] 2025-10-12 14:01:34,746 | INFO     | did not find any defunct processes belonging to 909625
[2025-10-12 10:02:32] 2025-10-12 14:01:34,767 | INFO     | did not find any defunct processes belonging to 909625
[2025-10-12 10:02:32] 2025-10-12 14:01:34,770 | INFO     | ready for new job
[2025-10-12 10:02:32] 2025-10-12 14:01:34,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:02:32] 2025-10-12 14:01:34,772 | INFO     | ***************************************
[2025-10-12 10:02:32] 2025-10-12 14:01:34,772 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:02:32] 2025-10-12 14:01:34,772 | INFO     | ***************************************
[2025-10-12 10:02:32] 2025-10-12 14:01:34,772 | INFO     | 
[2025-10-12 10:02:32] 2025-10-12 14:01:34,791 | INFO     | architecture information:
[2025-10-12 10:02:32] 2025-10-12 14:01:34,795 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:02:32] 2025-10-12 14:01:34,810 | INFO     | cat /etc/os-release:
[2025-10-12 10:02:32] NAME="CentOS Linux"
[2025-10-12 10:02:32] VERSION="7 (Core)"
[2025-10-12 10:02:32] ID="centos"
[2025-10-12 10:02:32] ID_LIKE="rhel fedora"
[2025-10-12 10:02:32] VERSION_ID="7"
[2025-10-12 10:02:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:02:32] ANSI_COLOR="0;31"
[2025-10-12 10:02:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:02:32] HOME_URL="https://www.centos.org/"
[2025-10-12 10:02:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:02:32] 
[2025-10-12 10:02:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:02:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:02:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:02:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:02:32] 
[2025-10-12 10:02:32] 2025-10-12 14:01:34,811 | INFO     | ***************************************
[2025-10-12 10:02:32] 2025-10-12 14:01:35,315 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 10:02:32] 2025-10-12 14:01:35,345 | INFO     | sufficient remaining disk space (169386967040 B)
[2025-10-12 10:02:32] 2025-10-12 14:01:35,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:02:32] 2025-10-12 14:01:35,345 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:02:32] 2025-10-12 14:01:35,345 | INFO     | update_server=False
[2025-10-12 10:02:32] 2025-10-12 14:01:35,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:02:32] 2025-10-12 14:01:35,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:02:32] 2025-10-12 14:01:35,831 | INFO     | all payload control threads have been joined
[2025-10-12 10:02:32] 2025-10-12 14:01:35,831 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 10:02:32] 2025-10-12 14:01:35,832 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 10:02:32] 2025-10-12 14:01:35,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:02:32] 2025-10-12 14:01:35,832 | INFO     | will abort loop
[2025-10-12 10:02:32] 2025-10-12 14:01:36,018 | INFO     | all job control threads have been joined
[2025-10-12 10:02:32] 2025-10-12 14:01:36,177 | INFO     | all data control threads have been joined
[2025-10-12 10:02:32] 2025-10-12 14:01:36,350 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:36,533 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:36,733 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:36,836 | INFO     | [payload] control thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:36,837 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:36,837 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:36,873 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:37,023 | INFO     | [job] control thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:37,183 | INFO     | [data] control thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:37,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:02:32] 2025-10-12 14:01:37,352 | INFO     | [job] validate thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:37,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:02:32] 2025-10-12 14:01:37,411 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:37,556 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:37,646 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:38,388 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:41,205 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:01:45,729 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:02:32] 2025-10-12 14:01:46,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:02:32] 2025-10-12 14:02:05,278 | INFO     | PID=891408 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 10:02:32] 2025-10-12 14:02:05,278 | INFO     | .. there are 37 such processes running
[2025-10-12 10:02:32] 2025-10-12 14:02:05,278 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:02:32] 2025-10-12 14:02:05,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:02:32] 2025-10-12 14:02:05,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:02:32] 2025-10-12 14:02:25,532 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:02:32] 2025-10-12 14:02:26,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268485961536)>', '<ExcThread(monitor, started 140267852130048)>']
[2025-10-12 10:02:32] 2025-10-12 14:02:27,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:02:32] 2025-10-12 14:02:27,423 | INFO     | [monitor] control thread has ended
[2025-10-12 10:02:32] 2025-10-12 14:02:31,507 | INFO     | all workflow threads have been joined
[2025-10-12 10:02:32] 2025-10-12 14:02:31,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:02:32] 2025-10-12 14:02:31,508 | INFO     | traces error code: 0
[2025-10-12 10:02:32] 2025-10-12 14:02:31,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:02:32] 2025-10-12 14:02:31,800 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:02:32] 2025-10-12 14:02:31,805 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:02:32] 2025-10-12 14:02:31,808 [wrapper] pilotpid: 891408
[2025-10-12 10:02:32] 2025-10-12 14:02:31,810 [wrapper] Pilot exit status: 0
[2025-10-12 10:02:32] 2025-10-12 14:02:31,873 [wrapper] pandaids: 6839588830
[2025-10-12 10:02:32] 2025-10-12 14:02:31,986 [wrapper] cleanup supervisor_pilot 1159588 891409
[2025-10-12 10:02:32] 2025-10-12 14:02:31,989 [wrapper] Test setup, not cleaning
[2025-10-12 10:02:32] 2025-10-12 14:02:31,996 [wrapper] apfmon messages muted
[2025-10-12 10:02:32] 2025-10-12 14:02:32,002 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:02:32] 2025-10-12 14:02:32,018 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:02:32]  *** Error codes and diagnostics ***
[2025-10-12 10:02:32]     "exeErrorCode": 0,
[2025-10-12 10:02:32]     "exeErrorDiag": "",
[2025-10-12 10:02:32]     "pilotErrorCode": 0,
[2025-10-12 10:02:32]     "pilotErrorDiag": "",
[2025-10-12 10:02:32]  *** Listing of results directory ***
[2025-10-12 10:02:32] total 409084
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 01:26 pilot3.tar.gz
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 01:29 queuedata.json
[2025-10-12 10:02:32] -rwx------. 1 boincer umatlas     36292 Oct 12 01:30 runpilot2-wrapper.sh
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas       100 Oct 12 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:02:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 08:55 run_atlas
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas       105 Oct 12 08:55 job.xml
[2025-10-12 10:02:32] -rw-r--r--. 2 boincer umatlas 218820376 Oct 12 08:55 EVNT.46676267._004324.pool.root.1
[2025-10-12 10:02:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:55 start_atlas.sh
[2025-10-12 10:02:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 08:55 shared
[2025-10-12 10:02:32] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 08:55 input.tar.gz
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas         0 Oct 12 08:55 boinc_lockfile
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 08:55 pandaJob.out
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas    975512 Oct 12 08:56 agis_schedconf.cvmfs.json
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas   1560580 Oct 12 08:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:02:32] drwx------. 5 boincer umatlas      4096 Oct 12 08:56 pilot3
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 10:00 init_data.xml
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas 194395002 Oct 12 10:00 HITS.46676269._072022.pool.root.1
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas       529 Oct 12 10:00 boinc_task_state.xml
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas      1048 Oct 12 10:01 memory_monitor_summary.json
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas    335220 Oct 12 10:01 log.46676269._072022.job.log.tgz.1
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas      7810 Oct 12 10:01 heartbeat.json
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas        95 Oct 12 10:01 pilot_heartbeat.json
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 10:02 boinc_mmap_file
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas      5082 Oct 12 10:02 pilotlog.txt
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas        27 Oct 12 10:02 wrapper_checkpoint.txt
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas    553566 Oct 12 10:02 log.46676269._072022.job.log.1
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas       357 Oct 12 10:02 output.list
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas       620 Oct 12 10:02 runtime_log
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas    911360 Oct 12 10:02 result.tar.gz
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 10:02 runtime_log.err
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas       656 Oct 12 10:02 1oZNDmup3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmckiNDmtrXC0m.diag
[2025-10-12 10:02:32] -rw-r--r--. 1 boincer umatlas     22207 Oct 12 10:02 stderr.txt
[2025-10-12 10:02:32] HITS file was successfully produced:
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas 194395002 Oct 12 10:00 shared/HITS.pool.root.1
[2025-10-12 10:02:32]  *** Contents of shared directory: ***
[2025-10-12 10:02:32] total 405008
[2025-10-12 10:02:32] -rw-r--r--. 2 boincer umatlas 218820376 Oct 12 08:55 ATLAS.root_0
[2025-10-12 10:02:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:55 start_atlas.sh
[2025-10-12 10:02:32] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 08:55 input.tar.gz
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas 194395002 Oct 12 10:00 HITS.pool.root.1
[2025-10-12 10:02:32] -rw-------. 1 boincer umatlas    911360 Oct 12 10:02 result.tar.gz
10:02:33 (884046): run_atlas exited; CPU time 23313.550069
10:02:33 (884046): called boinc_finish(0)

</stderr_txt>
]]>

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