Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:33:54 (3219147): wrapper (7.7.26015): starting
23:33:54 (3219147): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 23:33:54] Arguments: --nthreads 3
[2025-10-12 23:33:54] Threads: 3
[2025-10-12 23:33:54] Checking for CVMFS
[2025-10-12 23:33:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:33:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:33:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:33:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:33:54] 2.9.2.0 1719469 4918 85744 151638 2 56 30658366 36864001 0 130560 0 3938715 99.991 169438 942 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 23:33:54] CVMFS is ok
[2025-10-12 23:33:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:33:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:33:54] Further information can be found at the LHC@home message board.
[2025-10-12 23:33:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:33:54] Checking for apptainer binary...
[2025-10-12 23:33:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:33:54] Running /usr/bin/apptainer --version
[2025-10-12 23:33:54] apptainer version 1.4.1-1.1
[2025-10-12 23:33:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:33:54] thA349
[2025-10-12 23:33:54] apptainer works
[2025-10-12 23:33:54] Set ATHENA_PROC_NUMBER=3
[2025-10-12 23:33:54] Set ATHENA_CORE_NUMBER=3
[2025-10-12 23:33:55] Starting ATLAS job with PandaID=6839591635
[2025-10-12 23:33:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:57:14]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | job 6839591635 has completed (purged errors)
[2025-10-13 00:57:14] 2025-10-12 22:56:42,245 | INFO     | overall cleanup function is called
[2025-10-13 00:57:14] 2025-10-12 22:56:43,252 | INFO     | --- collectZombieJob: --- 10, [3229315]
[2025-10-13 00:57:14] 2025-10-12 22:56:43,252 | INFO     | zombie collector waiting for pid 3229315
[2025-10-13 00:57:14] 2025-10-12 22:56:43,252 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:57:14] 2025-10-12 22:56:43,252 | INFO     | collected zombie processes
[2025-10-13 00:57:14] 2025-10-12 22:56:43,252 | INFO     | will attempt to kill all subprocesses of pid=3229315
[2025-10-13 00:57:14] 2025-10-12 22:56:43,294 | INFO     | process IDs to be killed: [3229315] (in reverse order)
[2025-10-13 00:57:14] 2025-10-12 22:56:43,319 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:57:14] 2025-10-12 22:56:43,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:57:14] 2025-10-12 22:56:43,320 | INFO     | did not find any defunct processes belonging to 3229315
[2025-10-13 00:57:14] 2025-10-12 22:56:43,321 | INFO     | did not find any defunct processes belonging to 3229315
[2025-10-13 00:57:14] 2025-10-12 22:56:43,321 | INFO     | ready for new job
[2025-10-13 00:57:14] 2025-10-12 22:56:43,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:57:14] 2025-10-12 22:56:43,322 | INFO     | ***************************************
[2025-10-13 00:57:14] 2025-10-12 22:56:43,322 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:57:14] 2025-10-12 22:56:43,322 | INFO     | ***************************************
[2025-10-13 00:57:14] 2025-10-12 22:56:43,322 | INFO     | 
[2025-10-13 00:57:14] 2025-10-12 22:56:43,323 | INFO     | architecture information:
[2025-10-13 00:57:14] 2025-10-12 22:56:43,323 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:57:14] 2025-10-12 22:56:43,332 | INFO     | cat /etc/os-release:
[2025-10-13 00:57:14] NAME="CentOS Linux"
[2025-10-13 00:57:14] VERSION="7 (Core)"
[2025-10-13 00:57:14] ID="centos"
[2025-10-13 00:57:14] ID_LIKE="rhel fedora"
[2025-10-13 00:57:14] VERSION_ID="7"
[2025-10-13 00:57:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:57:14] ANSI_COLOR="0;31"
[2025-10-13 00:57:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:57:14] HOME_URL="https://www.centos.org/"
[2025-10-13 00:57:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:57:14] 
[2025-10-13 00:57:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:57:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:57:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:57:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:57:14] 
[2025-10-13 00:57:14] 2025-10-12 22:56:43,332 | INFO     | ***************************************
[2025-10-13 00:57:14] 2025-10-12 22:56:43,835 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 00:57:14] 2025-10-12 22:56:43,848 | INFO     | sufficient remaining disk space (273892245504 B)
[2025-10-13 00:57:14] 2025-10-12 22:56:43,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:57:14] 2025-10-12 22:56:43,848 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:57:14] 2025-10-12 22:56:43,848 | INFO     | update_server=False
[2025-10-13 00:57:14] 2025-10-12 22:56:43,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:57:14] 2025-10-12 22:56:43,848 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:57:14] 2025-10-12 22:56:43,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:57:14] 2025-10-12 22:56:43,849 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 00:57:14] 2025-10-12 22:56:43,849 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:57:14] 2025-10-12 22:56:43,849 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:57:14] 2025-10-12 22:56:43,849 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:57:14] 2025-10-12 22:56:44,146 | INFO     | all data control threads have been joined
[2025-10-13 00:57:14] 2025-10-12 22:56:44,374 | INFO     | all job control threads have been joined
[2025-10-13 00:57:14] 2025-10-12 22:56:44,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:57:14] 2025-10-12 22:56:44,469 | INFO     | aborting loop
[2025-10-13 00:57:14] 2025-10-12 22:56:44,854 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:44,854 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,008 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,044 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,123 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,152 | INFO     | [data] control thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,314 | INFO     | all payload control threads have been joined
[2025-10-13 00:57:14] 2025-10-12 22:56:45,358 | INFO     | [job] validate thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,379 | INFO     | [job] control thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,445 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,475 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,490 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,637 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:45,854 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:46,320 | INFO     | [payload] control thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:46,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:57:14] 2025-10-12 22:56:50,933 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:56:54,247 | INFO     | job.realtimelogging is not enabled
[2025-10-13 00:57:14] 2025-10-12 22:56:55,253 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:57:14] 2025-10-12 22:57:07,745 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:57:14] 2025-10-12 22:57:09,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140047847298880)>', '<ExcThread(monitor, started 140047139469056)>']
[2025-10-13 00:57:14] 2025-10-12 22:57:09,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:57:14] 2025-10-12 22:57:09,979 | INFO     | [monitor] control thread has ended
[2025-10-13 00:57:14] 2025-10-12 22:57:14,566 | INFO     | all workflow threads have been joined
[2025-10-13 00:57:14] 2025-10-12 22:57:14,566 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:57:14] 2025-10-12 22:57:14,566 | INFO     | traces error code: 0
[2025-10-13 00:57:14] 2025-10-12 22:57:14,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:57:14] 2025-10-12 22:57:14,617 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:57:14] 2025-10-12 22:57:14,620 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:57:14] 2025-10-12 22:57:14,622 [wrapper] pilotpid: 3222870
[2025-10-13 00:57:14] 2025-10-12 22:57:14,625 [wrapper] Pilot exit status: 0
[2025-10-13 00:57:14] 2025-10-12 22:57:14,633 [wrapper] pandaids: 6839591635
[2025-10-13 00:57:14] 2025-10-12 22:57:14,649 [wrapper] cleanup supervisor_pilot 3241676 3222871
[2025-10-13 00:57:14] 2025-10-12 22:57:14,652 [wrapper] Test setup, not cleaning
[2025-10-13 00:57:14] 2025-10-12 22:57:14,655 [wrapper] apfmon messages muted
[2025-10-13 00:57:14] 2025-10-12 22:57:14,657 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:57:14] 2025-10-12 22:57:14,659 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:57:14]  *** Error codes and diagnostics ***
[2025-10-13 00:57:14]     "exeErrorCode": 0,
[2025-10-13 00:57:14]     "exeErrorDiag": "",
[2025-10-13 00:57:14]     "pilotErrorCode": 0,
[2025-10-13 00:57:14]     "pilotErrorDiag": "",
[2025-10-13 00:57:14]  *** Listing of results directory ***
[2025-10-13 00:57:14] total 413128
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 00:57:14] -rwx------ 1 boinc boinc     36292 Oct 12 08:38 runpilot2-wrapper.sh
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:38 queuedata.json
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:57:14] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:33 run_atlas
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:33 job.xml
[2025-10-13 00:57:14] -rw-r--r-- 2 boinc boinc 220931728 Oct 12 23:33 EVNT.46676267._004519.pool.root.1
[2025-10-13 00:57:14] -rw-r--r-- 2 boinc boinc    569679 Oct 12 23:33 input.tar.gz
[2025-10-13 00:57:14] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:33 start_atlas.sh
[2025-10-13 00:57:14] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:33 shared
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:33 boinc_setup_complete
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc      6446 Oct 12 23:33 init_data.xml
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:33 boinc_lockfile
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc      2549 Oct 12 23:33 pandaJob.out
[2025-10-13 00:57:14] -rw------- 1 boinc boinc    975528 Oct 12 23:34 agis_schedconf.cvmfs.json
[2025-10-13 00:57:14] -rw------- 1 boinc boinc   1560580 Oct 12 23:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:57:14] drwx------ 5 boinc boinc      4096 Oct 12 23:34 pilot3
[2025-10-13 00:57:14] -rw------- 1 boinc boinc 196271690 Oct 13 00:56 HITS.46676269._072899.pool.root.1
[2025-10-13 00:57:14] -rw------- 1 boinc boinc        95 Oct 13 00:56 pilot_heartbeat.json
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc       529 Oct 13 00:56 boinc_task_state.xml
[2025-10-13 00:57:14] -rw------- 1 boinc boinc      1013 Oct 13 00:56 memory_monitor_summary.json
[2025-10-13 00:57:14] -rw------- 1 boinc boinc    245030 Oct 13 00:56 log.46676269._072899.job.log.tgz.1
[2025-10-13 00:57:14] -rw------- 1 boinc boinc      7749 Oct 13 00:56 heartbeat.json
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc        27 Oct 13 00:57 wrapper_checkpoint.txt
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc      8192 Oct 13 00:57 boinc_mmap_file
[2025-10-13 00:57:14] -rw------- 1 boinc boinc      4628 Oct 13 00:57 pilotlog.txt
[2025-10-13 00:57:14] -rw------- 1 boinc boinc    727820 Oct 13 00:57 log.46676269._072899.job.log.1
[2025-10-13 00:57:14] -rw------- 1 boinc boinc       357 Oct 13 00:57 output.list
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc       620 Oct 13 00:57 runtime_log
[2025-10-13 00:57:14] -rw------- 1 boinc boinc    993280 Oct 13 00:57 result.tar.gz
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc      8777 Oct 13 00:57 runtime_log.err
[2025-10-13 00:57:14] -rw------- 1 boinc boinc       658 Oct 13 00:57 ZOJNDmwt4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVtiNDmt3CYcm.diag
[2025-10-13 00:57:14] -rw-r--r-- 1 boinc boinc     11949 Oct 13 00:57 stderr.txt
[2025-10-13 00:57:14] HITS file was successfully produced:
[2025-10-13 00:57:14] -rw------- 1 boinc boinc 196271690 Oct 13 00:56 shared/HITS.pool.root.1
[2025-10-13 00:57:14]  *** Contents of shared directory: ***
[2025-10-13 00:57:14] total 408984
[2025-10-13 00:57:14] -rw-r--r-- 2 boinc boinc 220931728 Oct 12 23:33 ATLAS.root_0
[2025-10-13 00:57:14] -rw-r--r-- 2 boinc boinc    569679 Oct 12 23:33 input.tar.gz
[2025-10-13 00:57:14] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:33 start_atlas.sh
[2025-10-13 00:57:14] -rw------- 1 boinc boinc 196271690 Oct 13 00:56 HITS.pool.root.1
[2025-10-13 00:57:14] -rw------- 1 boinc boinc    993280 Oct 13 00:57 result.tar.gz
00:57:36 (3219147): run_atlas exited; CPU time 14205.438925
00:57:36 (3219147): called boinc_finish(0)

</stderr_txt>
]]>

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