Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
08:57:51 (2929660): wrapper (7.7.26015): starting
08:57:51 (2929660): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 08:57:51] Arguments: --nthreads 12
[2025-10-13 08:57:51] Threads: 12
[2025-10-13 08:57:51] Checking for CVMFS
[2025-10-13 08:57:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:57:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:57:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:57:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:57:51] 2.12.7.0 2633540 1083 55688 151652 0 56 3388465 4096000 0 130560 0 802762 99.989 39961 44 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 08:57:51] CVMFS is ok
[2025-10-13 08:57:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:57:51] Checking for apptainer binary...
[2025-10-13 08:57:51] apptainer is not installed, using version from CVMFS
[2025-10-13 08:57:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:57:52] lithium
[2025-10-13 08:57:52] apptainer works
[2025-10-13 08:57:52] Set ATHENA_PROC_NUMBER=12
[2025-10-13 08:57:52] Set ATHENA_CORE_NUMBER=12
[2025-10-13 08:57:52] Starting ATLAS job with PandaID=6839870058
[2025-10-13 08:57:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:36:28]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:36:28]  is_tar=False
[2025-10-13 10:36:28]  lfn=log.46676269._077032.job.log.tgz.1
[2025-10-13 10:36:28]  mtime=0
[2025-10-13 10:36:28]  protocol_id=None
[2025-10-13 10:36:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 10:36:28]  replicas=None
[2025-10-13 10:36:28]  scope=mc23_13p6TeV
[2025-10-13 10:36:28]  status=None
[2025-10-13 10:36:28]  status_code=0
[2025-10-13 10:36:28]  storage_token=
[2025-10-13 10:36:28]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6839870058/log.46676269._077032.job.log.tgz.1
[2025-10-13 10:36:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/91/log.46676269._077032.job.log.tgz.1
[2025-10-13 10:36:28]  workdir=None
[2025-10-13 10:36:28] ]
[2025-10-13 10:36:28] 2025-10-13 08:35:53,197 | INFO     | transferring file log.46676269._077032.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6839870058/log.46676269._077032.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 10:36:28] 2025-10-13 08:35:53,197 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6839870058/log.46676269._077032.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-13 10:36:28] 2025-10-13 08:35:53,210 | INFO     | adding to output.list: log.46676269._077032.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/91/log.46676269._077032.job.log.tg
[2025-10-13 10:36:28] 2025-10-13 08:35:53,210 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 10:36:28] 2025-10-13 08:35:53,210 | INFO     | summary of transferred files:
[2025-10-13 10:36:28] 2025-10-13 08:35:53,210 | INFO     |  -- lfn=log.46676269._077032.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 10:36:28] 2025-10-13 08:35:53,211 | INFO     | stage-out finished correctly
[2025-10-13 10:36:28] 2025-10-13 08:35:53,292 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 10:36:28] 2025-10-13 08:35:53,363 | INFO     | job 6839870058 has state=finished
[2025-10-13 10:36:28] 2025-10-13 08:35:53,363 | INFO     | preparing for final server update for job 6839870058 in state='finished'
[2025-10-13 10:36:28] 2025-10-13 08:35:53,364 | INFO     | this job has now completed (state=finished)
[2025-10-13 10:36:28] 2025-10-13 08:35:53,364 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 10:36:28] 2025-10-13 08:35:53,364 | INFO     | log transfer has been attempted: DONE
[2025-10-13 10:36:28] 2025-10-13 08:35:53,364 | INFO     | job 6839870058 has finished - writing final server update
[2025-10-13 10:36:28] 2025-10-13 08:35:53,364 | INFO     | total number of processed events: 400 (read)
[2025-10-13 10:36:28] 2025-10-13 08:35:53,366 | INFO     | executing command: lscpu
[2025-10-13 10:36:28] 2025-10-13 08:35:53,400 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 10:36:28] 2025-10-13 08:35:53,450 | INFO     | time since job start (5869s) is within the limit (172800.0s)
[2025-10-13 10:36:28] 2025-10-13 08:35:55,031 | WARNING  | process 2940068 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 10:36:28] 2025-10-13 08:35:55,031 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839870058/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:36:28] 2025-10-13 08:35:55,113 | INFO     | number of running child processes to parent process 2940068: 1
[2025-10-13 10:36:28] 2025-10-13 08:35:55,114 | INFO     | maximum number of monitored processes: 6
[2025-10-13 10:36:28] 2025-10-13 08:35:55,454 | INFO     | time since job start (5871s) is within the limit (172800.0s)
[2025-10-13 10:36:28] 2025-10-13 08:35:56,145 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 10:36:28] 2025-10-13 08:35:56,146 | INFO     | found 8 cores (4 cores per socket, 2 sockets) HT, CPU MHz: 2273.1753124999996
[2025-10-13 10:36:28] 2025-10-13 08:35:56,148 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839870058/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:36:28] 2025-10-13 08:35:56,149 | INFO     | extracted standard info from prmon json
[2025-10-13 10:36:28] 2025-10-13 08:35:56,149 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 10:36:28] 2025-10-13 08:35:56,149 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 10:36:28] 2025-10-13 08:35:56,149 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 10:36:28] 2025-10-13 08:35:56,149 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 10:36:28] 2025-10-13 08:35:56,151 | INFO     | fitting pss+swap vs Time
[2025-10-13 10:36:28] 2025-10-13 08:35:56,152 | INFO     | sum of square deviations: 218571540.0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,152 | INFO     | sum of deviations: -7688384490.0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,152 | INFO     | mean x: 1760341695.0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,152 | INFO     | mean y: 2759164.6516853934
[2025-10-13 10:36:28] 2025-10-13 08:35:56,153 | INFO     | -- intersect: 61923829881.07849
[2025-10-13 10:36:28] 2025-10-13 08:35:56,153 | INFO     | intersect: 61923829881.07849
[2025-10-13 10:36:28] 2025-10-13 08:35:56,153 | INFO     | chi2: 0.11937918287099991
[2025-10-13 10:36:28] 2025-10-13 08:35:56,153 | INFO     | -- intersect: 61923829881.07849
[2025-10-13 10:36:28] 2025-10-13 08:35:56,153 | INFO     | current memory leak: -35.18 B/s (using 89 data points, chi2=0.12)
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | could have reported an average CPU frequency of 2589 MHz (7 samples)
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | ..............................
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | . Timing measurements:
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | . get job = 0 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | . initial setup = 5 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | . payload setup = 5 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | . stage-in = 0 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | . payload execution = 5845 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,154 | INFO     | . stage-out = 0 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,155 | INFO     | . log creation = 0 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,155 | INFO     | ..............................
[2025-10-13 10:36:28] 2025-10-13 08:35:56,234 | INFO     | 
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | job summary report
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | --------------------------------------------------
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | PanDA job id: 6839870058
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | task id: 46676269
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | errors: (none)
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | pilot state: finished 
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | transexitcode: 0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | exeerrorcode: 0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,235 | INFO     | exeerrordiag: 
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | exitcode: 0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | exitmsg: OK
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | cpuconsumptiontime: 64356 s
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | nevents: 400
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | neventsw: 0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | pid: 2940068
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | pgrp: 2940068
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | corecount: 12
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | event service: False
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | sizes: {0: 2348693, 1: 2348892, 4: 2349154, 12: 2349182, 5854: 2385010, 5855: 2385010, 5857: 2385332}
[2025-10-13 10:36:28] 2025-10-13 08:35:56,236 | INFO     | --------------------------------------------------
[2025-10-13 10:36:28] 2025-10-13 08:35:56,237 | INFO     | 
[2025-10-13 10:36:28] 2025-10-13 08:35:56,237 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-13 10:36:28] 2025-10-13 08:35:56,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,257 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,257 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,257 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,257 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:36:28] 2025-10-13 08:35:56,259 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,259 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:36:28] 2025-10-13 08:35:56,259 | INFO     | job 6839870058 has completed (purged errors)
[2025-10-13 10:36:28] 2025-10-13 08:35:56,259 | INFO     | overall cleanup function is called
[2025-10-13 10:36:28] 2025-10-13 08:35:57,266 | INFO     | --- collectZombieJob: --- 10, [2940068]
[2025-10-13 10:36:28] 2025-10-13 08:35:57,267 | INFO     | zombie collector waiting for pid 2940068
[2025-10-13 10:36:28] 2025-10-13 08:35:57,267 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:36:28] 2025-10-13 08:35:57,267 | INFO     | collected zombie processes
[2025-10-13 10:36:28] 2025-10-13 08:35:57,267 | INFO     | will attempt to kill all subprocesses of pid=2940068
[2025-10-13 10:36:28] 2025-10-13 08:35:57,350 | INFO     | process IDs to be killed: [2940068] (in reverse order)
[2025-10-13 10:36:28] 2025-10-13 08:35:57,389 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:36:28] 2025-10-13 08:35:57,389 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:36:28] 2025-10-13 08:35:57,392 | INFO     | did not find any defunct processes belonging to 2940068
[2025-10-13 10:36:28] 2025-10-13 08:35:57,395 | INFO     | did not find any defunct processes belonging to 2940068
[2025-10-13 10:36:28] 2025-10-13 08:35:57,395 | INFO     | ready for new job
[2025-10-13 10:36:28] 2025-10-13 08:35:57,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:36:28] 2025-10-13 08:35:57,397 | INFO     | ***************************************
[2025-10-13 10:36:28] 2025-10-13 08:35:57,397 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:36:28] 2025-10-13 08:35:57,397 | INFO     | ***************************************
[2025-10-13 10:36:28] 2025-10-13 08:35:57,397 | INFO     | 
[2025-10-13 10:36:28] 2025-10-13 08:35:57,419 | INFO     | architecture information:
[2025-10-13 10:36:28] 2025-10-13 08:35:57,419 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:36:28] 2025-10-13 08:35:57,430 | INFO     | cat /etc/os-release:
[2025-10-13 10:36:28] NAME="CentOS Linux"
[2025-10-13 10:36:28] VERSION="7 (Core)"
[2025-10-13 10:36:28] ID="centos"
[2025-10-13 10:36:28] ID_LIKE="rhel fedora"
[2025-10-13 10:36:28] VERSION_ID="7"
[2025-10-13 10:36:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:36:28] ANSI_COLOR="0;31"
[2025-10-13 10:36:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:36:28] HOME_URL="https://www.centos.org/"
[2025-10-13 10:36:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:36:28] 
[2025-10-13 10:36:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:36:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:36:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:36:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:36:28] 
[2025-10-13 10:36:28] 2025-10-13 08:35:57,430 | INFO     | ***************************************
[2025-10-13 10:36:28] 2025-10-13 08:35:57,933 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-13 10:36:28] 2025-10-13 08:35:57,945 | INFO     | sufficient remaining disk space (33496760320 B)
[2025-10-13 10:36:28] 2025-10-13 08:35:57,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:36:28] 2025-10-13 08:35:57,946 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:36:28] 2025-10-13 08:35:57,946 | INFO     | update_server=False
[2025-10-13 10:36:28] 2025-10-13 08:35:57,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:36:28] 2025-10-13 08:35:57,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:36:28] 2025-10-13 08:35:58,121 | INFO     | all data control threads have been joined
[2025-10-13 10:36:28] 2025-10-13 08:35:58,360 | INFO     | all payload control threads have been joined
[2025-10-13 10:36:28] 2025-10-13 08:35:58,445 | INFO     | all job control threads have been joined
[2025-10-13 10:36:28] 2025-10-13 08:35:58,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:36:28] 2025-10-13 08:35:58,621 | INFO     | aborting loop
[2025-10-13 10:36:28] 2025-10-13 08:35:58,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:36:28] 2025-10-13 08:35:58,949 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:58,952 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:58,973 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,017 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,126 | INFO     | [data] control thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,365 | INFO     | [payload] control thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:36:28] 2025-10-13 08:35:59,402 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,450 | INFO     | [job] control thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,510 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,627 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,821 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:35:59,912 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:36:00,037 | INFO     | [job] validate thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:36:00,249 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:36:00,803 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:36:03,375 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:36:28] 2025-10-13 08:36:12,698 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:36:28] 2025-10-13 08:36:12,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139621466756928)>', '<ExcThread(monitor, started 139621149153024)>']
[2025-10-13 10:36:28] 2025-10-13 08:36:17,761 | INFO     | all workflow threads have been joined
[2025-10-13 10:36:28] 2025-10-13 08:36:17,762 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:36:28] 2025-10-13 08:36:17,762 | INFO     | traces error code: 0
[2025-10-13 10:36:28] 2025-10-13 08:36:17,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:36:28] 2025-10-13 08:36:28,660 | INFO     | PID=2933479 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:36:28] 2025-10-13 08:36:28,660 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:36:28] 2025-10-13 08:36:28,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:36:28] 2025-10-13 08:36:28,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:36:28] 2025-10-13 08:36:28,660 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:36:28] 2025-10-13 08:36:28,660 | INFO     | [monitor] control thread has ended
[2025-10-13 10:36:28] 2025-10-13 08:36:28,750 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:36:28] 2025-10-13 08:36:28,752 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:36:28] 2025-10-13 08:36:28,754 [wrapper] pilotpid: 2933479
[2025-10-13 10:36:28] 2025-10-13 08:36:28,756 [wrapper] Pilot exit status: 0
[2025-10-13 10:36:28] 2025-10-13 08:36:28,765 [wrapper] pandaids: 6839870058
[2025-10-13 10:36:28] 2025-10-13 08:36:28,790 [wrapper] cleanup supervisor_pilot 2951853 2933480
[2025-10-13 10:36:28] 2025-10-13 08:36:28,792 [wrapper] Test setup, not cleaning
[2025-10-13 10:36:28] 2025-10-13 08:36:28,795 [wrapper] apfmon messages muted
[2025-10-13 10:36:28] 2025-10-13 08:36:28,797 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:36:28] 2025-10-13 08:36:28,799 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:36:28]  *** Error codes and diagnostics ***
[2025-10-13 10:36:28]     "exeErrorCode": 0,
[2025-10-13 10:36:28]     "exeErrorDiag": "",
[2025-10-13 10:36:28]     "pilotErrorCode": 0,
[2025-10-13 10:36:28]     "pilotErrorDiag": "",
[2025-10-13 10:36:28]  *** Listing of results directory ***
[2025-10-13 10:36:28] total 414108
[2025-10-13 10:36:28] -rwx------ 1 boinc boinc     36292 Okt 12 13:23 runpilot2-wrapper.sh
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc    557409 Okt 12 13:23 pilot3.tar.gz
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc      5112 Okt 12 13:23 queuedata.json
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc       100 Okt 13 08:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:36:28] -rwxr-xr-x 1 boinc boinc      7986 Okt 13 08:57 run_atlas
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc       105 Okt 13 08:57 job.xml
[2025-10-13 10:36:28] -rw-r--r-- 2 boinc boinc     15120 Okt 13 08:57 start_atlas.sh
[2025-10-13 10:36:28] drwxrwx--x 2 boinc boinc      4096 Okt 13 08:57 shared
[2025-10-13 10:36:28] -rw-r--r-- 2 boinc boinc    569678 Okt 13 08:57 input.tar.gz
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc      6048 Okt 13 08:57 init_data.xml
[2025-10-13 10:36:28] -rw-r--r-- 2 boinc boinc 222850112 Okt 13 08:57 EVNT.46676267._003674.pool.root.1
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc         0 Okt 13 08:57 boinc_lockfile
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc      2550 Okt 13 08:57 pandaJob.out
[2025-10-13 10:36:28] -rw------- 1 boinc boinc    972849 Okt 13 08:58 agis_schedconf.cvmfs.json
[2025-10-13 10:36:28] -rw------- 1 boinc boinc   1560580 Okt 13 08:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:36:28] drwx------ 5 boinc boinc      4096 Okt 13 08:58 pilot3
[2025-10-13 10:36:28] -rw------- 1 boinc boinc 194799518 Okt 13 10:35 HITS.46676269._077032.pool.root.1
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc       530 Okt 13 10:35 boinc_task_state.xml
[2025-10-13 10:36:28] -rw------- 1 boinc boinc      1067 Okt 13 10:35 memory_monitor_summary.json
[2025-10-13 10:36:28] -rw------- 1 boinc boinc        95 Okt 13 10:35 pilot_heartbeat.json
[2025-10-13 10:36:28] -rw------- 1 boinc boinc    410811 Okt 13 10:35 log.46676269._077032.job.log.tgz.1
[2025-10-13 10:36:28] -rw------- 1 boinc boinc      7837 Okt 13 10:35 heartbeat.json
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc      8192 Okt 13 10:36 boinc_mmap_file
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc        27 Okt 13 10:36 wrapper_checkpoint.txt
[2025-10-13 10:36:28] -rw------- 1 boinc boinc       747 Okt 13 10:36 pilotlog.txt
[2025-10-13 10:36:28] -rw------- 1 boinc boinc    835592 Okt 13 10:36 log.46676269._077032.job.log.1
[2025-10-13 10:36:28] -rw------- 1 boinc boinc       357 Okt 13 10:36 output.list
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc       620 Okt 13 10:36 runtime_log
[2025-10-13 10:36:28] -rw------- 1 boinc boinc   1269760 Okt 13 10:36 result.tar.gz
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc      8760 Okt 13 10:36 runtime_log.err
[2025-10-13 10:36:28] -rw------- 1 boinc boinc       653 Okt 13 10:36 oj1NDm5L9R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKkTMDmwGY6Wn.diag
[2025-10-13 10:36:28] -rw-r--r-- 1 boinc boinc     21312 Okt 13 10:36 stderr.txt
[2025-10-13 10:36:28] HITS file was successfully produced:
[2025-10-13 10:36:28] -rw------- 1 boinc boinc 194799518 Okt 13 10:35 shared/HITS.pool.root.1
[2025-10-13 10:36:28]  *** Contents of shared directory: ***
[2025-10-13 10:36:28] total 409688
[2025-10-13 10:36:28] -rw-r--r-- 2 boinc boinc     15120 Okt 13 08:57 start_atlas.sh
[2025-10-13 10:36:28] -rw-r--r-- 2 boinc boinc    569678 Okt 13 08:57 input.tar.gz
[2025-10-13 10:36:28] -rw-r--r-- 2 boinc boinc 222850112 Okt 13 08:57 ATLAS.root_0
[2025-10-13 10:36:28] -rw------- 1 boinc boinc 194799518 Okt 13 10:35 HITS.pool.root.1
[2025-10-13 10:36:28] -rw------- 1 boinc boinc   1269760 Okt 13 10:36 result.tar.gz
10:36:29 (2929660): run_atlas exited; CPU time 64027.436790
10:36:29 (2929660): called boinc_finish(0)

</stderr_txt>
]]>

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