Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:58:39 (2255692): wrapper (7.7.26015): starting
14:58:39 (2255692): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 14:58:39] Arguments: --nthreads 3
[2025-10-12 14:58:39] Threads: 3
[2025-10-12 14:58:39] Checking for CVMFS
[2025-10-12 14:58:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:58:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:58:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:58:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:58:39] 2.9.2.0 962579 4273 84104 151620 1 57 2772551 36864001 0 130560 0 3413521 99.991 144276 807 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 14:58:39] CVMFS is ok
[2025-10-12 14:58:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:58:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:58:39] Further information can be found at the LHC@home message board.
[2025-10-12 14:58:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:58:39] Checking for apptainer binary...
[2025-10-12 14:58:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:58:39] Running /usr/bin/apptainer --version
[2025-10-12 14:58:39] apptainer version 1.4.1-1.1
[2025-10-12 14:58:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:58:40] thA330b
[2025-10-12 14:58:40] apptainer works
[2025-10-12 14:58:40] Set ATHENA_PROC_NUMBER=3
[2025-10-12 14:58:40] Set ATHENA_CORE_NUMBER=3
[2025-10-12 14:58:40] Starting ATLAS job with PandaID=6839661066
[2025-10-12 14:58:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:19:57]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:19:57] 2025-10-12 14:19:25,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:19:57] 2025-10-12 14:19:25,423 | INFO     | job 6839661066 has completed (purged errors)
[2025-10-12 16:19:57] 2025-10-12 14:19:25,423 | INFO     | overall cleanup function is called
[2025-10-12 16:19:57] 2025-10-12 14:19:26,430 | INFO     | --- collectZombieJob: --- 10, [2265840]
[2025-10-12 16:19:57] 2025-10-12 14:19:26,430 | INFO     | zombie collector waiting for pid 2265840
[2025-10-12 16:19:57] 2025-10-12 14:19:26,430 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:19:57] 2025-10-12 14:19:26,430 | INFO     | collected zombie processes
[2025-10-12 16:19:57] 2025-10-12 14:19:26,430 | INFO     | will attempt to kill all subprocesses of pid=2265840
[2025-10-12 16:19:57] 2025-10-12 14:19:26,479 | INFO     | process IDs to be killed: [2265840] (in reverse order)
[2025-10-12 16:19:57] 2025-10-12 14:19:26,505 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:19:57] 2025-10-12 14:19:26,505 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:19:57] 2025-10-12 14:19:26,506 | INFO     | did not find any defunct processes belonging to 2265840
[2025-10-12 16:19:57] 2025-10-12 14:19:26,508 | INFO     | did not find any defunct processes belonging to 2265840
[2025-10-12 16:19:57] 2025-10-12 14:19:26,508 | INFO     | ready for new job
[2025-10-12 16:19:57] 2025-10-12 14:19:26,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:19:57] 2025-10-12 14:19:26,508 | INFO     | ***************************************
[2025-10-12 16:19:57] 2025-10-12 14:19:26,509 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:19:57] 2025-10-12 14:19:26,509 | INFO     | ***************************************
[2025-10-12 16:19:57] 2025-10-12 14:19:26,509 | INFO     | 
[2025-10-12 16:19:57] 2025-10-12 14:19:26,509 | INFO     | architecture information:
[2025-10-12 16:19:57] 2025-10-12 14:19:26,509 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:19:57] 2025-10-12 14:19:26,517 | INFO     | cat /etc/os-release:
[2025-10-12 16:19:57] NAME="CentOS Linux"
[2025-10-12 16:19:57] VERSION="7 (Core)"
[2025-10-12 16:19:57] ID="centos"
[2025-10-12 16:19:57] ID_LIKE="rhel fedora"
[2025-10-12 16:19:57] VERSION_ID="7"
[2025-10-12 16:19:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:19:57] ANSI_COLOR="0;31"
[2025-10-12 16:19:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:19:57] HOME_URL="https://www.centos.org/"
[2025-10-12 16:19:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:19:57] 
[2025-10-12 16:19:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:19:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:19:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:19:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:19:57] 
[2025-10-12 16:19:57] 2025-10-12 14:19:26,517 | INFO     | ***************************************
[2025-10-12 16:19:57] 2025-10-12 14:19:27,021 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 16:19:57] 2025-10-12 14:19:27,032 | INFO     | sufficient remaining disk space (258965766144 B)
[2025-10-12 16:19:57] 2025-10-12 14:19:27,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:19:57] 2025-10-12 14:19:27,032 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:19:57] 2025-10-12 14:19:27,032 | INFO     | update_server=False
[2025-10-12 16:19:57] 2025-10-12 14:19:27,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:19:57] 2025-10-12 14:19:27,032 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 16:19:57] 2025-10-12 14:19:27,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:19:57] 2025-10-12 14:19:27,033 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:19:57] 2025-10-12 14:19:27,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:19:57] 2025-10-12 14:19:27,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:19:57] 2025-10-12 14:19:27,253 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:19:57] 2025-10-12 14:19:27,254 | INFO     | aborting loop
[2025-10-12 16:19:57] 2025-10-12 14:19:27,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:19:57] 2025-10-12 14:19:27,577 | INFO     | all data control threads have been joined
[2025-10-12 16:19:57] 2025-10-12 14:19:28,038 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:28,038 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:28,062 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:28,259 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:28,504 | INFO     | all payload control threads have been joined
[2025-10-12 16:19:57] 2025-10-12 14:19:28,559 | INFO     | all job control threads have been joined
[2025-10-12 16:19:57] 2025-10-12 14:19:28,582 | INFO     | [data] control thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:28,619 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:28,879 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:28,917 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:29,409 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:29,411 | INFO     | [job] validate thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:29,431 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:29,509 | INFO     | [payload] control thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:29,565 | INFO     | [job] control thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:29,576 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:29,707 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:19:57] 2025-10-12 14:19:33,714 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:37,888 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:19:57] 2025-10-12 14:19:38,893 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:19:57] 2025-10-12 14:19:51,153 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:19:57] 2025-10-12 14:19:52,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718293817152)>', '<ExcThread(monitor, started 140717674452736)>']
[2025-10-12 16:19:57] 2025-10-12 14:19:53,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:19:57] 2025-10-12 14:19:53,164 | INFO     | [monitor] control thread has ended
[2025-10-12 16:19:57] 2025-10-12 14:19:57,749 | INFO     | all workflow threads have been joined
[2025-10-12 16:19:57] 2025-10-12 14:19:57,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:19:57] 2025-10-12 14:19:57,749 | INFO     | traces error code: 0
[2025-10-12 16:19:57] 2025-10-12 14:19:57,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:19:57] 2025-10-12 14:19:57,800 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:19:57] 2025-10-12 14:19:57,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:19:57] 2025-10-12 14:19:57,804 [wrapper] pilotpid: 2259410
[2025-10-12 16:19:57] 2025-10-12 14:19:57,807 [wrapper] Pilot exit status: 0
[2025-10-12 16:19:57] 2025-10-12 14:19:57,814 [wrapper] pandaids: 6839661066
[2025-10-12 16:19:57] 2025-10-12 14:19:57,831 [wrapper] cleanup supervisor_pilot 2277906 2259411
[2025-10-12 16:19:57] 2025-10-12 14:19:57,834 [wrapper] Test setup, not cleaning
[2025-10-12 16:19:57] 2025-10-12 14:19:57,836 [wrapper] apfmon messages muted
[2025-10-12 16:19:57] 2025-10-12 14:19:57,838 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:19:57] 2025-10-12 14:19:57,840 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:19:57]  *** Error codes and diagnostics ***
[2025-10-12 16:19:57]     "exeErrorCode": 0,
[2025-10-12 16:19:57]     "exeErrorDiag": "",
[2025-10-12 16:19:57]     "pilotErrorCode": 0,
[2025-10-12 16:19:57]     "pilotErrorDiag": "",
[2025-10-12 16:19:57]  *** Listing of results directory ***
[2025-10-12 16:19:57] total 408252
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc    557409 Oct 12 09:58 pilot3.tar.gz
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc      5112 Oct 12 10:29 queuedata.json
[2025-10-12 16:19:57] -rwx------ 1 boinc boinc     36292 Oct 12 10:30 runpilot2-wrapper.sh
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc       100 Oct 12 14:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:19:57] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 14:58 run_atlas
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc       105 Oct 12 14:58 job.xml
[2025-10-12 16:19:57] -rw-r--r-- 2 boinc boinc 219350151 Oct 12 14:58 EVNT.46676267._003531.pool.root.1
[2025-10-12 16:19:57] -rw-r--r-- 2 boinc boinc    569682 Oct 12 14:58 input.tar.gz
[2025-10-12 16:19:57] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:58 start_atlas.sh
[2025-10-12 16:19:57] drwxrwx--x 2 boinc boinc      4096 Oct 12 14:58 shared
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:58 boinc_setup_complete
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc      6439 Oct 12 14:58 init_data.xml
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:58 boinc_lockfile
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc      2550 Oct 12 14:58 pandaJob.out
[2025-10-12 16:19:57] -rw------- 1 boinc boinc    975512 Oct 12 14:58 agis_schedconf.cvmfs.json
[2025-10-12 16:19:57] -rw------- 1 boinc boinc   1560580 Oct 12 14:58 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:19:57] drwx------ 5 boinc boinc      4096 Oct 12 14:58 pilot3
[2025-10-12 16:19:57] -rw------- 1 boinc boinc 192874540 Oct 12 16:18 HITS.46676269._074204.pool.root.1
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc       529 Oct 12 16:19 boinc_task_state.xml
[2025-10-12 16:19:57] -rw------- 1 boinc boinc        95 Oct 12 16:19 pilot_heartbeat.json
[2025-10-12 16:19:57] -rw------- 1 boinc boinc      1016 Oct 12 16:19 memory_monitor_summary.json
[2025-10-12 16:19:57] -rw------- 1 boinc boinc    255270 Oct 12 16:19 log.46676269._074204.job.log.tgz.1
[2025-10-12 16:19:57] -rw------- 1 boinc boinc      7765 Oct 12 16:19 heartbeat.json
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc      8192 Oct 12 16:19 boinc_mmap_file
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc        27 Oct 12 16:19 wrapper_checkpoint.txt
[2025-10-12 16:19:57] -rw------- 1 boinc boinc      4628 Oct 12 16:19 pilotlog.txt
[2025-10-12 16:19:57] -rw------- 1 boinc boinc    712219 Oct 12 16:19 log.46676269._074204.job.log.1
[2025-10-12 16:19:57] -rw------- 1 boinc boinc       357 Oct 12 16:19 output.list
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc       620 Oct 12 16:19 runtime_log
[2025-10-12 16:19:57] -rw------- 1 boinc boinc    983040 Oct 12 16:19 result.tar.gz
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc      8782 Oct 12 16:19 runtime_log.err
[2025-10-12 16:19:57] -rw------- 1 boinc boinc       659 Oct 12 16:19 NjVNDmNe6R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLVTMDmBgkoGn.diag
[2025-10-12 16:19:57] -rw-r--r-- 1 boinc boinc     10922 Oct 12 16:19 stderr.txt
[2025-10-12 16:19:57] HITS file was successfully produced:
[2025-10-12 16:19:57] -rw------- 1 boinc boinc 192874540 Oct 12 16:18 shared/HITS.pool.root.1
[2025-10-12 16:19:57]  *** Contents of shared directory: ***
[2025-10-12 16:19:57] total 404112
[2025-10-12 16:19:57] -rw-r--r-- 2 boinc boinc 219350151 Oct 12 14:58 ATLAS.root_0
[2025-10-12 16:19:57] -rw-r--r-- 2 boinc boinc    569682 Oct 12 14:58 input.tar.gz
[2025-10-12 16:19:57] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:58 start_atlas.sh
[2025-10-12 16:19:57] -rw------- 1 boinc boinc 192874540 Oct 12 16:18 HITS.pool.root.1
[2025-10-12 16:19:57] -rw------- 1 boinc boinc    983040 Oct 12 16:19 result.tar.gz
16:19:58 (2255692): run_atlas exited; CPU time 13863.551883
16:19:58 (2255692): called boinc_finish(0)

</stderr_txt>
]]>

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