Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
04:08:00 (2849586): wrapper (7.7.26015): starting
04:08:00 (2849586): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 04:08:00] Arguments: --nthreads 12
[2025-10-13 04:08:00] Threads: 12
[2025-10-13 04:08:00] Checking for CVMFS
[2025-10-13 04:08:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:08:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:08:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:08:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:08:01] 2.12.7.0 2633540 794 54564 151643 2 57 3351585 4096000 0 130560 0 586094 99.989 29257 44 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 04:08:01] CVMFS is ok
[2025-10-13 04:08:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:08:01] Checking for apptainer binary...
[2025-10-13 04:08:01] apptainer is not installed, using version from CVMFS
[2025-10-13 04:08:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:08:01] lithium
[2025-10-13 04:08:01] apptainer works
[2025-10-13 04:08:01] Set ATHENA_PROC_NUMBER=12
[2025-10-13 04:08:01] Set ATHENA_CORE_NUMBER=12
[2025-10-13 04:08:01] Starting ATLAS job with PandaID=6839661082
[2025-10-13 04:08:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:43:28]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:43:28] 2025-10-13 03:42:27,047 | INFO     | adding to output.list: log.46676269._074220.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/02/log.46676269._074220.job.log.tg
[2025-10-13 05:43:28] 2025-10-13 03:42:27,048 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:43:28] 2025-10-13 03:42:27,048 | INFO     | summary of transferred files:
[2025-10-13 05:43:28] 2025-10-13 03:42:27,048 | INFO     |  -- lfn=log.46676269._074220.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:43:28] 2025-10-13 03:42:27,049 | INFO     | stage-out finished correctly
[2025-10-13 05:43:28] 2025-10-13 03:42:27,412 | INFO     | time since job start (5654s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:28,731 | INFO     | monitor loop #413: job 0:6839661082 is in state 'finished'
[2025-10-13 05:43:28] 2025-10-13 03:42:28,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:43:28] 2025-10-13 03:42:29,414 | INFO     | time since job start (5656s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:29,874 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:43:28] 2025-10-13 03:42:29,944 | INFO     | job 6839661082 has state=finished
[2025-10-13 05:43:28] 2025-10-13 03:42:29,944 | INFO     | preparing for final server update for job 6839661082 in state='finished'
[2025-10-13 05:43:28] 2025-10-13 03:42:29,944 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:43:28] 2025-10-13 03:42:29,945 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:43:28] 2025-10-13 03:42:29,945 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:43:28] 2025-10-13 03:42:29,945 | INFO     | job 6839661082 has finished - writing final server update
[2025-10-13 05:43:28] 2025-10-13 03:42:29,945 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:43:28] 2025-10-13 03:42:29,948 | INFO     | executing command: lscpu
[2025-10-13 05:43:28] 2025-10-13 03:42:29,989 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:43:28] 2025-10-13 03:42:31,234 | INFO     | monitor loop #414: job 0:6839661082 is in state 'finished'
[2025-10-13 05:43:28] 2025-10-13 03:42:31,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:43:28] 2025-10-13 03:42:31,418 | INFO     | time since job start (5658s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:32,530 | INFO     | PID=2853431 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:43:28] 2025-10-13 03:42:33,531 | INFO     | time since job start (5660s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:33,737 | INFO     | monitor loop #415: job 0:6839661082 is in state 'finished'
[2025-10-13 05:43:28] 2025-10-13 03:42:33,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:43:28] 2025-10-13 03:42:35,537 | INFO     | time since job start (5662s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:36,241 | INFO     | monitor loop #416: job 0:6839661082 is in state 'finished'
[2025-10-13 05:43:28] 2025-10-13 03:42:36,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:43:28] 2025-10-13 03:42:37,542 | INFO     | time since job start (5664s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:38,746 | INFO     | monitor loop #417: job 0:6839661082 is in state 'finished'
[2025-10-13 05:43:28] 2025-10-13 03:42:38,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:43:28] 2025-10-13 03:42:39,548 | INFO     | time since job start (5666s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:41,249 | INFO     | monitor loop #418: job 0:6839661082 is in state 'finished'
[2025-10-13 05:43:28] 2025-10-13 03:42:41,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:43:28] 2025-10-13 03:42:41,550 | INFO     | time since job start (5668s) is within the limit (172800.0s)
[2025-10-13 05:43:28] 2025-10-13 03:42:41,888 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 05:43:28] 2025-10-13 03:42:41,890 | INFO     | found 8 cores (4 cores per socket, 2 sockets) HT, CPU MHz: 2527.505
[2025-10-13 05:43:28] 2025-10-13 03:42:41,892 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839661082/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:43:28] 2025-10-13 03:42:41,892 | INFO     | extracted standard info from prmon json
[2025-10-13 05:43:28] 2025-10-13 03:42:41,892 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:43:28] 2025-10-13 03:42:41,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:43:28] 2025-10-13 03:42:41,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:43:28] 2025-10-13 03:42:41,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:43:28] 2025-10-13 03:42:41,895 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:43:28] 2025-10-13 03:42:41,895 | INFO     | sum of square deviations: 197203697.5
[2025-10-13 05:43:28] 2025-10-13 03:42:41,896 | INFO     | sum of deviations: 1786650716.0
[2025-10-13 05:43:28] 2025-10-13 03:42:41,896 | INFO     | mean x: 1760324212.5
[2025-10-13 05:43:28] 2025-10-13 03:42:41,896 | INFO     | mean y: 2712281.7441860465
[2025-10-13 05:43:28] 2025-10-13 03:42:41,896 | INFO     | -- intersect: -15945693121.02602
[2025-10-13 05:43:28] 2025-10-13 03:42:41,896 | INFO     | intersect: -15945693121.02602
[2025-10-13 05:43:28] 2025-10-13 03:42:41,896 | INFO     | chi2: 0.0045261772244520595
[2025-10-13 05:43:28] 2025-10-13 03:42:41,896 | INFO     | -- intersect: -15945693121.02602
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | current memory leak: 9.06 B/s (using 86 data points, chi2=0.00)
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | could have reported an average CPU frequency of 2563 MHz (7 samples)
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | ..............................
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | . Timing measurements:
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | . get job = 0 s
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | . initial setup = 4 s
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | . payload setup = 4 s
[2025-10-13 05:43:28] 2025-10-13 03:42:41,897 | INFO     | . stage-in = 0 s
[2025-10-13 05:43:28] 2025-10-13 03:42:41,898 | INFO     | . payload execution = 5631 s
[2025-10-13 05:43:28] 2025-10-13 03:42:41,898 | INFO     | . stage-out = 0 s
[2025-10-13 05:43:28] 2025-10-13 03:42:41,898 | INFO     | . log creation = 0 s
[2025-10-13 05:43:28] 2025-10-13 03:42:41,898 | INFO     | ..............................
[2025-10-13 05:43:28] 2025-10-13 03:42:42,192 | INFO     | 
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | job summary report
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | --------------------------------------------------
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | PanDA job id: 6839661082
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | task id: 46676269
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | errors: (none)
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | pilot state: finished 
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | transexitcode: 0
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | exeerrorcode: 0
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | exeerrordiag: 
[2025-10-13 05:43:28] 2025-10-13 03:42:42,193 | INFO     | exitcode: 0
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | exitmsg: OK
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | cpuconsumptiontime: 62998 s
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | nevents: 400
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | neventsw: 0
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | pid: 2860007
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | pgrp: 2860007
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | corecount: 12
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | event service: False
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | sizes: {0: 2348029, 1: 2348892, 5: 2349154, 12: 2349210, 5640: 2385124, 5643: 2385124, 5655: 2385276}
[2025-10-13 05:43:28] 2025-10-13 03:42:42,194 | INFO     | --------------------------------------------------
[2025-10-13 05:43:28] 2025-10-13 03:42:42,195 | INFO     | 
[2025-10-13 05:43:28] 2025-10-13 03:42:42,195 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-13 05:43:28] 2025-10-13 03:42:42,212 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,212 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,213 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,213 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,214 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,214 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,214 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,214 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,214 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,214 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:43:28] 2025-10-13 03:42:42,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:43:28] 2025-10-13 03:42:42,216 | INFO     | job 6839661082 has completed (purged errors)
[2025-10-13 05:43:28] 2025-10-13 03:42:42,216 | INFO     | overall cleanup function is called
[2025-10-13 05:43:28] 2025-10-13 03:42:43,221 | INFO     | --- collectZombieJob: --- 10, [2860007]
[2025-10-13 05:43:28] 2025-10-13 03:42:43,221 | INFO     | zombie collector waiting for pid 2860007
[2025-10-13 05:43:28] 2025-10-13 03:42:43,222 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:43:28] 2025-10-13 03:42:43,222 | INFO     | collected zombie processes
[2025-10-13 05:43:28] 2025-10-13 03:42:43,222 | INFO     | will attempt to kill all subprocesses of pid=2860007
[2025-10-13 05:43:28] 2025-10-13 03:42:43,314 | INFO     | process IDs to be killed: [2860007] (in reverse order)
[2025-10-13 05:43:28] 2025-10-13 03:42:43,358 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:43:28] 2025-10-13 03:42:43,359 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:43:28] 2025-10-13 03:42:43,361 | INFO     | did not find any defunct processes belonging to 2860007
[2025-10-13 05:43:28] 2025-10-13 03:42:43,364 | INFO     | did not find any defunct processes belonging to 2860007
[2025-10-13 05:43:28] 2025-10-13 03:42:43,364 | INFO     | ready for new job
[2025-10-13 05:43:28] 2025-10-13 03:42:43,364 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:43:28] 2025-10-13 03:42:43,366 | INFO     | ***************************************
[2025-10-13 05:43:28] 2025-10-13 03:42:43,366 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:43:28] 2025-10-13 03:42:43,366 | INFO     | ***************************************
[2025-10-13 05:43:28] 2025-10-13 03:42:43,366 | INFO     | 
[2025-10-13 05:43:28] 2025-10-13 03:42:43,386 | INFO     | architecture information:
[2025-10-13 05:43:28] 2025-10-13 03:42:43,387 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:43:28] 2025-10-13 03:42:43,398 | INFO     | cat /etc/os-release:
[2025-10-13 05:43:28] NAME="CentOS Linux"
[2025-10-13 05:43:28] VERSION="7 (Core)"
[2025-10-13 05:43:28] ID="centos"
[2025-10-13 05:43:28] ID_LIKE="rhel fedora"
[2025-10-13 05:43:28] VERSION_ID="7"
[2025-10-13 05:43:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:43:28] ANSI_COLOR="0;31"
[2025-10-13 05:43:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:43:28] HOME_URL="https://www.centos.org/"
[2025-10-13 05:43:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:43:28] 
[2025-10-13 05:43:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:43:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:43:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:43:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:43:28] 
[2025-10-13 05:43:28] 2025-10-13 03:42:43,399 | INFO     | ***************************************
[2025-10-13 05:43:28] 2025-10-13 03:42:43,902 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-13 05:43:28] 2025-10-13 03:42:43,914 | INFO     | sufficient remaining disk space (33531363328 B)
[2025-10-13 05:43:28] 2025-10-13 03:42:43,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:43:28] 2025-10-13 03:42:43,914 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:43:28] 2025-10-13 03:42:43,914 | INFO     | update_server=False
[2025-10-13 05:43:28] 2025-10-13 03:42:43,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:43:28] 2025-10-13 03:42:43,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:43:28] 2025-10-13 03:42:44,023 | INFO     | all data control threads have been joined
[2025-10-13 05:43:28] 2025-10-13 03:42:44,289 | INFO     | all payload control threads have been joined
[2025-10-13 05:43:28] 2025-10-13 03:42:44,441 | INFO     | all job control threads have been joined
[2025-10-13 05:43:28] 2025-10-13 03:42:44,758 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:43:28] 2025-10-13 03:42:44,758 | INFO     | aborting loop
[2025-10-13 05:43:28] 2025-10-13 03:42:44,918 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:44,920 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:44,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:43:28] 2025-10-13 03:42:45,028 | INFO     | [data] control thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:45,066 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:45,085 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:45,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:43:28] 2025-10-13 03:42:45,273 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:45,294 | INFO     | [payload] control thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:45,369 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:45,445 | INFO     | [job] control thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:45,761 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:46,009 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:46,245 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:46,361 | INFO     | [job] validate thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:47,150 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:48,961 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:42:54,919 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:43:28] 2025-10-13 03:42:55,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:43:28] 2025-10-13 03:43:14,743 | INFO     | PID=2853431 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:43:28] 2025-10-13 03:43:14,744 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:43:28] 2025-10-13 03:43:14,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:43:28] 2025-10-13 03:43:14,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:43:28] 2025-10-13 03:43:21,422 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:43:28] 2025-10-13 03:43:22,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930766411584)>', '<ExcThread(monitor, started 139929900283648)>']
[2025-10-13 05:43:28] 2025-10-13 03:43:23,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:43:28] 2025-10-13 03:43:23,781 | INFO     | [monitor] control thread has ended
[2025-10-13 05:43:28] 2025-10-13 03:43:27,836 | INFO     | all workflow threads have been joined
[2025-10-13 05:43:28] 2025-10-13 03:43:27,836 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:43:28] 2025-10-13 03:43:27,837 | INFO     | traces error code: 0
[2025-10-13 05:43:28] 2025-10-13 03:43:27,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:43:28] 2025-10-13 03:43:27,922 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:43:28] 2025-10-13 03:43:27,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:43:28] 2025-10-13 03:43:27,927 [wrapper] pilotpid: 2853431
[2025-10-13 05:43:28] 2025-10-13 03:43:27,929 [wrapper] Pilot exit status: 0
[2025-10-13 05:43:28] 2025-10-13 03:43:27,937 [wrapper] pandaids: 6839661082
[2025-10-13 05:43:28] 2025-10-13 03:43:27,962 [wrapper] cleanup supervisor_pilot 2872450 2853432
[2025-10-13 05:43:28] 2025-10-13 03:43:27,964 [wrapper] Test setup, not cleaning
[2025-10-13 05:43:28] 2025-10-13 03:43:27,967 [wrapper] apfmon messages muted
[2025-10-13 05:43:28] 2025-10-13 03:43:27,969 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:43:28] 2025-10-13 03:43:27,971 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:43:28]  *** Error codes and diagnostics ***
[2025-10-13 05:43:28]     "exeErrorCode": 0,
[2025-10-13 05:43:28]     "exeErrorDiag": "",
[2025-10-13 05:43:28]     "pilotErrorCode": 0,
[2025-10-13 05:43:28]     "pilotErrorDiag": "",
[2025-10-13 05:43:28]  *** Listing of results directory ***
[2025-10-13 05:43:28] total 410644
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc    557409 Okt 12 09:58 pilot3.tar.gz
[2025-10-13 05:43:28] -rwx------ 1 boinc boinc     36292 Okt 12 10:27 runpilot2-wrapper.sh
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc      5112 Okt 12 10:27 queuedata.json
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc       100 Okt 13 04:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:43:28] -rwxr-xr-x 1 boinc boinc      7986 Okt 13 04:08 run_atlas
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc       105 Okt 13 04:08 job.xml
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc      6048 Okt 13 04:08 init_data.xml
[2025-10-13 05:43:28] -rw-r--r-- 2 boinc boinc 219749484 Okt 13 04:08 EVNT.46676267._003532.pool.root.1
[2025-10-13 05:43:28] -rw-r--r-- 2 boinc boinc     15120 Okt 13 04:08 start_atlas.sh
[2025-10-13 05:43:28] drwxrwx--x 2 boinc boinc      4096 Okt 13 04:08 shared
[2025-10-13 05:43:28] -rw-r--r-- 2 boinc boinc    569676 Okt 13 04:08 input.tar.gz
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc         0 Okt 13 04:08 boinc_lockfile
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc      2550 Okt 13 04:08 pandaJob.out
[2025-10-13 05:43:28] -rw------- 1 boinc boinc    975595 Okt 13 04:08 agis_schedconf.cvmfs.json
[2025-10-13 05:43:28] -rw------- 1 boinc boinc   1560580 Okt 13 04:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:43:28] drwx------ 5 boinc boinc      4096 Okt 13 04:08 pilot3
[2025-10-13 05:43:28] -rw------- 1 boinc boinc 194441707 Okt 13 05:41 HITS.46676269._074220.pool.root.1
[2025-10-13 05:43:28] -rw------- 1 boinc boinc      1081 Okt 13 05:42 memory_monitor_summary.json
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc       529 Okt 13 05:42 boinc_task_state.xml
[2025-10-13 05:43:28] -rw------- 1 boinc boinc    392855 Okt 13 05:42 log.46676269._074220.job.log.tgz.1
[2025-10-13 05:43:28] -rw------- 1 boinc boinc      7850 Okt 13 05:42 heartbeat.json
[2025-10-13 05:43:28] -rw------- 1 boinc boinc        95 Okt 13 05:43 pilot_heartbeat.json
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc      8192 Okt 13 05:43 boinc_mmap_file
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc        27 Okt 13 05:43 wrapper_checkpoint.txt
[2025-10-13 05:43:28] -rw------- 1 boinc boinc      4827 Okt 13 05:43 pilotlog.txt
[2025-10-13 05:43:28] -rw------- 1 boinc boinc    808440 Okt 13 05:43 log.46676269._074220.job.log.1
[2025-10-13 05:43:28] -rw------- 1 boinc boinc       357 Okt 13 05:43 output.list
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc       620 Okt 13 05:43 runtime_log
[2025-10-13 05:43:28] -rw------- 1 boinc boinc   1218560 Okt 13 05:43 result.tar.gz
[2025-10-13 05:43:28] -rw------- 1 boinc boinc       653 Okt 13 05:43 wixMDm7a6R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbUTMDmkW3CQo.diag
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc      8760 Okt 13 05:43 runtime_log.err
[2025-10-13 05:43:28] -rw-r--r-- 1 boinc boinc     22087 Okt 13 05:43 stderr.txt
[2025-10-13 05:43:28] HITS file was successfully produced:
[2025-10-13 05:43:28] -rw------- 1 boinc boinc 194441707 Okt 13 05:41 shared/HITS.pool.root.1
[2025-10-13 05:43:28]  *** Contents of shared directory: ***
[2025-10-13 05:43:28] total 406264
[2025-10-13 05:43:28] -rw-r--r-- 2 boinc boinc 219749484 Okt 13 04:08 ATLAS.root_0
[2025-10-13 05:43:28] -rw-r--r-- 2 boinc boinc     15120 Okt 13 04:08 start_atlas.sh
[2025-10-13 05:43:28] -rw-r--r-- 2 boinc boinc    569676 Okt 13 04:08 input.tar.gz
[2025-10-13 05:43:28] -rw------- 1 boinc boinc 194441707 Okt 13 05:41 HITS.pool.root.1
[2025-10-13 05:43:28] -rw------- 1 boinc boinc   1218560 Okt 13 05:43 result.tar.gz
05:43:29 (2849586): run_atlas exited; CPU time 62682.786391
05:43:29 (2849586): called boinc_finish(0)

</stderr_txt>
]]>

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