Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
23:10:04 (2768982): wrapper (7.7.26015): starting
23:10:04 (2768982): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 23:10:04] Arguments: --nthreads 12
[2025-10-12 23:10:04] Threads: 12
[2025-10-12 23:10:04] Checking for CVMFS
[2025-10-12 23:10:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:10:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:10:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:10:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:10:05] 2.12.7.0 2633540 496 53048 151636 3 57 3318881 4096001 0 130560 0 366303 99.988 19958 47 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 23:10:05] CVMFS is ok
[2025-10-12 23:10:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:10:05] Checking for apptainer binary...
[2025-10-12 23:10:05] apptainer is not installed, using version from CVMFS
[2025-10-12 23:10:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:10:05] lithium
[2025-10-12 23:10:05] apptainer works
[2025-10-12 23:10:05] Set ATHENA_PROC_NUMBER=12
[2025-10-12 23:10:05] Set ATHENA_CORE_NUMBER=12
[2025-10-12 23:10:05] Starting ATLAS job with PandaID=6839774510
[2025-10-12 23:10:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:48:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:48:39]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6839774510/log.46676269._074402.job.log.tgz.1
[2025-10-13 00:48:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/5c/log.46676269._074402.job.log.tgz.1
[2025-10-13 00:48:39]  workdir=None
[2025-10-13 00:48:39] ]
[2025-10-13 00:48:39] 2025-10-12 22:47:59,037 | INFO     | transferring file log.46676269._074402.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6839774510/log.46676269._074402.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 00:48:39] 2025-10-12 22:47:59,037 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6839774510/log.46676269._074402.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-13 00:48:39] 2025-10-12 22:47:59,050 | INFO     | adding to output.list: log.46676269._074402.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/5c/log.46676269._074402.job.log.tg
[2025-10-13 00:48:39] 2025-10-12 22:47:59,050 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 00:48:39] 2025-10-12 22:47:59,050 | INFO     | summary of transferred files:
[2025-10-13 00:48:39] 2025-10-12 22:47:59,051 | INFO     |  -- lfn=log.46676269._074402.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 00:48:39] 2025-10-12 22:47:59,051 | INFO     | stage-out finished correctly
[2025-10-13 00:48:39] 2025-10-12 22:47:59,838 | INFO     | time since job start (5866s) is within the limit (172800.0s)
[2025-10-13 00:48:39] 2025-10-12 22:48:01,035 | WARNING  | process 2779391 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 00:48:39] 2025-10-12 22:48:01,036 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839774510/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:48:39] 2025-10-12 22:48:01,111 | INFO     | number of running child processes to parent process 2779391: 1
[2025-10-13 00:48:39] 2025-10-12 22:48:01,111 | INFO     | maximum number of monitored processes: 6
[2025-10-13 00:48:39] 2025-10-12 22:48:01,842 | INFO     | time since job start (5868s) is within the limit (172800.0s)
[2025-10-13 00:48:39] 2025-10-12 22:48:02,586 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 00:48:39] 2025-10-12 22:48:02,793 | INFO     | job 6839774510 has state=finished
[2025-10-13 00:48:39] 2025-10-12 22:48:02,794 | INFO     | preparing for final server update for job 6839774510 in state='finished'
[2025-10-13 00:48:39] 2025-10-12 22:48:03,371 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 00:48:39] 2025-10-12 22:48:03,372 | INFO     | this job has now completed (state=finished)
[2025-10-13 00:48:39] 2025-10-12 22:48:03,372 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 00:48:39] 2025-10-12 22:48:03,372 | INFO     | log transfer has been attempted: DONE
[2025-10-13 00:48:39] 2025-10-12 22:48:03,372 | INFO     | job 6839774510 has finished - writing final server update
[2025-10-13 00:48:39] 2025-10-12 22:48:03,372 | INFO     | total number of processed events: 400 (read)
[2025-10-13 00:48:39] 2025-10-12 22:48:03,376 | INFO     | executing command: lscpu
[2025-10-13 00:48:39] 2025-10-12 22:48:03,417 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 00:48:39] 2025-10-12 22:48:03,613 | INFO     | monitor loop #428: job 0:6839774510 is in state 'finished'
[2025-10-13 00:48:39] 2025-10-12 22:48:03,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:48:39] 2025-10-12 22:48:03,847 | INFO     | time since job start (5870s) is within the limit (172800.0s)
[2025-10-13 00:48:39] 2025-10-12 22:48:05,850 | INFO     | time since job start (5872s) is within the limit (172800.0s)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,117 | INFO     | monitor loop #429: job 0:6839774510 is in state 'finished'
[2025-10-13 00:48:39] 2025-10-12 22:48:06,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,185 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 00:48:39] 2025-10-12 22:48:06,186 | INFO     | found 8 cores (4 cores per socket, 2 sockets) HT, CPU MHz: 2335.485
[2025-10-13 00:48:39] 2025-10-12 22:48:06,188 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839774510/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,189 | INFO     | extracted standard info from prmon json
[2025-10-13 00:48:39] 2025-10-12 22:48:06,189 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 00:48:39] 2025-10-12 22:48:06,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 00:48:39] 2025-10-12 22:48:06,190 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 00:48:39] 2025-10-12 22:48:06,190 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 00:48:39] 2025-10-12 22:48:06,192 | INFO     | fitting pss+swap vs Time
[2025-10-13 00:48:39] 2025-10-12 22:48:06,192 | INFO     | sum of square deviations: 218571540.0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,192 | INFO     | sum of deviations: -4431452726.0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,193 | INFO     | mean x: 1760306424.0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,193 | INFO     | mean y: 2749013.404494382
[2025-10-13 00:48:39] 2025-10-12 22:48:06,193 | INFO     | -- intersect: 35692275203.45701
[2025-10-13 00:48:39] 2025-10-12 22:48:06,193 | INFO     | intersect: 35692275203.45701
[2025-10-13 00:48:39] 2025-10-12 22:48:06,193 | INFO     | chi2: 0.01338667412428656
[2025-10-13 00:48:39] 2025-10-12 22:48:06,193 | INFO     | -- intersect: 35692275203.45701
[2025-10-13 00:48:39] 2025-10-12 22:48:06,193 | INFO     | current memory leak: -20.27 B/s (using 89 data points, chi2=0.01)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | could have reported an average CPU frequency of 2616 MHz (7 samples)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | ..............................
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . Timing measurements:
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . get job = 0 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . initial setup = 1 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . payload setup = 4 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . stage-in = 0 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . payload execution = 5842 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . stage-out = 0 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,194 | INFO     | . log creation = 0 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,195 | INFO     | ..............................
[2025-10-13 00:48:39] 2025-10-12 22:48:06,484 | INFO     | 
[2025-10-13 00:48:39] 2025-10-12 22:48:06,484 | INFO     | job summary report
[2025-10-13 00:48:39] 2025-10-12 22:48:06,484 | INFO     | --------------------------------------------------
[2025-10-13 00:48:39] 2025-10-12 22:48:06,484 | INFO     | PanDA job id: 6839774510
[2025-10-13 00:48:39] 2025-10-12 22:48:06,484 | INFO     | task id: 46676269
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | errors: (none)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | pilot state: finished 
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | transexitcode: 0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | exeerrorcode: 0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | exeerrordiag: 
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | exitcode: 0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | exitmsg: OK
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | cpuconsumptiontime: 65745 s
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | nevents: 400
[2025-10-13 00:48:39] 2025-10-12 22:48:06,485 | INFO     | neventsw: 0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | pid: 2779391
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | pgrp: 2779391
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | corecount: 12
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | event service: False
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | sizes: {0: 2348586, 1: 2348785, 4: 2349047, 11: 2349075, 5851: 2384900, 5855: 2384900, 5858: 2385222}
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | --------------------------------------------------
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | 
[2025-10-13 00:48:39] 2025-10-12 22:48:06,486 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-13 00:48:39] 2025-10-12 22:48:06,502 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,502 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,503 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:48:39] 2025-10-12 22:48:06,504 | INFO     | job 6839774510 has completed (purged errors)
[2025-10-13 00:48:39] 2025-10-12 22:48:06,505 | INFO     | overall cleanup function is called
[2025-10-13 00:48:39] 2025-10-12 22:48:07,509 | INFO     | --- collectZombieJob: --- 10, [2779391]
[2025-10-13 00:48:39] 2025-10-12 22:48:07,509 | INFO     | zombie collector waiting for pid 2779391
[2025-10-13 00:48:39] 2025-10-12 22:48:07,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:48:39] 2025-10-12 22:48:07,510 | INFO     | collected zombie processes
[2025-10-13 00:48:39] 2025-10-12 22:48:07,510 | INFO     | will attempt to kill all subprocesses of pid=2779391
[2025-10-13 00:48:39] 2025-10-12 22:48:07,589 | INFO     | process IDs to be killed: [2779391] (in reverse order)
[2025-10-13 00:48:39] 2025-10-12 22:48:07,629 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:48:39] 2025-10-12 22:48:07,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:48:39] 2025-10-12 22:48:07,632 | INFO     | did not find any defunct processes belonging to 2779391
[2025-10-13 00:48:39] 2025-10-12 22:48:07,635 | INFO     | did not find any defunct processes belonging to 2779391
[2025-10-13 00:48:39] 2025-10-12 22:48:07,635 | INFO     | ready for new job
[2025-10-13 00:48:39] 2025-10-12 22:48:07,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:48:39] 2025-10-12 22:48:07,636 | INFO     | ***************************************
[2025-10-13 00:48:39] 2025-10-12 22:48:07,636 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:48:39] 2025-10-12 22:48:07,636 | INFO     | ***************************************
[2025-10-13 00:48:39] 2025-10-12 22:48:07,636 | INFO     | 
[2025-10-13 00:48:39] 2025-10-12 22:48:07,654 | INFO     | architecture information:
[2025-10-13 00:48:39] 2025-10-12 22:48:07,655 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:48:39] 2025-10-12 22:48:07,665 | INFO     | cat /etc/os-release:
[2025-10-13 00:48:39] NAME="CentOS Linux"
[2025-10-13 00:48:39] VERSION="7 (Core)"
[2025-10-13 00:48:39] ID="centos"
[2025-10-13 00:48:39] ID_LIKE="rhel fedora"
[2025-10-13 00:48:39] VERSION_ID="7"
[2025-10-13 00:48:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:48:39] ANSI_COLOR="0;31"
[2025-10-13 00:48:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:48:39] HOME_URL="https://www.centos.org/"
[2025-10-13 00:48:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:48:39] 
[2025-10-13 00:48:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:48:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:48:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:48:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:48:39] 
[2025-10-13 00:48:39] 2025-10-12 22:48:07,666 | INFO     | ***************************************
[2025-10-13 00:48:39] 2025-10-12 22:48:08,169 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-13 00:48:39] 2025-10-12 22:48:08,181 | INFO     | sufficient remaining disk space (33555480576 B)
[2025-10-13 00:48:39] 2025-10-12 22:48:08,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:48:39] 2025-10-12 22:48:08,181 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:48:39] 2025-10-12 22:48:08,182 | INFO     | update_server=False
[2025-10-13 00:48:39] 2025-10-12 22:48:08,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:48:39] 2025-10-12 22:48:08,182 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:48:39] 2025-10-12 22:48:08,485 | INFO     | all data control threads have been joined
[2025-10-13 00:48:39] 2025-10-12 22:48:08,524 | INFO     | all payload control threads have been joined
[2025-10-13 00:48:39] 2025-10-12 22:48:08,621 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 00:48:39] 2025-10-12 22:48:08,621 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 00:48:39] 2025-10-12 22:48:08,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:48:39] 2025-10-12 22:48:08,621 | INFO     | will abort loop
[2025-10-13 00:48:39] 2025-10-12 22:48:08,661 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:48:39] 2025-10-12 22:48:09,186 | INFO     | all job control threads have been joined
[2025-10-13 00:48:39] 2025-10-12 22:48:09,186 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:09,187 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:09,443 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:09,489 | INFO     | [data] control thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:09,528 | INFO     | [payload] control thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:09,626 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:09,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:48:39] 2025-10-12 22:48:09,789 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:09,874 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:10,192 | INFO     | [job] control thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:10,343 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:10,408 | INFO     | [job] validate thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:10,653 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:10,686 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:11,645 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:12,667 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:18,327 | INFO     | job.realtimelogging is not enabled
[2025-10-13 00:48:39] 2025-10-12 22:48:19,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:48:39] 2025-10-12 22:48:21,994 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:48:39] 2025-10-12 22:48:23,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140703604492096)>', '<ExcThread(monitor, started 140702658852608)>']
[2025-10-13 00:48:39] 2025-10-12 22:48:28,822 | INFO     | all workflow threads have been joined
[2025-10-13 00:48:39] 2025-10-12 22:48:28,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:48:39] 2025-10-12 22:48:28,823 | INFO     | traces error code: 0
[2025-10-13 00:48:39] 2025-10-12 22:48:28,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:48:39] 2025-10-12 22:48:39,049 | INFO     | PID=2772805 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 00:48:39] 2025-10-12 22:48:39,049 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:48:39] 2025-10-12 22:48:39,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:48:39] 2025-10-12 22:48:39,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:48:39] 2025-10-12 22:48:39,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:48:39] 2025-10-12 22:48:39,049 | INFO     | [monitor] control thread has ended
[2025-10-13 00:48:39] 2025-10-12 22:48:39,134 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:48:39] 2025-10-12 22:48:39,136 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:48:39] 2025-10-12 22:48:39,138 [wrapper] pilotpid: 2772805
[2025-10-13 00:48:39] 2025-10-12 22:48:39,140 [wrapper] Pilot exit status: 0
[2025-10-13 00:48:39] 2025-10-12 22:48:39,149 [wrapper] pandaids: 6839774510
[2025-10-13 00:48:39] 2025-10-12 22:48:39,176 [wrapper] cleanup supervisor_pilot 2791211 2772806
[2025-10-13 00:48:39] 2025-10-12 22:48:39,179 [wrapper] Test setup, not cleaning
[2025-10-13 00:48:39] 2025-10-12 22:48:39,181 [wrapper] apfmon messages muted
[2025-10-13 00:48:39] 2025-10-12 22:48:39,184 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:48:39] 2025-10-12 22:48:39,186 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:48:39]  *** Error codes and diagnostics ***
[2025-10-13 00:48:39]     "exeErrorCode": 0,
[2025-10-13 00:48:39]     "exeErrorDiag": "",
[2025-10-13 00:48:39]     "pilotErrorCode": 0,
[2025-10-13 00:48:39]     "pilotErrorDiag": "",
[2025-10-13 00:48:39]  *** Listing of results directory ***
[2025-10-13 00:48:39] total 415948
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc    557409 Okt 12 09:58 pilot3.tar.gz
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc      5112 Okt 12 10:35 queuedata.json
[2025-10-13 00:48:39] -rwx------ 1 boinc boinc     36292 Okt 12 10:35 runpilot2-wrapper.sh
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc       100 Okt 12 23:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:48:39] -rwxr-xr-x 1 boinc boinc      7986 Okt 12 23:10 run_atlas
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc       105 Okt 12 23:10 job.xml
[2025-10-13 00:48:39] -rw-r--r-- 2 boinc boinc     15120 Okt 12 23:10 start_atlas.sh
[2025-10-13 00:48:39] drwxrwx--x 2 boinc boinc      4096 Okt 12 23:10 shared
[2025-10-13 00:48:39] -rw-r--r-- 2 boinc boinc    569686 Okt 12 23:10 input.tar.gz
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc      6048 Okt 12 23:10 init_data.xml
[2025-10-13 00:48:39] -rw-r--r-- 2 boinc boinc 222050344 Okt 12 23:10 EVNT.46676267._001060.pool.root.1
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc         0 Okt 12 23:10 boinc_lockfile
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc      2546 Okt 12 23:10 pandaJob.out
[2025-10-13 00:48:39] -rw------- 1 boinc boinc    975536 Okt 12 23:10 agis_schedconf.cvmfs.json
[2025-10-13 00:48:39] -rw------- 1 boinc boinc   1560580 Okt 12 23:10 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:48:39] drwx------ 5 boinc boinc      4096 Okt 12 23:10 pilot3
[2025-10-13 00:48:39] -rw------- 1 boinc boinc 197522480 Okt 13 00:47 HITS.46676269._074402.pool.root.1
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc       530 Okt 13 00:47 boinc_task_state.xml
[2025-10-13 00:48:39] -rw------- 1 boinc boinc      1068 Okt 13 00:47 memory_monitor_summary.json
[2025-10-13 00:48:39] -rw------- 1 boinc boinc    390526 Okt 13 00:47 log.46676269._074402.job.log.tgz.1
[2025-10-13 00:48:39] -rw------- 1 boinc boinc        95 Okt 13 00:48 pilot_heartbeat.json
[2025-10-13 00:48:39] -rw------- 1 boinc boinc      7841 Okt 13 00:48 heartbeat.json
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc      8192 Okt 13 00:48 boinc_mmap_file
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc        27 Okt 13 00:48 wrapper_checkpoint.txt
[2025-10-13 00:48:39] -rw------- 1 boinc boinc       747 Okt 13 00:48 pilotlog.txt
[2025-10-13 00:48:39] -rw------- 1 boinc boinc    835558 Okt 13 00:48 log.46676269._074402.job.log.1
[2025-10-13 00:48:39] -rw------- 1 boinc boinc       357 Okt 13 00:48 output.list
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc       620 Okt 13 00:48 runtime_log
[2025-10-13 00:48:39] -rw------- 1 boinc boinc   1249280 Okt 13 00:48 result.tar.gz
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc      8760 Okt 13 00:48 runtime_log.err
[2025-10-13 00:48:39] -rw------- 1 boinc boinc       653 Okt 13 00:48 MjsLDmRj6R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUAjNDmTdb5in.diag
[2025-10-13 00:48:39] -rw-r--r-- 1 boinc boinc     21990 Okt 13 00:48 stderr.txt
[2025-10-13 00:48:39] HITS file was successfully produced:
[2025-10-13 00:48:39] -rw------- 1 boinc boinc 197522480 Okt 13 00:47 shared/HITS.pool.root.1
[2025-10-13 00:48:39]  *** Contents of shared directory: ***
[2025-10-13 00:48:39] total 411548
[2025-10-13 00:48:39] -rw-r--r-- 2 boinc boinc     15120 Okt 12 23:10 start_atlas.sh
[2025-10-13 00:48:39] -rw-r--r-- 2 boinc boinc    569686 Okt 12 23:10 input.tar.gz
[2025-10-13 00:48:39] -rw-r--r-- 2 boinc boinc 222050344 Okt 12 23:10 ATLAS.root_0
[2025-10-13 00:48:39] -rw------- 1 boinc boinc 197522480 Okt 13 00:47 HITS.pool.root.1
[2025-10-13 00:48:39] -rw------- 1 boinc boinc   1249280 Okt 13 00:48 result.tar.gz
00:48:40 (2768982): run_atlas exited; CPU time 65423.091381
00:48:40 (2768982): called boinc_finish(0)

</stderr_txt>
]]>

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