Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:32:49 (3020977): wrapper (7.7.26015): starting
05:32:49 (3020977): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 05:32:49] Arguments: --nthreads 3
[2025-10-13 05:32:49] Threads: 3
[2025-10-13 05:32:49] Checking for CVMFS
[2025-10-13 05:32:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:32:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:32:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:32:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:32:49] 2.9.2.0 1460546 5262 85204 151647 2 57 4296982 36864000 0 130560 0 4129245 99.991 180223 786 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:32:49] CVMFS is ok
[2025-10-13 05:32:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:32:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:32:49] Further information can be found at the LHC@home message board.
[2025-10-13 05:32:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:32:49] Checking for apptainer binary...
[2025-10-13 05:32:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:32:49] Running /usr/bin/apptainer --version
[2025-10-13 05:32:49] apptainer version 1.4.1-1.1
[2025-10-13 05:32:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:32:49] thA371a
[2025-10-13 05:32:49] apptainer works
[2025-10-13 05:32:49] Set ATHENA_PROC_NUMBER=3
[2025-10-13 05:32:49] Set ATHENA_CORE_NUMBER=3
[2025-10-13 05:32:49] Starting ATLAS job with PandaID=6839820694
[2025-10-13 05:32:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:56:06]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:56:06] 2025-10-13 04:55:32,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | job 6839820694 has completed (purged errors)
[2025-10-13 06:56:06] 2025-10-13 04:55:32,419 | INFO     | overall cleanup function is called
[2025-10-13 06:56:06] 2025-10-13 04:55:33,426 | INFO     | --- collectZombieJob: --- 10, [3031129]
[2025-10-13 06:56:06] 2025-10-13 04:55:33,426 | INFO     | zombie collector waiting for pid 3031129
[2025-10-13 06:56:06] 2025-10-13 04:55:33,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:56:06] 2025-10-13 04:55:33,426 | INFO     | collected zombie processes
[2025-10-13 06:56:06] 2025-10-13 04:55:33,426 | INFO     | will attempt to kill all subprocesses of pid=3031129
[2025-10-13 06:56:06] 2025-10-13 04:55:33,470 | INFO     | process IDs to be killed: [3031129] (in reverse order)
[2025-10-13 06:56:06] 2025-10-13 04:55:33,494 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:56:06] 2025-10-13 04:55:33,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:56:06] 2025-10-13 04:55:33,496 | INFO     | did not find any defunct processes belonging to 3031129
[2025-10-13 06:56:06] 2025-10-13 04:55:33,497 | INFO     | did not find any defunct processes belonging to 3031129
[2025-10-13 06:56:06] 2025-10-13 04:55:33,497 | INFO     | ready for new job
[2025-10-13 06:56:06] 2025-10-13 04:55:33,497 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:56:06] 2025-10-13 04:55:33,498 | INFO     | ***************************************
[2025-10-13 06:56:06] 2025-10-13 04:55:33,498 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:56:06] 2025-10-13 04:55:33,498 | INFO     | ***************************************
[2025-10-13 06:56:06] 2025-10-13 04:55:33,498 | INFO     | 
[2025-10-13 06:56:06] 2025-10-13 04:55:33,498 | INFO     | architecture information:
[2025-10-13 06:56:06] 2025-10-13 04:55:33,498 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:56:06] 2025-10-13 04:55:33,506 | INFO     | cat /etc/os-release:
[2025-10-13 06:56:06] NAME="CentOS Linux"
[2025-10-13 06:56:06] VERSION="7 (Core)"
[2025-10-13 06:56:06] ID="centos"
[2025-10-13 06:56:06] ID_LIKE="rhel fedora"
[2025-10-13 06:56:06] VERSION_ID="7"
[2025-10-13 06:56:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:56:06] ANSI_COLOR="0;31"
[2025-10-13 06:56:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:56:06] HOME_URL="https://www.centos.org/"
[2025-10-13 06:56:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:56:06] 
[2025-10-13 06:56:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:56:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:56:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:56:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:56:06] 
[2025-10-13 06:56:06] 2025-10-13 04:55:33,506 | INFO     | ***************************************
[2025-10-13 06:56:06] 2025-10-13 04:55:34,010 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:56:06] 2025-10-13 04:55:34,022 | INFO     | sufficient remaining disk space (255285264384 B)
[2025-10-13 06:56:06] 2025-10-13 04:55:34,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:56:06] 2025-10-13 04:55:34,023 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:56:06] 2025-10-13 04:55:34,023 | INFO     | update_server=False
[2025-10-13 06:56:06] 2025-10-13 04:55:34,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:56:06] 2025-10-13 04:55:34,023 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:34,023 | INFO     | aborting loop
[2025-10-13 06:56:06] 2025-10-13 04:55:34,023 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:34,473 | INFO     | all payload control threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:55:34,612 | INFO     | all data control threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:55:34,719 | INFO     | all job control threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:55:34,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:35,028 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,029 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,029 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,053 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,479 | INFO     | [payload] control thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,618 | INFO     | [data] control thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,642 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,725 | INFO     | [job] control thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,797 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:35,874 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,417 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,431 | INFO     | [job] validate thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,502 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:36,945 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:40,524 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:44,299 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:56:06] 2025-10-13 04:55:45,304 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:56:00,313 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:56:06] 2025-10-13 04:56:00,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139916499343168)>', '<ExcThread(monitor, started 139915706742528)>']
[2025-10-13 06:56:06] 2025-10-13 04:56:04,445 | INFO     | PID=3024695 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:56:06] 2025-10-13 04:56:04,445 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:56:06] 2025-10-13 04:56:04,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:56:06] 2025-10-13 04:56:04,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:56:06] 2025-10-13 04:56:04,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:56:06] 2025-10-13 04:56:04,445 | INFO     | [monitor] control thread has ended
[2025-10-13 06:56:06] 2025-10-13 04:56:06,017 | INFO     | all workflow threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:56:06,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:56:06] 2025-10-13 04:56:06,018 | INFO     | traces error code: 0
[2025-10-13 06:56:06] 2025-10-13 04:56:06,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:56:06] 2025-10-13 04:56:06,069 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:56:06] 2025-10-13 04:56:06,072 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:56:06] 2025-10-13 04:56:06,074 [wrapper] pilotpid: 3024695
[2025-10-13 06:56:06] 2025-10-13 04:56:06,076 [wrapper] Pilot exit status: 0
[2025-10-13 06:56:06] 2025-10-13 04:56:06,083 [wrapper] pandaids: 6839820694
[2025-10-13 06:56:06] 2025-10-13 04:56:06,099 [wrapper] cleanup supervisor_pilot 3043234 3024696
[2025-10-13 06:56:06] 2025-10-13 04:56:06,101 [wrapper] Test setup, not cleaning
[2025-10-13 06:56:06] 2025-10-13 04:56:06,103 [wrapper] apfmon messages muted
[2025-10-13 06:56:06] 2025-10-13 04:56:06,106 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:56:06] 2025-10-13 04:56:06,108 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:56:06]  *** Error codes and diagnostics ***
[2025-10-13 06:56:06]     "exeErrorCode": 0,
[2025-10-13 06:56:06]     "exeErrorDiag": "",
[2025-10-13 06:56:06]     "pilotErrorCode": 0,
[2025-10-13 06:56:06]     "pilotErrorDiag": "",
[2025-10-13 06:56:06]  *** Listing of results directory ***
[2025-10-13 06:56:06] total 409472
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc    557409 Oct 12 10:37 pilot3.tar.gz
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      5112 Oct 12 10:46 queuedata.json
[2025-10-13 06:56:06] -rwx------ 1 boinc boinc     36292 Oct 12 10:48 runpilot2-wrapper.sh
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:56:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:32 run_atlas
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:32 job.xml
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc 222414204 Oct 13 05:32 EVNT.46676267._001542.pool.root.1
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc    569686 Oct 13 05:32 input.tar.gz
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:32 start_atlas.sh
[2025-10-13 06:56:06] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:32 shared
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:32 boinc_setup_complete
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      6439 Oct 13 05:32 init_data.xml
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:32 boinc_lockfile
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      2550 Oct 13 05:32 pandaJob.out
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    974373 Oct 13 05:32 agis_schedconf.cvmfs.json
[2025-10-13 06:56:06] -rw------- 1 boinc boinc   1560580 Oct 13 05:32 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:56:06] drwx------ 5 boinc boinc      4096 Oct 13 05:32 pilot3
[2025-10-13 06:56:06] -rw------- 1 boinc boinc 191018964 Oct 13 06:55 HITS.46676269._074760.pool.root.1
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       530 Oct 13 06:55 boinc_task_state.xml
[2025-10-13 06:56:06] -rw------- 1 boinc boinc        95 Oct 13 06:55 pilot_heartbeat.json
[2025-10-13 06:56:06] -rw------- 1 boinc boinc      1021 Oct 13 06:55 memory_monitor_summary.json
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    261145 Oct 13 06:55 log.46676269._074760.job.log.tgz.1
[2025-10-13 06:56:06] -rw------- 1 boinc boinc      7769 Oct 13 06:55 heartbeat.json
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:55 boinc_mmap_file
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:55 wrapper_checkpoint.txt
[2025-10-13 06:56:06] -rw------- 1 boinc boinc      4824 Oct 13 06:56 pilotlog.txt
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    727630 Oct 13 06:56 log.46676269._074760.job.log.1
[2025-10-13 06:56:06] -rw------- 1 boinc boinc       357 Oct 13 06:56 output.list
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:56 runtime_log
[2025-10-13 06:56:06] -rw------- 1 boinc boinc   1003520 Oct 13 06:56 result.tar.gz
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      8782 Oct 13 06:56 runtime_log.err
[2025-10-13 06:56:06] -rw------- 1 boinc boinc       659 Oct 13 06:56 YALLDmzv6R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4DjNDmn6J1En.diag
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc     12545 Oct 13 06:56 stderr.txt
[2025-10-13 06:56:06] HITS file was successfully produced:
[2025-10-13 06:56:06] -rw------- 1 boinc boinc 191018964 Oct 13 06:55 shared/HITS.pool.root.1
[2025-10-13 06:56:06]  *** Contents of shared directory: ***
[2025-10-13 06:56:06] total 405312
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc 222414204 Oct 13 05:32 ATLAS.root_0
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc    569686 Oct 13 05:32 input.tar.gz
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:32 start_atlas.sh
[2025-10-13 06:56:06] -rw------- 1 boinc boinc 191018964 Oct 13 06:55 HITS.pool.root.1
[2025-10-13 06:56:06] -rw------- 1 boinc boinc   1003520 Oct 13 06:56 result.tar.gz
06:56:08 (3020977): run_atlas exited; CPU time 14175.182065
06:56:08 (3020977): called boinc_finish(0)

</stderr_txt>
]]>

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