Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:37:26 (321873): wrapper (7.7.26015): starting
00:37:26 (321873): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 00:37:26] Arguments: --nthreads 4
[2025-10-13 00:37:26] Threads: 4
[2025-10-13 00:37:26] Checking for CVMFS
[2025-10-13 00:37:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:37:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:37:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:37:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:37:26] 2.9.2.0 2773518 4956 98856 151640 1 56 29091590 36864001 0 130560 0 4509731 99.992 169597 875 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 00:37:26] CVMFS is ok
[2025-10-13 00:37:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:37:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:37:26] Further information can be found at the LHC@home message board.
[2025-10-13 00:37:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:37:26] Checking for apptainer binary...
[2025-10-13 00:37:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:37:26] Running /usr/bin/apptainer --version
[2025-10-13 00:37:26] apptainer version 1.4.1-1.1
[2025-10-13 00:37:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:37:26] cosA131
[2025-10-13 00:37:26] apptainer works
[2025-10-13 00:37:26] Set ATHENA_PROC_NUMBER=4
[2025-10-13 00:37:26] Set ATHENA_CORE_NUMBER=4
[2025-10-13 00:37:26] Starting ATLAS job with PandaID=6839869958
[2025-10-13 00:37:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:49:45]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:49:45]  replicas=None
[2025-10-13 01:49:45]  scope=mc23_13p6TeV
[2025-10-13 01:49:45]  status=None
[2025-10-13 01:49:45]  status_code=0
[2025-10-13 01:49:45]  storage_token=
[2025-10-13 01:49:45]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6839869958/log.46676269._076932.job.log.tgz.1
[2025-10-13 01:49:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/7d/log.46676269._076932.job.log.tgz.1
[2025-10-13 01:49:45]  workdir=None
[2025-10-13 01:49:45] ]
[2025-10-13 01:49:45] 2025-10-12 23:48:39,117 | INFO     | transferring file log.46676269._076932.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6839869958/log.46676269._076932.job.log.tgz.1 to /local/data/boinc/
[2025-10-13 01:49:45] 2025-10-12 23:48:39,117 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6839869958/log.46676269._076932.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0769
[2025-10-13 01:49:45] 2025-10-12 23:48:39,135 | INFO     | adding to output.list: log.46676269._076932.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/7d/log.46676269._076932.job.log.tg
[2025-10-13 01:49:45] 2025-10-12 23:48:39,136 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:49:45] 2025-10-12 23:48:39,136 | INFO     | summary of transferred files:
[2025-10-13 01:49:45] 2025-10-12 23:48:39,136 | INFO     |  -- lfn=log.46676269._076932.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:49:45] 2025-10-12 23:48:39,136 | INFO     | stage-out finished correctly
[2025-10-13 01:49:45] 2025-10-12 23:48:39,611 | INFO     | time since job start (4265s) is within the limit (172800.0s)
[2025-10-13 01:49:45] 2025-10-12 23:48:41,235 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:49:45] 2025-10-12 23:48:41,618 | INFO     | time since job start (4267s) is within the limit (172800.0s)
[2025-10-13 01:49:45] 2025-10-12 23:48:42,679 | INFO     | PID=325680 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 01:49:45] 2025-10-12 23:48:42,893 | INFO     | job 6839869958 has state=finished
[2025-10-13 01:49:45] 2025-10-12 23:48:42,894 | INFO     | preparing for final server update for job 6839869958 in state='finished'
[2025-10-13 01:49:45] 2025-10-12 23:48:43,496 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 01:49:45] 2025-10-12 23:48:43,496 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:49:45] 2025-10-12 23:48:43,496 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:49:45] 2025-10-12 23:48:43,496 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:49:45] 2025-10-12 23:48:43,497 | INFO     | job 6839869958 has finished - writing final server update
[2025-10-13 01:49:45] 2025-10-12 23:48:43,497 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:49:45] 2025-10-12 23:48:43,497 | INFO     | executing command: lscpu
[2025-10-13 01:49:45] 2025-10-12 23:48:43,518 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:49:45] 2025-10-12 23:48:43,680 | INFO     | time since job start (4269s) is within the limit (172800.0s)
[2025-10-13 01:49:45] 2025-10-12 23:48:45,491 | WARNING  | process 332251 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 01:49:45] 2025-10-12 23:48:45,491 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6839869958/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:49:45] 2025-10-12 23:48:45,531 | INFO     | number of running child processes to parent process 332251: 1
[2025-10-13 01:49:45] 2025-10-12 23:48:45,531 | INFO     | maximum number of monitored processes: 6
[2025-10-13 01:49:45] 2025-10-12 23:48:45,685 | INFO     | time since job start (4271s) is within the limit (172800.0s)
[2025-10-13 01:49:45] 2025-10-12 23:48:47,038 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 01:49:45] 2025-10-12 23:48:47,039 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3572.5614374999996
[2025-10-13 01:49:45] 2025-10-12 23:48:47,041 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6839869958/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:49:45] 2025-10-12 23:48:47,041 | INFO     | extracted standard info from prmon json
[2025-10-13 01:49:45] 2025-10-12 23:48:47,041 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:49:45] 2025-10-12 23:48:47,041 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:49:45] 2025-10-12 23:48:47,041 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:49:45] 2025-10-12 23:48:47,041 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:49:45] 2025-10-12 23:48:47,042 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:49:45] 2025-10-12 23:48:47,042 | INFO     | sum of square deviations: 77515872.0
[2025-10-13 01:49:45] 2025-10-12 23:48:47,042 | INFO     | sum of deviations: -7719537800.000001
[2025-10-13 01:49:45] 2025-10-12 23:48:47,042 | INFO     | mean x: 1760310874.0
[2025-10-13 01:49:45] 2025-10-12 23:48:47,042 | INFO     | mean y: 2542278.1428571427
[2025-10-13 01:49:45] 2025-10-12 23:48:47,042 | INFO     | -- intersect: 175305818639.32523
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | intersect: 175305818639.32523
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | chi2: 0.049099218160729374
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | -- intersect: 175305818639.32523
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | current memory leak: -99.59 B/s (using 63 data points, chi2=0.05)
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | could have reported an average CPU frequency of 3687 MHz (6 samples)
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | ..............................
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . Timing measurements:
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . get job = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . initial setup = 1 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . payload setup = 4 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . stage-in = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . payload execution = 4242 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . stage-out = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | . log creation = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,043 | INFO     | ..............................
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | 
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | job summary report
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | --------------------------------------------------
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | PanDA job id: 6839869958
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | task id: 46676269
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | errors: (none)
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | pilot state: finished 
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | transexitcode: 0
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | exeerrorcode: 0
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | exeerrordiag: 
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | exitcode: 0
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | exitmsg: OK
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | cpuconsumptiontime: 15921 s
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | nevents: 400
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | neventsw: 0
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | pid: 332251
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | pgrp: 332251
[2025-10-13 01:49:45] 2025-10-12 23:48:47,084 | INFO     | corecount: 4
[2025-10-13 01:49:45] 2025-10-12 23:48:47,085 | INFO     | event service: False
[2025-10-13 01:49:45] 2025-10-12 23:48:47,085 | INFO     | sizes: {0: 2348689, 1: 2348888, 4: 2349150, 11: 2349178, 4249: 2375366, 4250: 2384370, 4252: 2384554, 4258: 2384748}
[2025-10-13 01:49:45] 2025-10-12 23:48:47,085 | INFO     | --------------------------------------------------
[2025-10-13 01:49:45] 2025-10-12 23:48:47,085 | INFO     | 
[2025-10-13 01:49:45] 2025-10-12 23:48:47,085 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 01:49:45] 2025-10-12 23:48:47,102 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | job 6839869958 has completed (purged errors)
[2025-10-13 01:49:45] 2025-10-12 23:48:47,103 | INFO     | overall cleanup function is called
[2025-10-13 01:49:45] 2025-10-12 23:48:48,105 | INFO     | --- collectZombieJob: --- 10, [332251]
[2025-10-13 01:49:45] 2025-10-12 23:48:48,105 | INFO     | zombie collector waiting for pid 332251
[2025-10-13 01:49:45] 2025-10-12 23:48:48,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:49:45] 2025-10-12 23:48:48,105 | INFO     | collected zombie processes
[2025-10-13 01:49:45] 2025-10-12 23:48:48,105 | INFO     | will attempt to kill all subprocesses of pid=332251
[2025-10-13 01:49:45] 2025-10-12 23:48:48,149 | INFO     | process IDs to be killed: [332251] (in reverse order)
[2025-10-13 01:49:45] 2025-10-12 23:48:48,182 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:49:45] 2025-10-12 23:48:48,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:49:45] 2025-10-12 23:48:48,184 | INFO     | did not find any defunct processes belonging to 332251
[2025-10-13 01:49:45] 2025-10-12 23:48:48,185 | INFO     | did not find any defunct processes belonging to 332251
[2025-10-13 01:49:45] 2025-10-12 23:48:48,186 | INFO     | ready for new job
[2025-10-13 01:49:45] 2025-10-12 23:48:48,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:49:45] 2025-10-12 23:48:48,186 | INFO     | ***************************************
[2025-10-13 01:49:45] 2025-10-12 23:48:48,186 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:49:45] 2025-10-12 23:48:48,186 | INFO     | ***************************************
[2025-10-13 01:49:45] 2025-10-12 23:48:48,186 | INFO     | 
[2025-10-13 01:49:45] 2025-10-12 23:48:48,187 | INFO     | architecture information:
[2025-10-13 01:49:45] 2025-10-12 23:48:48,187 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:49:45] 2025-10-12 23:48:48,201 | INFO     | cat /etc/os-release:
[2025-10-13 01:49:45] NAME="CentOS Linux"
[2025-10-13 01:49:45] VERSION="7 (Core)"
[2025-10-13 01:49:45] ID="centos"
[2025-10-13 01:49:45] ID_LIKE="rhel fedora"
[2025-10-13 01:49:45] VERSION_ID="7"
[2025-10-13 01:49:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:49:45] ANSI_COLOR="0;31"
[2025-10-13 01:49:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:49:45] HOME_URL="https://www.centos.org/"
[2025-10-13 01:49:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:49:45] 
[2025-10-13 01:49:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:49:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:49:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:49:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:49:45] 
[2025-10-13 01:49:45] 2025-10-12 23:48:48,201 | INFO     | ***************************************
[2025-10-13 01:49:45] 2025-10-12 23:48:48,704 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 01:49:45] 2025-10-12 23:48:48,722 | INFO     | sufficient remaining disk space (330513252352 B)
[2025-10-13 01:49:45] 2025-10-12 23:48:48,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:49:45] 2025-10-12 23:48:48,722 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:49:45] 2025-10-12 23:48:48,722 | INFO     | update_server=False
[2025-10-13 01:49:45] 2025-10-12 23:48:48,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:49:45] 2025-10-12 23:48:48,723 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:48:48,944 | INFO     | all payload control threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:48:49,040 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:48:49,040 | INFO     | aborting loop
[2025-10-13 01:49:45] 2025-10-12 23:48:49,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:48:49,708 | INFO     | all data control threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:48:49,728 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:49,729 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:49,732 | INFO     | all job control threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:48:49,782 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:49,950 | INFO     | [payload] control thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:50,046 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:50,261 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:50,276 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:50,713 | INFO     | [data] control thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:50,738 | INFO     | [job] control thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:51,001 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:51,119 | INFO     | [job] validate thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:51,165 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:51,172 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:51,700 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:51,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:48:55,796 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:48:59,665 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:49:45] 2025-10-12 23:49:00,670 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:18,804 | INFO     | PID=325680 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 01:49:45] 2025-10-12 23:49:18,804 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:49:45] 2025-10-12 23:49:18,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:49:45] 2025-10-12 23:49:18,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:49:45] 2025-10-12 23:49:39,653 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:49:45] 2025-10-12 23:49:40,417 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830919448384)>', '<ExcThread(monitor, started 139829748680448)>']
[2025-10-13 01:49:45] 2025-10-12 23:49:40,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:49:45] 2025-10-12 23:49:40,922 | INFO     | [monitor] control thread has ended
[2025-10-13 01:49:45] 2025-10-12 23:49:45,442 | INFO     | all workflow threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:49:45,443 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:49:45] 2025-10-12 23:49:45,443 | INFO     | traces error code: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:45,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:49:45] 2025-10-12 23:49:45,525 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:49:45] 2025-10-12 23:49:45,529 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:49:45] 2025-10-12 23:49:45,533 [wrapper] pilotpid: 325680
[2025-10-13 01:49:45] 2025-10-12 23:49:45,537 [wrapper] Pilot exit status: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:45,548 [wrapper] pandaids: 6839869958
[2025-10-13 01:49:45] 2025-10-12 23:49:45,571 [wrapper] cleanup supervisor_pilot  342463 325681
[2025-10-13 01:49:45] 2025-10-12 23:49:45,575 [wrapper] Test setup, not cleaning
[2025-10-13 01:49:45] 2025-10-12 23:49:45,579 [wrapper] apfmon messages muted
[2025-10-13 01:49:45] 2025-10-12 23:49:45,583 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:49:45] 2025-10-12 23:49:45,587 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:49:45]  *** Error codes and diagnostics ***
[2025-10-13 01:49:45]     "exeErrorCode": 0,
[2025-10-13 01:49:45]     "exeErrorDiag": "",
[2025-10-13 01:49:45]     "pilotErrorCode": 0,
[2025-10-13 01:49:45]     "pilotErrorDiag": "",
[2025-10-13 01:49:45]  *** Listing of results directory ***
[2025-10-13 01:49:45] total 410348
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:57 pilot3.tar.gz
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc      5112 Oct 12 13:15 queuedata.json
[2025-10-13 01:49:45] -rwx------ 1 boinc boinc     36292 Oct 12 13:15 runpilot2-wrapper.sh
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc       100 Oct 13 00:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:49:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 00:37 run_atlas
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc       105 Oct 13 00:37 job.xml
[2025-10-13 01:49:45] -rw-r--r-- 2 boinc boinc 221500028 Oct 13 00:37 EVNT.46676267._003670.pool.root.1
[2025-10-13 01:49:45] -rw-r--r-- 2 boinc boinc    569682 Oct 13 00:37 input.tar.gz
[2025-10-13 01:49:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:37 start_atlas.sh
[2025-10-13 01:49:45] drwxrwx--x 2 boinc boinc      4096 Oct 13 00:37 shared
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:37 boinc_setup_complete
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc      6379 Oct 13 00:37 init_data.xml
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:37 boinc_lockfile
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc      2550 Oct 13 00:37 pandaJob.out
[2025-10-13 01:49:45] -rw------- 1 boinc boinc    975603 Oct 13 00:37 agis_schedconf.cvmfs.json
[2025-10-13 01:49:45] -rw------- 1 boinc boinc   1560580 Oct 13 00:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:49:45] drwx------ 5 boinc boinc      4096 Oct 13 00:37 pilot3
[2025-10-13 01:49:45] -rw------- 1 boinc boinc 192989603 Oct 13 01:48 HITS.46676269._076932.pool.root.1
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc       530 Oct 13 01:48 boinc_task_state.xml
[2025-10-13 01:49:45] -rw------- 1 boinc boinc      1022 Oct 13 01:48 memory_monitor_summary.json
[2025-10-13 01:49:45] -rw------- 1 boinc boinc    266067 Oct 13 01:48 log.46676269._076932.job.log.tgz.1
[2025-10-13 01:49:45] -rw------- 1 boinc boinc      7767 Oct 13 01:48 heartbeat.json
[2025-10-13 01:49:45] -rw------- 1 boinc boinc        95 Oct 13 01:49 pilot_heartbeat.json
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:49 boinc_mmap_file
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:49 wrapper_checkpoint.txt
[2025-10-13 01:49:45] -rw------- 1 boinc boinc      4823 Oct 13 01:49 pilotlog.txt
[2025-10-13 01:49:45] -rw------- 1 boinc boinc    634741 Oct 13 01:49 log.46676269._076932.job.log.1
[2025-10-13 01:49:45] -rw------- 1 boinc boinc       357 Oct 13 01:49 output.list
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:49 runtime_log
[2025-10-13 01:49:45] -rw------- 1 boinc boinc    921600 Oct 13 01:49 result.tar.gz
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc      8782 Oct 13 01:49 runtime_log.err
[2025-10-13 01:49:45] -rw------- 1 boinc boinc       659 Oct 13 01:49 ZuxLDm5D9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGcjNDm0wwhsn.diag
[2025-10-13 01:49:45] -rw-r--r-- 1 boinc boinc     21926 Oct 13 01:49 stderr.txt
[2025-10-13 01:49:45] HITS file was successfully produced:
[2025-10-13 01:49:45] -rw------- 1 boinc boinc 192989603 Oct 13 01:48 shared/HITS.pool.root.1
[2025-10-13 01:49:45]  *** Contents of shared directory: ***
[2025-10-13 01:49:45] total 406264
[2025-10-13 01:49:45] -rw-r--r-- 2 boinc boinc 221500028 Oct 13 00:37 ATLAS.root_0
[2025-10-13 01:49:45] -rw-r--r-- 2 boinc boinc    569682 Oct 13 00:37 input.tar.gz
[2025-10-13 01:49:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:37 start_atlas.sh
[2025-10-13 01:49:45] -rw------- 1 boinc boinc 192989603 Oct 13 01:48 HITS.pool.root.1
[2025-10-13 01:49:45] -rw------- 1 boinc boinc    921600 Oct 13 01:49 result.tar.gz
01:49:47 (321873): run_atlas exited; CPU time 15932.622971
01:49:47 (321873): called boinc_finish(0)

</stderr_txt>
]]>

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