Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:41:51 (8543): wrapper (7.7.26015): starting
14:41:51 (8543): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:41:51] Arguments: --nthreads 8
[2025-10-12 14:41:51] Threads: 8
[2025-10-12 14:41:51] Checking for CVMFS
[2025-10-12 14:41:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:41:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:41:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:41:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:41:58] 2.11.2.0 7869 220434 140324 151620 1 11 13067284 25165825 4632 130560 0 119268843 99.889 62368259 2970 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 14:41:58] CVMFS is ok
[2025-10-12 14:41:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:41:58] Checking for apptainer binary...
[2025-10-12 14:41:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:41:58] Running /usr/bin/apptainer --version
[2025-10-12 14:41:58] apptainer version 1.3.2-1.el7
[2025-10-12 14:41:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:42:14] cg-vwn276.simple-grid.lan
[2025-10-12 14:42:14] apptainer works
[2025-10-12 14:42:14] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:42:14] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:42:14] Starting ATLAS job with PandaID=6839868787
[2025-10-12 14:42:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:56:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:56:32] 2025-10-12 16:55:28,443 | INFO     | sum of deviations: 98451249662.5
[2025-10-12 18:56:32] 2025-10-12 16:55:28,443 | INFO     | mean x: 1760280804.5
[2025-10-12 18:56:32] 2025-10-12 16:55:28,443 | INFO     | mean y: 2429515.122881356
[2025-10-12 18:56:32] 2025-10-12 16:55:28,443 | INFO     | -- intersect: -42517893098.989075
[2025-10-12 18:56:32] 2025-10-12 16:55:28,444 | INFO     | intersect: -42517893098.989075
[2025-10-12 18:56:32] 2025-10-12 16:55:28,444 | INFO     | chi2: 7.144805360477582
[2025-10-12 18:56:32] 2025-10-12 16:55:28,444 | INFO     | sum of square deviations: 3822136780.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,446 | INFO     | sum of deviations: 111741153650.99998
[2025-10-12 18:56:32] 2025-10-12 16:55:28,446 | INFO     | mean x: 1760280652.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,446 | INFO     | mean y: 2437344.813852814
[2025-10-12 18:56:32] 2025-10-12 16:55:28,446 | INFO     | -- intersect: -51459821105.291756
[2025-10-12 18:56:32] 2025-10-12 16:55:28,446 | INFO     | intersect: -51459821105.291756
[2025-10-12 18:56:32] 2025-10-12 16:55:28,447 | INFO     | chi2: 6.4342990732001155
[2025-10-12 18:56:32] 2025-10-12 16:55:28,447 | INFO     | current chi2=6.4342990732001155 (change=9.944375688772771 %)
[2025-10-12 18:56:32] 2025-10-12 16:55:28,447 | INFO     | right removable region: 230
[2025-10-12 18:56:32] 2025-10-12 16:55:28,447 | INFO     | sum of square deviations: 3822136780.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,449 | INFO     | sum of deviations: 17330021676.000015
[2025-10-12 18:56:32] 2025-10-12 16:55:28,449 | INFO     | mean x: 1760280957.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,449 | INFO     | mean y: 2478255.225108225
[2025-10-12 18:56:32] 2025-10-12 16:55:28,449 | INFO     | -- intersect: -7978844469.876334
[2025-10-12 18:56:32] 2025-10-12 16:55:28,450 | INFO     | intersect: -7978844469.876334
[2025-10-12 18:56:32] 2025-10-12 16:55:28,450 | INFO     | chi2: 2.336477629333815
[2025-10-12 18:56:32] 2025-10-12 16:55:28,450 | INFO     | current chi2=2.336477629333815 (change=67.29823261164894 %)
[2025-10-12 18:56:32] 2025-10-12 16:55:28,450 | INFO     | sum of square deviations: 3579276412.5
[2025-10-12 18:56:32] 2025-10-12 16:55:28,452 | INFO     | sum of deviations: -23861183248.5
[2025-10-12 18:56:32] 2025-10-12 16:55:28,452 | INFO     | mean x: 1760281109.5
[2025-10-12 18:56:32] 2025-10-12 16:55:28,452 | INFO     | mean y: 2503965.5442477874
[2025-10-12 18:56:32] 2025-10-12 16:55:28,452 | INFO     | -- intersect: 11737387020.668562
[2025-10-12 18:56:32] 2025-10-12 16:55:28,452 | INFO     | intersect: 11737387020.668562
[2025-10-12 18:56:32] 2025-10-12 16:55:28,453 | INFO     | chi2: 0.8862749467310754
[2025-10-12 18:56:32] 2025-10-12 16:55:28,453 | INFO     | current chi2=0.8862749467310754 (change=62.06790359966882 %)
[2025-10-12 18:56:32] 2025-10-12 16:55:28,453 | INFO     | sum of square deviations: 3346927870.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,455 | INFO     | sum of deviations: -21932641683.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,455 | INFO     | mean x: 1760281262.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,455 | INFO     | mean y: 2502651.3393665156
[2025-10-12 18:56:32] 2025-10-12 16:55:28,455 | INFO     | -- intersect: 11537743230.260191
[2025-10-12 18:56:32] 2025-10-12 16:55:28,456 | INFO     | intersect: 11537743230.260191
[2025-10-12 18:56:32] 2025-10-12 16:55:28,456 | INFO     | chi2: 0.8593562364020194
[2025-10-12 18:56:32] 2025-10-12 16:55:28,456 | INFO     | current chi2=0.8593562364020194 (change=3.037286614988117 %)
[2025-10-12 18:56:32] 2025-10-12 16:55:28,456 | INFO     | left removable region: 30
[2025-10-12 18:56:32] 2025-10-12 16:55:28,457 | INFO     | sum of square deviations: 2480604650.0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,458 | INFO     | sum of deviations: 3680038713.5000005
[2025-10-12 18:56:32] 2025-10-12 16:55:28,458 | INFO     | mean x: 1760281536.5
[2025-10-12 18:56:32] 2025-10-12 16:55:28,458 | INFO     | mean y: 2504904.825
[2025-10-12 18:56:32] 2025-10-12 16:55:28,458 | INFO     | -- intersect: -2608916548.802955
[2025-10-12 18:56:32] 2025-10-12 16:55:28,458 | INFO     | intersect: -2608916548.802955
[2025-10-12 18:56:32] 2025-10-12 16:55:28,459 | INFO     | chi2: 0.0002760950247531948
[2025-10-12 18:56:32] 2025-10-12 16:55:28,459 | INFO     | -- intersect: -2608916548.802955
[2025-10-12 18:56:32] 2025-10-12 16:55:28,459 | INFO     | current memory leak: 1.48 B/s (using 200 data points, chi2=0.00)
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | ..............................
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | . Timing measurements:
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | . get job = 0 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | . initial setup = 10 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | . payload setup = 120 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | . stage-in = 0 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,460 | INFO     | . payload execution = 14544 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,461 | INFO     | . stage-out = 5 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,461 | INFO     | . log creation = 1 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,461 | INFO     | ..............................
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | 
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | job summary report
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | --------------------------------------------------
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | PanDA job id: 6839868787
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | task id: 46676269
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | errors: (none)
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:56:32] 2025-10-12 16:55:28,570 | INFO     | pilot state: finished 
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | transexitcode: 0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | exeerrorcode: 0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | exeerrordiag: 
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | exitcode: 0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | exitmsg: OK
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | cpuconsumptiontime: 53853 s
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | nevents: 400
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | neventsw: 0
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | pid: 19195
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | pgrp: 19195
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | corecount: 8
[2025-10-12 18:56:32] 2025-10-12 16:55:28,571 | INFO     | event service: False
[2025-10-12 18:56:32] 2025-10-12 16:55:28,572 | INFO     | sizes: {0: 2348029, 1: 2348885, 12: 2348885, 23: 2348913, 34: 2348941, 44: 2348969, 55: 2349125, 66: 2349153, 76: 2349181, 87: 2349237, 95: 2349527, 98: 2349835, 1
[2025-10-12 18:56:32] 2025-10-12 16:55:28,572 | INFO     | --------------------------------------------------
[2025-10-12 18:56:32] 2025-10-12 16:55:28,572 | INFO     | 
[2025-10-12 18:56:32] 2025-10-12 16:55:28,572 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-12 18:56:32] 2025-10-12 16:55:29,056 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,056 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,057 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:56:32] 2025-10-12 16:55:29,058 | INFO     | job 6839868787 has completed (purged errors)
[2025-10-12 18:56:32] 2025-10-12 16:55:29,059 | INFO     | overall cleanup function is called
[2025-10-12 18:56:32] 2025-10-12 16:55:29,288 | INFO     | PID=12663 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 18:56:32] 2025-10-12 16:55:29,288 | INFO     | .. there are 9 such processes running
[2025-10-12 18:56:32] 2025-10-12 16:55:30,068 | INFO     | --- collectZombieJob: --- 10, [19195]
[2025-10-12 18:56:32] 2025-10-12 16:55:30,068 | INFO     | zombie collector waiting for pid 19195
[2025-10-12 18:56:32] 2025-10-12 16:55:30,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:56:32] 2025-10-12 16:55:30,068 | INFO     | collected zombie processes
[2025-10-12 18:56:32] 2025-10-12 16:55:30,068 | INFO     | will attempt to kill all subprocesses of pid=19195
[2025-10-12 18:56:32] 2025-10-12 16:55:30,200 | INFO     | process IDs to be killed: [19195] (in reverse order)
[2025-10-12 18:56:32] 2025-10-12 16:55:30,908 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:56:32] 2025-10-12 16:55:30,909 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:56:32] 2025-10-12 16:55:30,912 | INFO     | did not find any defunct processes belonging to 19195
[2025-10-12 18:56:32] 2025-10-12 16:55:30,916 | INFO     | did not find any defunct processes belonging to 19195
[2025-10-12 18:56:32] 2025-10-12 16:55:30,916 | INFO     | ready for new job
[2025-10-12 18:56:32] 2025-10-12 16:55:30,916 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:56:32] 2025-10-12 16:55:30,918 | INFO     | ***************************************
[2025-10-12 18:56:32] 2025-10-12 16:55:30,926 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:56:32] 2025-10-12 16:55:30,927 | INFO     | ***************************************
[2025-10-12 18:56:32] 2025-10-12 16:55:30,927 | INFO     | 
[2025-10-12 18:56:32] 2025-10-12 16:55:30,928 | INFO     | pilot is running in a VM
[2025-10-12 18:56:32] 2025-10-12 16:55:30,928 | INFO     | architecture information:
[2025-10-12 18:56:32] 2025-10-12 16:55:30,937 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:56:32] 2025-10-12 16:55:31,233 | INFO     | cat /etc/os-release:
[2025-10-12 18:56:32] NAME="CentOS Linux"
[2025-10-12 18:56:32] VERSION="7 (Core)"
[2025-10-12 18:56:32] ID="centos"
[2025-10-12 18:56:32] ID_LIKE="rhel fedora"
[2025-10-12 18:56:32] VERSION_ID="7"
[2025-10-12 18:56:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:56:32] ANSI_COLOR="0;31"
[2025-10-12 18:56:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:56:32] HOME_URL="https://www.centos.org/"
[2025-10-12 18:56:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:56:32] 
[2025-10-12 18:56:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:56:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:56:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:56:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:56:32] 
[2025-10-12 18:56:32] 2025-10-12 16:55:31,234 | INFO     | ***************************************
[2025-10-12 18:56:32] 2025-10-12 16:55:31,737 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-12 18:56:32] 2025-10-12 16:55:31,962 | INFO     | sufficient remaining disk space (495582183424 B)
[2025-10-12 18:56:32] 2025-10-12 16:55:31,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:56:32] 2025-10-12 16:55:31,963 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:56:32] 2025-10-12 16:55:31,963 | INFO     | update_server=False
[2025-10-12 18:56:32] 2025-10-12 16:55:31,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:56:32] 2025-10-12 16:55:31,992 | INFO     | all job control threads have been joined
[2025-10-12 18:56:32] 2025-10-12 16:55:32,113 | INFO     | all payload control threads have been joined
[2025-10-12 18:56:32] 2025-10-12 16:55:32,184 | INFO     | all data control threads have been joined
[2025-10-12 18:56:32] 2025-10-12 16:55:32,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:56:32] 2025-10-12 16:55:32,353 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 18:56:32] 2025-10-12 16:55:32,353 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 18:56:32] 2025-10-12 16:55:32,353 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:56:32] 2025-10-12 16:55:32,353 | INFO     | will abort loop
[2025-10-12 18:56:32] 2025-10-12 16:55:32,969 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:32,998 | INFO     | [job] control thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,082 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,082 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,119 | INFO     | [payload] control thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,167 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,191 | INFO     | [data] control thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,271 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:56:32] 2025-10-12 16:55:33,359 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,559 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,592 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:56:32] 2025-10-12 16:55:33,755 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:33,899 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:34,256 | INFO     | [job] validate thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:34,318 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:34,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:34,598 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:55:37,280 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:56:32] 2025-10-12 16:56:01,487 | INFO     | PID=12663 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 18:56:32] 2025-10-12 16:56:01,487 | INFO     | .. there are 9 such processes running
[2025-10-12 18:56:32] 2025-10-12 16:56:01,489 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:56:32] 2025-10-12 16:56:01,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:56:32] 2025-10-12 16:56:01,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:56:32] 2025-10-12 16:56:21,968 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:56:32] 2025-10-12 16:56:22,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140479917365056)>', '<ExcThread(monitor, started 140479177942784)>']
[2025-10-12 18:56:32] 2025-10-12 16:56:22,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:56:32] 2025-10-12 16:56:22,616 | INFO     | [monitor] control thread has ended
[2025-10-12 18:56:32] 2025-10-12 16:56:27,093 | INFO     | all workflow threads have been joined
[2025-10-12 18:56:32] 2025-10-12 16:56:27,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:56:32] 2025-10-12 16:56:27,093 | INFO     | traces error code: 0
[2025-10-12 18:56:32] 2025-10-12 16:56:27,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:56:32] 2025-10-12 16:56:27,421 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:56:32] 2025-10-12 16:56:27,563 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:56:32] 2025-10-12 16:56:27,650 [wrapper] pilotpid: 12663
[2025-10-12 18:56:32] 2025-10-12 16:56:27,751 [wrapper] Pilot exit status: 0
[2025-10-12 18:56:32] 2025-10-12 16:56:28,185 [wrapper] pandaids: 6839868787
[2025-10-12 18:56:32] 2025-10-12 16:56:29,234 [wrapper] cleanup supervisor_pilot 28450 12664
[2025-10-12 18:56:32] 2025-10-12 16:56:29,327 [wrapper] Test setup, not cleaning
[2025-10-12 18:56:32] 2025-10-12 16:56:29,407 [wrapper] apfmon messages muted
[2025-10-12 18:56:32] 2025-10-12 16:56:29,481 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:56:32] 2025-10-12 16:56:29,544 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:56:32]  *** Error codes and diagnostics ***
[2025-10-12 18:56:32]     "exeErrorCode": 0,
[2025-10-12 18:56:32]     "exeErrorDiag": "",
[2025-10-12 18:56:32]     "pilotErrorCode": 0,
[2025-10-12 18:56:32]     "pilotErrorDiag": "",
[2025-10-12 18:56:32]  *** Listing of results directory ***
[2025-10-12 18:56:32] total 416756
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc    557409 Oct 12 12:57 pilot3.tar.gz
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc      5112 Oct 12 13:05 queuedata.json
[2025-10-12 18:56:32] -rwx------. 1 boinc boinc     36292 Oct 12 13:06 runpilot2-wrapper.sh
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc       100 Oct 12 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:56:32] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 14:41 run_atlas
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc       105 Oct 12 14:41 job.xml
[2025-10-12 18:56:32] -rw-r--r--. 2 boinc boinc 220537209 Oct 12 14:41 EVNT.46676267._003660.pool.root.1
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc      6388 Oct 12 14:41 init_data.xml
[2025-10-12 18:56:32] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:41 start_atlas.sh
[2025-10-12 18:56:32] drwxrwx--x. 2 boinc boinc        68 Oct 12 14:41 shared
[2025-10-12 18:56:32] -rw-r--r--. 2 boinc boinc    569683 Oct 12 14:41 input.tar.gz
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc         0 Oct 12 14:41 boinc_lockfile
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc      2550 Oct 12 14:42 pandaJob.out
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc    975512 Oct 12 14:45 agis_schedconf.cvmfs.json
[2025-10-12 18:56:32] drwx------. 5 boinc boinc      4096 Oct 12 14:45 pilot3
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc 197366655 Oct 12 18:52 HITS.46676269._076736.pool.root.1
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc       531 Oct 12 18:52 boinc_task_state.xml
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc      1014 Oct 12 18:53 memory_monitor_summary.json
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc   1560580 Oct 12 18:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc    474075 Oct 12 18:53 log.46676269._076736.job.log.tgz.1
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc      7780 Oct 12 18:55 heartbeat.json
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc        95 Oct 12 18:56 pilot_heartbeat.json
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc        28 Oct 12 18:56 wrapper_checkpoint.txt
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc      8192 Oct 12 18:56 boinc_mmap_file
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc      5070 Oct 12 18:56 pilotlog.txt
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc   2008835 Oct 12 18:56 log.46676269._076736.job.log.1
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc       357 Oct 12 18:56 output.list
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc       620 Oct 12 18:56 runtime_log
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc   2498560 Oct 12 18:56 result.tar.gz
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc       657 Oct 12 18:56 utXKDm748R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6YjNDmD5ib7m.diag
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc      8703 Oct 12 18:56 runtime_log.err
[2025-10-12 18:56:32] -rw-r--r--. 1 boinc boinc     20771 Oct 12 18:56 stderr.txt
[2025-10-12 18:56:32] HITS file was successfully produced:
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc 197366655 Oct 12 18:52 shared/HITS.pool.root.1
[2025-10-12 18:56:32]  *** Contents of shared directory: ***
[2025-10-12 18:56:32] total 411132
[2025-10-12 18:56:32] -rw-r--r--. 2 boinc boinc 220537209 Oct 12 14:41 ATLAS.root_0
[2025-10-12 18:56:32] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:41 start_atlas.sh
[2025-10-12 18:56:32] -rw-r--r--. 2 boinc boinc    569683 Oct 12 14:41 input.tar.gz
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc 197366655 Oct 12 18:52 HITS.pool.root.1
[2025-10-12 18:56:32] -rw-------. 1 boinc boinc   2498560 Oct 12 18:56 result.tar.gz
18:56:33 (8543): run_atlas exited; CPU time 54057.564410
18:56:33 (8543): called boinc_finish(0)

</stderr_txt>
]]>

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