Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:21:14 (1697): wrapper (7.7.26015): starting
02:21:14 (1697): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 02:21:14] Arguments: --nthreads 8
[2025-10-13 02:21:14] Threads: 8
[2025-10-13 02:21:14] Checking for CVMFS
[2025-10-13 02:21:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:21:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:21:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:21:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:21:17] 2.11.2.0 7198 221139 140560 151642 0 60 12979928 25165825 4632 130560 0 106069918 99.883 65618342 3373 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 02:21:17] CVMFS is ok
[2025-10-13 02:21:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:21:17] Checking for apptainer binary...
[2025-10-13 02:21:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:21:17] Running /usr/bin/apptainer --version
[2025-10-13 02:21:17] apptainer version 1.3.2-1.el7
[2025-10-13 02:21:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:21:38] cg-vwn468.simple-grid.lan
[2025-10-13 02:21:38] apptainer works
[2025-10-13 02:21:38] Set ATHENA_PROC_NUMBER=8
[2025-10-13 02:21:38] Set ATHENA_CORE_NUMBER=8
[2025-10-13 02:21:38] Starting ATLAS job with PandaID=6839317620
[2025-10-13 02:21:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:20:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:20:41] 2025-10-13 04:19:50,303 | INFO     | sum of square deviations: 3438620752.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,304 | INFO     | sum of deviations: 47322051678.99999
[2025-10-13 06:20:41] 2025-10-13 04:19:50,305 | INFO     | mean x: 1760322371.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,305 | INFO     | mean y: 2455734.125560538
[2025-10-13 06:20:41] 2025-10-13 04:19:50,305 | INFO     | -- intersect: -24222974233.31442
[2025-10-13 06:20:41] 2025-10-13 04:19:50,305 | INFO     | intersect: -24222974233.31442
[2025-10-13 06:20:41] 2025-10-13 04:19:50,305 | INFO     | chi2: 6.433715864442607
[2025-10-13 06:20:41] 2025-10-13 04:19:50,306 | INFO     | sum of square deviations: 3212467674.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,308 | INFO     | sum of deviations: 61135975740.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,308 | INFO     | mean x: 1760322218.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,308 | INFO     | mean y: 2464867.0871559633
[2025-10-13 06:20:41] 2025-10-13 04:19:50,308 | INFO     | -- intersect: -33497955168.24576
[2025-10-13 06:20:41] 2025-10-13 04:19:50,308 | INFO     | intersect: -33497955168.24576
[2025-10-13 06:20:41] 2025-10-13 04:19:50,309 | INFO     | chi2: 5.710909631990934
[2025-10-13 06:20:41] 2025-10-13 04:19:50,309 | INFO     | current chi2=5.710909631990934 (change=11.234662016182986 %)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,309 | INFO     | right removable region: 217
[2025-10-13 06:20:41] 2025-10-13 04:19:50,309 | INFO     | sum of square deviations: 3212467674.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,311 | INFO     | sum of deviations: -27962958973.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,311 | INFO     | mean x: 1760322523.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,311 | INFO     | mean y: 2506443.472477064
[2025-10-13 06:20:41] 2025-10-13 04:19:50,312 | INFO     | -- intersect: 15325252535.35957
[2025-10-13 06:20:41] 2025-10-13 04:19:50,312 | INFO     | intersect: 15325252535.35957
[2025-10-13 06:20:41] 2025-10-13 04:19:50,312 | INFO     | chi2: 1.8861091216488175
[2025-10-13 06:20:41] 2025-10-13 04:19:50,312 | INFO     | current chi2=1.8861091216488175 (change=70.68398478594884 %)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,313 | INFO     | sum of square deviations: 2996454322.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,314 | INFO     | sum of deviations: -55437183812.00001
[2025-10-13 06:20:41] 2025-10-13 04:19:50,314 | INFO     | mean x: 1760322676.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,315 | INFO     | mean y: 2525673.704225352
[2025-10-13 06:20:41] 2025-10-13 04:19:50,315 | INFO     | -- intersect: 32570127669.622032
[2025-10-13 06:20:41] 2025-10-13 04:19:50,315 | INFO     | intersect: 32570127669.622032
[2025-10-13 06:20:41] 2025-10-13 04:19:50,315 | INFO     | chi2: 1.0044995456021097
[2025-10-13 06:20:41] 2025-10-13 04:19:50,315 | INFO     | current chi2=1.0044995456021097 (change=46.7422359569532 %)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,316 | INFO     | sum of square deviations: 2790348132.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,317 | INFO     | sum of deviations: -53725240985.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,317 | INFO     | mean x: 1760322828.5
[2025-10-13 06:20:41] 2025-10-13 04:19:50,318 | INFO     | mean y: 2524367.735576923
[2025-10-13 06:20:41] 2025-10-13 04:19:50,318 | INFO     | -- intersect: 33895703175.375298
[2025-10-13 06:20:41] 2025-10-13 04:19:50,318 | INFO     | intersect: 33895703175.375298
[2025-10-13 06:20:41] 2025-10-13 04:19:50,318 | INFO     | chi2: 0.9899690403252142
[2025-10-13 06:20:41] 2025-10-13 04:19:50,318 | INFO     | current chi2=0.9899690403252142 (change=1.4465417471329785 %)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,318 | INFO     | left removable region: 30
[2025-10-13 06:20:41] 2025-10-13 04:19:50,319 | INFO     | sum of square deviations: 2027639878.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,320 | INFO     | sum of deviations: -18417762635.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,320 | INFO     | mean x: 1760323103.0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,320 | INFO     | mean y: 2518581.7326203207
[2025-10-13 06:20:41] 2025-10-13 04:19:50,321 | INFO     | -- intersect: 15992149395.237787
[2025-10-13 06:20:41] 2025-10-13 04:19:50,321 | INFO     | intersect: 15992149395.237787
[2025-10-13 06:20:41] 2025-10-13 04:19:50,321 | INFO     | chi2: 0.13383585305073356
[2025-10-13 06:20:41] 2025-10-13 04:19:50,321 | INFO     | -- intersect: 15992149395.237787
[2025-10-13 06:20:41] 2025-10-13 04:19:50,321 | INFO     | current memory leak: -9.08 B/s (using 187 data points, chi2=0.13)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,322 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,322 | INFO     | ..............................
[2025-10-13 06:20:41] 2025-10-13 04:19:50,322 | INFO     | . Timing measurements:
[2025-10-13 06:20:41] 2025-10-13 04:19:50,323 | INFO     | . get job = 0 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,323 | INFO     | . initial setup = 6 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,323 | INFO     | . payload setup = 135 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,324 | INFO     | . stage-in = 0 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,326 | INFO     | . payload execution = 13735 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,326 | INFO     | . stage-out = 2 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,326 | INFO     | . log creation = 0 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,326 | INFO     | ..............................
[2025-10-13 06:20:41] 2025-10-13 04:19:50,433 | INFO     | 
[2025-10-13 06:20:41] 2025-10-13 04:19:50,433 | INFO     | job summary report
[2025-10-13 06:20:41] 2025-10-13 04:19:50,433 | INFO     | --------------------------------------------------
[2025-10-13 06:20:41] 2025-10-13 04:19:50,433 | INFO     | PanDA job id: 6839317620
[2025-10-13 06:20:41] 2025-10-13 04:19:50,433 | INFO     | task id: 46676269
[2025-10-13 06:20:41] 2025-10-13 04:19:50,433 | INFO     | errors: (none)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | pilot state: finished 
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | transexitcode: 0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | exeerrorcode: 0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | exeerrordiag: 
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | exitcode: 0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | exitmsg: OK
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | cpuconsumptiontime: 51639 s
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | nevents: 400
[2025-10-13 06:20:41] 2025-10-13 04:19:50,434 | INFO     | neventsw: 0
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | pid: 12026
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | pgrp: 12026
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | corecount: 8
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | event service: False
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | sizes: {0: 2348027, 1: 2348883, 2: 2348883, 12: 2348911, 23: 2348939, 34: 2348967, 45: 2349123, 55: 2349151, 66: 2349179, 77: 2349207, 87: 2349263, 89: 2349833, 98
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | --------------------------------------------------
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | 
[2025-10-13 06:20:41] 2025-10-13 04:19:50,435 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-13 06:20:41] 2025-10-13 04:19:50,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,493 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | job 6839317620 has completed (purged errors)
[2025-10-13 06:20:41] 2025-10-13 04:19:50,495 | INFO     | overall cleanup function is called
[2025-10-13 06:20:41] 2025-10-13 04:19:50,618 | INFO     | PID=5472 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 06:20:41] 2025-10-13 04:19:50,618 | INFO     | .. there are 9 such processes running
[2025-10-13 06:20:41] 2025-10-13 04:19:51,499 | INFO     | --- collectZombieJob: --- 10, [12026]
[2025-10-13 06:20:41] 2025-10-13 04:19:51,499 | INFO     | zombie collector waiting for pid 12026
[2025-10-13 06:20:41] 2025-10-13 04:19:51,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:20:41] 2025-10-13 04:19:51,499 | INFO     | collected zombie processes
[2025-10-13 06:20:41] 2025-10-13 04:19:51,499 | INFO     | will attempt to kill all subprocesses of pid=12026
[2025-10-13 06:20:41] 2025-10-13 04:19:51,587 | INFO     | process IDs to be killed: [12026] (in reverse order)
[2025-10-13 06:20:41] 2025-10-13 04:19:51,648 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:20:41] 2025-10-13 04:19:51,648 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:20:41] 2025-10-13 04:19:51,652 | INFO     | did not find any defunct processes belonging to 12026
[2025-10-13 06:20:41] 2025-10-13 04:19:51,655 | INFO     | did not find any defunct processes belonging to 12026
[2025-10-13 06:20:41] 2025-10-13 04:19:51,655 | INFO     | ready for new job
[2025-10-13 06:20:41] 2025-10-13 04:19:51,655 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:20:41] 2025-10-13 04:19:51,657 | INFO     | ***************************************
[2025-10-13 06:20:41] 2025-10-13 04:19:51,658 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:20:41] 2025-10-13 04:19:51,658 | INFO     | ***************************************
[2025-10-13 06:20:41] 2025-10-13 04:19:51,658 | INFO     | 
[2025-10-13 06:20:41] 2025-10-13 04:19:51,658 | INFO     | pilot is running in a VM
[2025-10-13 06:20:41] 2025-10-13 04:19:51,659 | INFO     | architecture information:
[2025-10-13 06:20:41] 2025-10-13 04:19:51,659 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:20:41] 2025-10-13 04:19:51,679 | INFO     | cat /etc/os-release:
[2025-10-13 06:20:41] NAME="CentOS Linux"
[2025-10-13 06:20:41] VERSION="7 (Core)"
[2025-10-13 06:20:41] ID="centos"
[2025-10-13 06:20:41] ID_LIKE="rhel fedora"
[2025-10-13 06:20:41] VERSION_ID="7"
[2025-10-13 06:20:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:20:41] ANSI_COLOR="0;31"
[2025-10-13 06:20:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:20:41] HOME_URL="https://www.centos.org/"
[2025-10-13 06:20:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:20:41] 
[2025-10-13 06:20:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:20:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:20:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:20:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:20:41] 
[2025-10-13 06:20:41] 2025-10-13 04:19:51,680 | INFO     | ***************************************
[2025-10-13 06:20:41] 2025-10-13 04:19:52,183 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-13 06:20:41] 2025-10-13 04:19:52,207 | INFO     | sufficient remaining disk space (494760099840 B)
[2025-10-13 06:20:41] 2025-10-13 04:19:52,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:20:41] 2025-10-13 04:19:52,208 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:20:41] 2025-10-13 04:19:52,208 | INFO     | update_server=False
[2025-10-13 06:20:41] 2025-10-13 04:19:52,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:20:41] 2025-10-13 04:19:52,208 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:20:41] 2025-10-13 04:19:52,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:20:41] 2025-10-13 04:19:52,209 | INFO     | aborting loop
[2025-10-13 06:20:41] 2025-10-13 04:19:52,209 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:20:41] 2025-10-13 04:19:52,701 | INFO     | all data control threads have been joined
[2025-10-13 06:20:41] 2025-10-13 04:19:52,718 | INFO     | all payload control threads have been joined
[2025-10-13 06:20:41] 2025-10-13 04:19:52,797 | INFO     | all job control threads have been joined
[2025-10-13 06:20:41] 2025-10-13 04:19:52,987 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:20:41] 2025-10-13 04:19:53,213 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:53,214 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:53,214 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:53,655 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:53,707 | INFO     | [data] control thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:53,723 | INFO     | [payload] control thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:53,799 | INFO     | [job] control thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:53,992 | INFO     | [job] validate thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:54,135 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:54,160 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:54,213 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:54,537 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:54,651 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:54,709 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:19:56,989 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:20:03,105 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:20:41] 2025-10-13 04:20:04,107 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:20:41] 2025-10-13 04:20:22,811 | INFO     | PID=5472 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 06:20:41] 2025-10-13 04:20:22,811 | INFO     | .. there are 9 such processes running
[2025-10-13 06:20:41] 2025-10-13 04:20:22,812 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:20:41] 2025-10-13 04:20:22,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:20:41] 2025-10-13 04:20:22,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:20:41] 2025-10-13 04:20:34,202 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:20:41] 2025-10-13 04:20:36,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140477778540352)>', '<ExcThread(monitor, started 140477483435776)>']
[2025-10-13 06:20:41] 2025-10-13 04:20:36,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:20:41] 2025-10-13 04:20:36,896 | INFO     | [monitor] control thread has ended
[2025-10-13 06:20:41] 2025-10-13 04:20:41,231 | INFO     | all workflow threads have been joined
[2025-10-13 06:20:41] 2025-10-13 04:20:41,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:20:41] 2025-10-13 04:20:41,231 | INFO     | traces error code: 0
[2025-10-13 06:20:41] 2025-10-13 04:20:41,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:20:41] 2025-10-13 04:20:41,416 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:20:41] 2025-10-13 04:20:41,419 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:20:41] 2025-10-13 04:20:41,421 [wrapper] pilotpid: 5472
[2025-10-13 06:20:41] 2025-10-13 04:20:41,424 [wrapper] Pilot exit status: 0
[2025-10-13 06:20:41] 2025-10-13 04:20:41,440 [wrapper] pandaids: 6839317620
[2025-10-13 06:20:41] 2025-10-13 04:20:41,481 [wrapper] cleanup supervisor_pilot  3523 5473
[2025-10-13 06:20:41] 2025-10-13 04:20:41,509 [wrapper] Test setup, not cleaning
[2025-10-13 06:20:41] 2025-10-13 04:20:41,525 [wrapper] apfmon messages muted
[2025-10-13 06:20:41] 2025-10-13 04:20:41,528 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:20:41] 2025-10-13 04:20:41,531 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:20:41]  *** Error codes and diagnostics ***
[2025-10-13 06:20:41]     "exeErrorCode": 0,
[2025-10-13 06:20:41]     "exeErrorDiag": "",
[2025-10-13 06:20:41]     "pilotErrorCode": 0,
[2025-10-13 06:20:41]     "pilotErrorDiag": "",
[2025-10-13 06:20:41]  *** Listing of results directory ***
[2025-10-13 06:20:41] total 413776
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc      5112 Oct 12 05:00 queuedata.json
[2025-10-13 06:20:41] -rwx------. 1 boinc boinc     36292 Oct 12 05:00 runpilot2-wrapper.sh
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc       100 Oct 13 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:20:41] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 02:21 run_atlas
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc       105 Oct 13 02:21 job.xml
[2025-10-13 06:20:41] -rw-r--r--. 2 boinc boinc 222431230 Oct 13 02:21 EVNT.46676267._003196.pool.root.1
[2025-10-13 06:20:41] -rw-r--r--. 2 boinc boinc     15120 Oct 13 02:21 start_atlas.sh
[2025-10-13 06:20:41] drwxrwx--x. 2 boinc boinc        68 Oct 13 02:21 shared
[2025-10-13 06:20:41] -rw-r--r--. 2 boinc boinc    569676 Oct 13 02:21 input.tar.gz
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc      6386 Oct 13 02:21 init_data.xml
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc         0 Oct 13 02:21 boinc_lockfile
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc      2549 Oct 13 02:21 pandaJob.out
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc    975603 Oct 13 02:25 agis_schedconf.cvmfs.json
[2025-10-13 06:20:41] drwx------. 5 boinc boinc      4096 Oct 13 02:25 pilot3
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc 192752670 Oct 13 06:18 HITS.46676269._069659.pool.root.1
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc       531 Oct 13 06:19 boinc_task_state.xml
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc      1015 Oct 13 06:19 memory_monitor_summary.json
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc        95 Oct 13 06:19 pilot_heartbeat.json
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc   1560580 Oct 13 06:19 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc    439840 Oct 13 06:19 log.46676269._069659.job.log.tgz.1
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc      7773 Oct 13 06:19 heartbeat.json
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc      8192 Oct 13 06:20 boinc_mmap_file
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc        28 Oct 13 06:20 wrapper_checkpoint.txt
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc      4955 Oct 13 06:20 pilotlog.txt
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc   1878953 Oct 13 06:20 log.46676269._069659.job.log.1
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc       357 Oct 13 06:20 output.list
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc       620 Oct 13 06:20 runtime_log
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc   2334720 Oct 13 06:20 result.tar.gz
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc      8703 Oct 13 06:20 runtime_log.err
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc       656 Oct 13 06:20 8QfNDmEV1R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmo2SMDmoKIq1n.diag
[2025-10-13 06:20:41] -rw-r--r--. 1 boinc boinc     20725 Oct 13 06:20 stderr.txt
[2025-10-13 06:20:41] HITS file was successfully produced:
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc 192752670 Oct 13 06:18 shared/HITS.pool.root.1
[2025-10-13 06:20:41]  *** Contents of shared directory: ***
[2025-10-13 06:20:41] total 408312
[2025-10-13 06:20:41] -rw-r--r--. 2 boinc boinc 222431230 Oct 13 02:21 ATLAS.root_0
[2025-10-13 06:20:41] -rw-r--r--. 2 boinc boinc     15120 Oct 13 02:21 start_atlas.sh
[2025-10-13 06:20:41] -rw-r--r--. 2 boinc boinc    569676 Oct 13 02:21 input.tar.gz
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc 192752670 Oct 13 06:18 HITS.pool.root.1
[2025-10-13 06:20:41] -rw-------. 1 boinc boinc   2334720 Oct 13 06:20 result.tar.gz
06:20:42 (1697): run_atlas exited; CPU time 51816.145886
06:20:42 (1697): called boinc_finish(0)

</stderr_txt>
]]>

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