Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:38:39 (12657): wrapper (7.7.26015): starting
14:38:39 (12657): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:38:39] Arguments: --nthreads 8
[2025-10-12 14:38:39] Threads: 8
[2025-10-12 14:38:39] Checking for CVMFS
[2025-10-12 14:38:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:38:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:38:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:38:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:38:44] 2.11.2.0 3755 220615 139716 151620 1 11 23159813 25165825 4632 130560 0 120549911 99.898 60750363 3358 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 14:38:44] CVMFS is ok
[2025-10-12 14:38:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:38:44] Checking for apptainer binary...
[2025-10-12 14:38:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:38:44] Running /usr/bin/apptainer --version
[2025-10-12 14:38:44] apptainer version 1.3.2-1.el7
[2025-10-12 14:38:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:38:50] cg-vwn224.simple-grid.lan
[2025-10-12 14:38:50] apptainer works
[2025-10-12 14:38:51] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:38:51] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:38:51] Starting ATLAS job with PandaID=6839660547
[2025-10-12 14:38:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:00:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:00:11] 2025-10-12 16:59:02,622 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:00:11] 2025-10-12 16:59:02,623 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-12 19:00:11] 2025-10-12 16:59:02,625 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6839660547/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:00:11] 2025-10-12 16:59:02,626 | INFO     | extracted standard info from prmon json
[2025-10-12 19:00:11] 2025-10-12 16:59:02,626 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:00:11] 2025-10-12 16:59:02,626 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:00:11] 2025-10-12 16:59:02,627 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:00:11] 2025-10-12 16:59:02,627 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:00:11] 2025-10-12 16:59:02,634 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:00:11] 2025-10-12 16:59:02,635 | INFO     | sum of square deviations: 4449281562.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,637 | INFO     | sum of deviations: 48082686787.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,638 | INFO     | mean x: 1760280814.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,638 | INFO     | mean y: 2459974.181069959
[2025-10-12 19:00:11] 2025-10-12 16:59:02,638 | INFO     | -- intersect: -19020618214.352642
[2025-10-12 19:00:11] 2025-10-12 16:59:02,638 | INFO     | intersect: -19020618214.352642
[2025-10-12 19:00:11] 2025-10-12 16:59:02,639 | INFO     | chi2: 4.834779577842949
[2025-10-12 19:00:11] 2025-10-12 16:59:02,639 | INFO     | sum of square deviations: 4180243959.5
[2025-10-12 19:00:11] 2025-10-12 16:59:02,641 | INFO     | sum of deviations: 62934034127.49999
[2025-10-12 19:00:11] 2025-10-12 16:59:02,641 | INFO     | mean x: 1760280661.5
[2025-10-12 19:00:11] 2025-10-12 16:59:02,641 | INFO     | mean y: 2468240.1134453784
[2025-10-12 19:00:11] 2025-10-12 16:59:02,641 | INFO     | -- intersect: -26498751377.238712
[2025-10-12 19:00:11] 2025-10-12 16:59:02,641 | INFO     | intersect: -26498751377.238712
[2025-10-12 19:00:11] 2025-10-12 16:59:02,642 | INFO     | chi2: 4.096901216225748
[2025-10-12 19:00:11] 2025-10-12 16:59:02,642 | INFO     | current chi2=4.096901216225748 (change=15.261882154851145 %)
[2025-10-12 19:00:11] 2025-10-12 16:59:02,642 | INFO     | right removable region: 237
[2025-10-12 19:00:11] 2025-10-12 16:59:02,642 | INFO     | sum of square deviations: 4180243959.5
[2025-10-12 19:00:11] 2025-10-12 16:59:02,654 | INFO     | sum of deviations: -28125232637.5
[2025-10-12 19:00:11] 2025-10-12 16:59:02,654 | INFO     | mean x: 1760280966.5
[2025-10-12 19:00:11] 2025-10-12 16:59:02,654 | INFO     | mean y: 2503083.7605042015
[2025-10-12 19:00:11] 2025-10-12 16:59:02,654 | INFO     | -- intersect: 11845905566.925037
[2025-10-12 19:00:11] 2025-10-12 16:59:02,654 | INFO     | intersect: 11845905566.925037
[2025-10-12 19:00:11] 2025-10-12 16:59:02,655 | INFO     | chi2: 0.9990790765005688
[2025-10-12 19:00:11] 2025-10-12 16:59:02,655 | INFO     | current chi2=0.9990790765005688 (change=79.33558168651174 %)
[2025-10-12 19:00:11] 2025-10-12 16:59:02,655 | INFO     | sum of square deviations: 3922276332.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,657 | INFO     | sum of deviations: -36865030848.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,658 | INFO     | mean x: 1760281119.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,658 | INFO     | mean y: 2508209.0300429184
[2025-10-12 19:00:11] 2025-10-12 16:59:02,658 | INFO     | -- intersect: 16547191005.511541
[2025-10-12 19:00:11] 2025-10-12 16:59:02,658 | INFO     | intersect: 16547191005.511541
[2025-10-12 19:00:11] 2025-10-12 16:59:02,658 | INFO     | chi2: 0.9124136597424278
[2025-10-12 19:00:11] 2025-10-12 16:59:02,659 | INFO     | current chi2=0.9124136597424278 (change=8.674530254572062 %)
[2025-10-12 19:00:11] 2025-10-12 16:59:02,659 | INFO     | left removable region: 20
[2025-10-12 19:00:11] 2025-10-12 16:59:02,659 | INFO     | sum of square deviations: 3168461268.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,661 | INFO     | sum of deviations: -5857314976.999997
[2025-10-12 19:00:11] 2025-10-12 16:59:02,661 | INFO     | mean x: 1760281241.0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,661 | INFO     | mean y: 2507933.419354839
[2025-10-12 19:00:11] 2025-10-12 16:59:02,661 | INFO     | -- intersect: 3256617990.175599
[2025-10-12 19:00:11] 2025-10-12 16:59:02,662 | INFO     | intersect: 3256617990.175599
[2025-10-12 19:00:11] 2025-10-12 16:59:02,662 | INFO     | chi2: 0.06443730179609895
[2025-10-12 19:00:11] 2025-10-12 16:59:02,662 | INFO     | -- intersect: 3256617990.175599
[2025-10-12 19:00:11] 2025-10-12 16:59:02,662 | INFO     | current memory leak: -1.85 B/s (using 217 data points, chi2=0.06)
[2025-10-12 19:00:11] 2025-10-12 16:59:02,663 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-12 19:00:11] 2025-10-12 16:59:02,663 | INFO     | ..............................
[2025-10-12 19:00:11] 2025-10-12 16:59:02,663 | INFO     | . Timing measurements:
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | . get job = 0 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | . initial setup = 4 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | . payload setup = 124 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | . stage-in = 0 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | . payload execution = 14981 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | . stage-out = 3 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | . log creation = 1 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,664 | INFO     | ..............................
[2025-10-12 19:00:11] 2025-10-12 16:59:02,811 | INFO     | 
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | job summary report
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | --------------------------------------------------
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | PanDA job id: 6839660547
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | task id: 46676269
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | errors: (none)
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | pilot state: finished 
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | transexitcode: 0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | exeerrorcode: 0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,812 | INFO     | exeerrordiag: 
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | exitcode: 0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | exitmsg: OK
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | cpuconsumptiontime: 56296 s
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | nevents: 400
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | neventsw: 0
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | pid: 23330
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | pgrp: 23330
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | corecount: 8
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | event service: False
[2025-10-12 19:00:11] 2025-10-12 16:59:02,813 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 34: 2348941, 44: 2348969, 55: 2349125, 66: 2349153, 76: 2349181, 87: 2349237, 90: 2349527, 98: 2349835, 1
[2025-10-12 19:00:11] 2025-10-12 16:59:02,814 | INFO     | --------------------------------------------------
[2025-10-12 19:00:11] 2025-10-12 16:59:02,814 | INFO     | 
[2025-10-12 19:00:11] 2025-10-12 16:59:02,814 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-10-12 19:00:11] 2025-10-12 16:59:02,886 | INFO     | time since job start (15389s) is within the limit (172800.0s)
[2025-10-12 19:00:11] 2025-10-12 16:59:03,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,127 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:00:11] 2025-10-12 16:59:03,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:00:11] 2025-10-12 16:59:03,129 | INFO     | job 6839660547 has completed (purged errors)
[2025-10-12 19:00:11] 2025-10-12 16:59:03,130 | INFO     | overall cleanup function is called
[2025-10-12 19:00:11] 2025-10-12 16:59:04,138 | INFO     | --- collectZombieJob: --- 10, [23330]
[2025-10-12 19:00:11] 2025-10-12 16:59:04,139 | INFO     | zombie collector waiting for pid 23330
[2025-10-12 19:00:11] 2025-10-12 16:59:04,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:00:11] 2025-10-12 16:59:04,139 | INFO     | collected zombie processes
[2025-10-12 19:00:11] 2025-10-12 16:59:04,139 | INFO     | will attempt to kill all subprocesses of pid=23330
[2025-10-12 19:00:11] 2025-10-12 16:59:04,276 | INFO     | process IDs to be killed: [23330] (in reverse order)
[2025-10-12 19:00:11] 2025-10-12 16:59:05,135 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:00:11] 2025-10-12 16:59:05,135 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:00:11] 2025-10-12 16:59:05,139 | INFO     | did not find any defunct processes belonging to 23330
[2025-10-12 19:00:11] 2025-10-12 16:59:05,142 | INFO     | did not find any defunct processes belonging to 23330
[2025-10-12 19:00:11] 2025-10-12 16:59:05,142 | INFO     | ready for new job
[2025-10-12 19:00:11] 2025-10-12 16:59:05,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:00:11] 2025-10-12 16:59:05,145 | INFO     | ***************************************
[2025-10-12 19:00:11] 2025-10-12 16:59:05,145 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:00:11] 2025-10-12 16:59:05,145 | INFO     | ***************************************
[2025-10-12 19:00:11] 2025-10-12 16:59:05,145 | INFO     | 
[2025-10-12 19:00:11] 2025-10-12 16:59:05,146 | INFO     | pilot is running in a VM
[2025-10-12 19:00:11] 2025-10-12 16:59:05,146 | INFO     | architecture information:
[2025-10-12 19:00:11] 2025-10-12 16:59:05,157 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:00:11] 2025-10-12 16:59:05,244 | INFO     | cat /etc/os-release:
[2025-10-12 19:00:11] NAME="CentOS Linux"
[2025-10-12 19:00:11] VERSION="7 (Core)"
[2025-10-12 19:00:11] ID="centos"
[2025-10-12 19:00:11] ID_LIKE="rhel fedora"
[2025-10-12 19:00:11] VERSION_ID="7"
[2025-10-12 19:00:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:00:11] ANSI_COLOR="0;31"
[2025-10-12 19:00:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:00:11] HOME_URL="https://www.centos.org/"
[2025-10-12 19:00:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:00:11] 
[2025-10-12 19:00:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:00:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:00:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:00:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:00:11] 
[2025-10-12 19:00:11] 2025-10-12 16:59:05,244 | INFO     | ***************************************
[2025-10-12 19:00:11] 2025-10-12 16:59:05,747 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-10-12 19:00:11] 2025-10-12 16:59:05,946 | INFO     | sufficient remaining disk space (495898853376 B)
[2025-10-12 19:00:11] 2025-10-12 16:59:05,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:00:11] 2025-10-12 16:59:05,946 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:00:11] 2025-10-12 16:59:05,947 | INFO     | update_server=False
[2025-10-12 19:00:11] 2025-10-12 16:59:05,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:00:11] 2025-10-12 16:59:05,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:00:11] 2025-10-12 16:59:05,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:00:11] 2025-10-12 16:59:05,948 | INFO     | aborting loop
[2025-10-12 19:00:11] 2025-10-12 16:59:06,242 | INFO     | all payload control threads have been joined
[2025-10-12 19:00:11] 2025-10-12 16:59:06,624 | INFO     | all data control threads have been joined
[2025-10-12 19:00:11] 2025-10-12 16:59:06,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:00:11] 2025-10-12 16:59:06,952 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:06,952 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,062 | INFO     | all job control threads have been joined
[2025-10-12 19:00:11] 2025-10-12 16:59:07,248 | INFO     | [payload] control thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,310 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,593 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,631 | INFO     | [data] control thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,677 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,827 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:00:11] 2025-10-12 16:59:07,863 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,867 | INFO     | [job] validate thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:07,885 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:08,053 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:08,068 | INFO     | [job] control thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:08,304 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:08,833 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:08,895 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:09,956 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:00:11] 2025-10-12 16:59:34,921 | INFO     | 15396s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 19:00:11] 2025-10-12 16:59:36,139 | INFO     | PID=16795 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:00:11] 2025-10-12 16:59:36,139 | INFO     | .. there are 9 such processes running
[2025-10-12 19:00:11] 2025-10-12 16:59:36,141 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:00:11] 2025-10-12 16:59:36,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:00:11] 2025-10-12 16:59:36,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:00:11] 2025-10-12 16:59:59,634 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:00:11] 2025-10-12 17:00:01,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683272357696)>', '<ExcThread(monitor, started 139682973202176)>']
[2025-10-12 19:00:11] 2025-10-12 17:00:02,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:00:11] 2025-10-12 17:00:02,298 | INFO     | [monitor] control thread has ended
[2025-10-12 19:00:11] 2025-10-12 17:00:06,454 | INFO     | all workflow threads have been joined
[2025-10-12 19:00:11] 2025-10-12 17:00:06,455 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:00:11] 2025-10-12 17:00:06,455 | INFO     | traces error code: 0
[2025-10-12 19:00:11] 2025-10-12 17:00:06,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:00:11] 2025-10-12 17:00:06,767 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:00:11] 2025-10-12 17:00:06,852 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:00:11] 2025-10-12 17:00:06,939 [wrapper] pilotpid: 16795
[2025-10-12 19:00:11] 2025-10-12 17:00:07,034 [wrapper] Pilot exit status: 0
[2025-10-12 19:00:11] 2025-10-12 17:00:07,512 [wrapper] pandaids: 6839660547
[2025-10-12 19:00:11] 2025-10-12 17:00:08,217 [wrapper] cleanup supervisor_pilot   697 16796
[2025-10-12 19:00:11] 2025-10-12 17:00:08,289 [wrapper] Test setup, not cleaning
[2025-10-12 19:00:11] 2025-10-12 17:00:08,343 [wrapper] apfmon messages muted
[2025-10-12 19:00:11] 2025-10-12 17:00:08,406 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:00:11] 2025-10-12 17:00:08,490 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:00:11]  *** Error codes and diagnostics ***
[2025-10-12 19:00:11]     "exeErrorCode": 0,
[2025-10-12 19:00:11]     "exeErrorDiag": "",
[2025-10-12 19:00:11]     "pilotErrorCode": 0,
[2025-10-12 19:00:11]     "pilotErrorDiag": "",
[2025-10-12 19:00:11]  *** Listing of results directory ***
[2025-10-12 19:00:11] total 416324
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc      5112 Oct 12 09:56 queuedata.json
[2025-10-12 19:00:11] -rwx------. 1 boinc boinc     36292 Oct 12 09:57 runpilot2-wrapper.sh
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc       100 Oct 12 14:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:00:11] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 14:38 run_atlas
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc       105 Oct 12 14:38 job.xml
[2025-10-12 19:00:11] -rw-r--r--. 2 boinc boinc 221961513 Oct 12 14:38 EVNT.46676267._003523.pool.root.1
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc      6389 Oct 12 14:38 init_data.xml
[2025-10-12 19:00:11] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:38 start_atlas.sh
[2025-10-12 19:00:11] drwxrwx--x. 2 boinc boinc        68 Oct 12 14:38 shared
[2025-10-12 19:00:11] -rw-r--r--. 2 boinc boinc    569682 Oct 12 14:38 input.tar.gz
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc         0 Oct 12 14:38 boinc_lockfile
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc      2550 Oct 12 14:38 pandaJob.out
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc    975512 Oct 12 14:42 agis_schedconf.cvmfs.json
[2025-10-12 19:00:11] drwx------. 5 boinc boinc      4096 Oct 12 14:42 pilot3
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc 195389200 Oct 12 18:56 HITS.46676269._074038.pool.root.1
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc       530 Oct 12 18:56 boinc_task_state.xml
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc      1018 Oct 12 18:57 memory_monitor_summary.json
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc   1560580 Oct 12 18:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc    481694 Oct 12 18:57 log.46676269._074038.job.log.tgz.1
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc      7777 Oct 12 18:59 heartbeat.json
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc        95 Oct 12 18:59 pilot_heartbeat.json
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc      5000 Oct 12 19:00 pilotlog.txt
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc      8192 Oct 12 19:00 boinc_mmap_file
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc        28 Oct 12 19:00 wrapper_checkpoint.txt
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc   2054995 Oct 12 19:00 log.46676269._074038.job.log.1
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc       357 Oct 12 19:00 output.list
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc       620 Oct 12 19:00 runtime_log
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc   2560000 Oct 12 19:00 result.tar.gz
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc      8703 Oct 12 19:00 runtime_log.err
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc       657 Oct 12 19:00 F7dNDmk85R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmq6iNDm4rA6pn.diag
[2025-10-12 19:00:11] -rw-r--r--. 1 boinc boinc     20810 Oct 12 19:00 stderr.txt
[2025-10-12 19:00:11] HITS file was successfully produced:
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc 195389200 Oct 12 18:56 shared/HITS.pool.root.1
[2025-10-12 19:00:11]  *** Contents of shared directory: ***
[2025-10-12 19:00:11] total 410648
[2025-10-12 19:00:11] -rw-r--r--. 2 boinc boinc 221961513 Oct 12 14:38 ATLAS.root_0
[2025-10-12 19:00:11] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:38 start_atlas.sh
[2025-10-12 19:00:11] -rw-r--r--. 2 boinc boinc    569682 Oct 12 14:38 input.tar.gz
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc 195389200 Oct 12 18:56 HITS.pool.root.1
[2025-10-12 19:00:11] -rw-------. 1 boinc boinc   2560000 Oct 12 19:00 result.tar.gz
19:00:13 (12657): run_atlas exited; CPU time 56515.768964
19:00:13 (12657): called boinc_finish(0)

</stderr_txt>
]]>

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