Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:37:20 (15791): wrapper (7.7.26015): starting
14:37:20 (15791): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:37:20] Arguments: --nthreads 8
[2025-10-12 14:37:20] Threads: 8
[2025-10-12 14:37:20] Checking for CVMFS
[2025-10-12 14:37:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:37:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:37:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:37:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:37:26] 2.11.2.0 1477 125695 107684 151620 2 11 23096322 25165824 4632 130560 0 44938643 99.886 19825967 2883 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 14:37:26] CVMFS is ok
[2025-10-12 14:37:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:37:26] Checking for apptainer binary...
[2025-10-12 14:37:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:37:26] Running /usr/bin/apptainer --version
[2025-10-12 14:37:26] apptainer version 1.3.2-1.el7
[2025-10-12 14:37:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:37:33] cg-vwn317.simple-grid.lan
[2025-10-12 14:37:33] apptainer works
[2025-10-12 14:37:33] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:37:33] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:37:33] Starting ATLAS job with PandaID=6839867510
[2025-10-12 14:37:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:00:26]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:00:26] 2025-10-12 16:59:19,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,177 | INFO     | time since job start (15450s) is within the limit (172800.0s)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,552 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:00:26] 2025-10-12 16:59:19,553 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-12 19:00:26] 2025-10-12 16:59:19,555 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6839867510/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,555 | INFO     | extracted standard info from prmon json
[2025-10-12 19:00:26] 2025-10-12 16:59:19,555 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:00:26] 2025-10-12 16:59:19,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:00:26] 2025-10-12 16:59:19,556 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:00:26] 2025-10-12 16:59:19,556 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:00:26] 2025-10-12 16:59:19,561 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:00:26] 2025-10-12 16:59:19,562 | INFO     | sum of square deviations: 4504437945.0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,564 | INFO     | sum of deviations: 46993925054.0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,564 | INFO     | mean x: 1760280785.5
[2025-10-12 19:00:26] 2025-10-12 16:59:19,564 | INFO     | mean y: 2465246.0901639345
[2025-10-12 19:00:26] 2025-10-12 16:59:19,564 | INFO     | -- intersect: -18362201848.415287
[2025-10-12 19:00:26] 2025-10-12 16:59:19,564 | INFO     | intersect: -18362201848.415287
[2025-10-12 19:00:26] 2025-10-12 16:59:19,565 | INFO     | chi2: 4.339939283920505
[2025-10-12 19:00:26] 2025-10-12 16:59:19,565 | INFO     | sum of square deviations: 4233158440.0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,567 | INFO     | sum of deviations: 62168060757.000046
[2025-10-12 19:00:26] 2025-10-12 16:59:19,568 | INFO     | mean x: 1760280633.0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,568 | INFO     | mean y: 2473624.640167364
[2025-10-12 19:00:26] 2025-10-12 16:59:19,568 | INFO     | -- intersect: -25848964466.51583
[2025-10-12 19:00:26] 2025-10-12 16:59:19,568 | INFO     | intersect: -25848964466.51583
[2025-10-12 19:00:26] 2025-10-12 16:59:19,568 | INFO     | chi2: 3.5882384621390515
[2025-10-12 19:00:26] 2025-10-12 16:59:19,568 | INFO     | current chi2=3.5882384621390515 (change=17.320537744998152 %)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,568 | INFO     | right removable region: 238
[2025-10-12 19:00:26] 2025-10-12 16:59:19,569 | INFO     | sum of square deviations: 4233158440.0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,571 | INFO     | sum of deviations: -24592181902.999992
[2025-10-12 19:00:26] 2025-10-12 16:59:19,571 | INFO     | mean x: 1760280938.0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,571 | INFO     | mean y: 2505404.221757322
[2025-10-12 19:00:26] 2025-10-12 16:59:19,571 | INFO     | -- intersect: 10228711118.288877
[2025-10-12 19:00:26] 2025-10-12 16:59:19,572 | INFO     | intersect: 10228711118.288877
[2025-10-12 19:00:26] 2025-10-12 16:59:19,572 | INFO     | chi2: 1.0143836468061793
[2025-10-12 19:00:26] 2025-10-12 16:59:19,572 | INFO     | current chi2=1.0143836468061793 (change=76.62677792372637 %)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,573 | INFO     | sum of square deviations: 3972995422.5
[2025-10-12 19:00:26] 2025-10-12 16:59:19,574 | INFO     | sum of deviations: -34313296660.000015
[2025-10-12 19:00:26] 2025-10-12 16:59:19,575 | INFO     | mean x: 1760281090.5
[2025-10-12 19:00:26] 2025-10-12 16:59:19,575 | INFO     | mean y: 2511060.8376068375
[2025-10-12 19:00:26] 2025-10-12 16:59:19,575 | INFO     | -- intersect: 15205409841.251398
[2025-10-12 19:00:26] 2025-10-12 16:59:19,575 | INFO     | intersect: 15205409841.251398
[2025-10-12 19:00:26] 2025-10-12 16:59:19,575 | INFO     | chi2: 0.9191223055958757
[2025-10-12 19:00:26] 2025-10-12 16:59:19,575 | INFO     | current chi2=0.9191223055958757 (change=9.3910564814641 %)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,575 | INFO     | left removable region: 20
[2025-10-12 19:00:26] 2025-10-12 16:59:19,576 | INFO     | sum of square deviations: 3212467674.5
[2025-10-12 19:00:26] 2025-10-12 16:59:19,578 | INFO     | sum of deviations: -3548768604.5000024
[2025-10-12 19:00:26] 2025-10-12 16:59:19,578 | INFO     | mean x: 1760281212.5
[2025-10-12 19:00:26] 2025-10-12 16:59:19,578 | INFO     | mean y: 2511268.1788990824
[2025-10-12 19:00:26] 2025-10-12 16:59:19,578 | INFO     | -- intersect: 1947069575.0522828
[2025-10-12 19:00:26] 2025-10-12 16:59:19,578 | INFO     | intersect: 1947069575.0522828
[2025-10-12 19:00:26] 2025-10-12 16:59:19,579 | INFO     | chi2: 0.06759323249183471
[2025-10-12 19:00:26] 2025-10-12 16:59:19,579 | INFO     | -- intersect: 1947069575.0522828
[2025-10-12 19:00:26] 2025-10-12 16:59:19,579 | INFO     | current memory leak: -1.10 B/s (using 218 data points, chi2=0.07)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | ..............................
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | . Timing measurements:
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | . get job = 0 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | . initial setup = 9 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | . payload setup = 127 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | . stage-in = 0 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,580 | INFO     | . payload execution = 15024 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,581 | INFO     | . stage-out = 8 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,581 | INFO     | . log creation = 1 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,581 | INFO     | ..............................
[2025-10-12 19:00:26] 2025-10-12 16:59:19,834 | INFO     | 
[2025-10-12 19:00:26] 2025-10-12 16:59:19,834 | INFO     | job summary report
[2025-10-12 19:00:26] 2025-10-12 16:59:19,834 | INFO     | --------------------------------------------------
[2025-10-12 19:00:26] 2025-10-12 16:59:19,834 | INFO     | PanDA job id: 6839867510
[2025-10-12 19:00:26] 2025-10-12 16:59:19,834 | INFO     | task id: 46676269
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | errors: (none)
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | pilot state: finished 
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | transexitcode: 0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | exeerrorcode: 0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | exeerrordiag: 
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | exitcode: 0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | exitmsg: OK
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | cpuconsumptiontime: 55845 s
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | nevents: 400
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | neventsw: 0
[2025-10-12 19:00:26] 2025-10-12 16:59:19,835 | INFO     | pid: 26429
[2025-10-12 19:00:26] 2025-10-12 16:59:19,836 | INFO     | pgrp: 26429
[2025-10-12 19:00:26] 2025-10-12 16:59:19,836 | INFO     | corecount: 8
[2025-10-12 19:00:26] 2025-10-12 16:59:19,836 | INFO     | event service: False
[2025-10-12 19:00:26] 2025-10-12 16:59:19,836 | INFO     | sizes: {0: 2348687, 1: 2348886, 12: 2348886, 22: 2348914, 33: 2348942, 44: 2348998, 55: 2349154, 65: 2349182, 76: 2349210, 87: 2349266, 89: 2349556, 98: 2349864, 1
[2025-10-12 19:00:26] 2025-10-12 16:59:19,836 | INFO     | --------------------------------------------------
[2025-10-12 19:00:26] 2025-10-12 16:59:19,836 | INFO     | 
[2025-10-12 19:00:26] 2025-10-12 16:59:19,836 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-10-12 19:00:26] 2025-10-12 16:59:20,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,468 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:00:26] 2025-10-12 16:59:20,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:00:26] 2025-10-12 16:59:20,469 | INFO     | job 6839867510 has completed (purged errors)
[2025-10-12 19:00:26] 2025-10-12 16:59:20,469 | INFO     | overall cleanup function is called
[2025-10-12 19:00:26] 2025-10-12 16:59:21,478 | INFO     | --- collectZombieJob: --- 10, [26429]
[2025-10-12 19:00:26] 2025-10-12 16:59:21,478 | INFO     | zombie collector waiting for pid 26429
[2025-10-12 19:00:26] 2025-10-12 16:59:21,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:00:26] 2025-10-12 16:59:21,478 | INFO     | collected zombie processes
[2025-10-12 19:00:26] 2025-10-12 16:59:21,479 | INFO     | will attempt to kill all subprocesses of pid=26429
[2025-10-12 19:00:26] 2025-10-12 16:59:21,579 | INFO     | process IDs to be killed: [26429] (in reverse order)
[2025-10-12 19:00:26] 2025-10-12 16:59:22,613 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:00:26] 2025-10-12 16:59:22,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:00:26] 2025-10-12 16:59:22,620 | INFO     | did not find any defunct processes belonging to 26429
[2025-10-12 19:00:26] 2025-10-12 16:59:22,624 | INFO     | did not find any defunct processes belonging to 26429
[2025-10-12 19:00:26] 2025-10-12 16:59:22,624 | INFO     | ready for new job
[2025-10-12 19:00:26] 2025-10-12 16:59:22,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:00:26] 2025-10-12 16:59:22,626 | INFO     | ***************************************
[2025-10-12 19:00:26] 2025-10-12 16:59:22,627 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:00:26] 2025-10-12 16:59:22,627 | INFO     | ***************************************
[2025-10-12 19:00:26] 2025-10-12 16:59:22,627 | INFO     | 
[2025-10-12 19:00:26] 2025-10-12 16:59:22,627 | INFO     | pilot is running in a VM
[2025-10-12 19:00:26] 2025-10-12 16:59:22,628 | INFO     | architecture information:
[2025-10-12 19:00:26] 2025-10-12 16:59:22,634 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:00:26] 2025-10-12 16:59:22,862 | INFO     | cat /etc/os-release:
[2025-10-12 19:00:26] NAME="CentOS Linux"
[2025-10-12 19:00:26] VERSION="7 (Core)"
[2025-10-12 19:00:26] ID="centos"
[2025-10-12 19:00:26] ID_LIKE="rhel fedora"
[2025-10-12 19:00:26] VERSION_ID="7"
[2025-10-12 19:00:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:00:26] ANSI_COLOR="0;31"
[2025-10-12 19:00:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:00:26] HOME_URL="https://www.centos.org/"
[2025-10-12 19:00:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:00:26] 
[2025-10-12 19:00:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:00:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:00:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:00:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:00:26] 
[2025-10-12 19:00:26] 2025-10-12 16:59:22,863 | INFO     | ***************************************
[2025-10-12 19:00:26] 2025-10-12 16:59:23,366 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-10-12 19:00:26] 2025-10-12 16:59:23,551 | INFO     | sufficient remaining disk space (495701721088 B)
[2025-10-12 19:00:26] 2025-10-12 16:59:23,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:00:26] 2025-10-12 16:59:23,551 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:00:26] 2025-10-12 16:59:23,551 | INFO     | update_server=False
[2025-10-12 19:00:26] 2025-10-12 16:59:23,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:00:26] 2025-10-12 16:59:23,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:00:26] 2025-10-12 16:59:23,553 | INFO     | aborting loop
[2025-10-12 19:00:26] 2025-10-12 16:59:23,563 | INFO     | all payload control threads have been joined
[2025-10-12 19:00:26] 2025-10-12 16:59:23,574 | INFO     | all data control threads have been joined
[2025-10-12 19:00:26] 2025-10-12 16:59:23,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:00:26] 2025-10-12 16:59:24,299 | INFO     | all job control threads have been joined
[2025-10-12 19:00:26] 2025-10-12 16:59:24,558 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:24,559 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:24,569 | INFO     | [payload] control thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:24,580 | INFO     | [data] control thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:24,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:24,715 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:24,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:00:26] 2025-10-12 16:59:24,756 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:00:26] 2025-10-12 16:59:24,768 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:24,916 | INFO     | [job] validate thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:25,250 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:25,266 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:25,305 | INFO     | [job] control thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:25,715 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:25,762 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:25,890 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:25,973 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:28,754 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:00:26] 2025-10-12 16:59:52,398 | INFO     | PID=19887 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:00:26] 2025-10-12 16:59:52,398 | INFO     | .. there are 9 such processes running
[2025-10-12 19:00:26] 2025-10-12 16:59:52,399 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:00:26] 2025-10-12 16:59:52,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:00:26] 2025-10-12 16:59:52,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:00:26] 2025-10-12 17:00:14,940 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:00:26] 2025-10-12 17:00:16,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666028099392)>', '<ExcThread(monitor, started 140665589581568)>']
[2025-10-12 19:00:26] 2025-10-12 17:00:17,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:00:26] 2025-10-12 17:00:17,547 | INFO     | [monitor] control thread has ended
[2025-10-12 19:00:26] 2025-10-12 17:00:21,846 | INFO     | all workflow threads have been joined
[2025-10-12 19:00:26] 2025-10-12 17:00:21,846 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:00:26] 2025-10-12 17:00:21,846 | INFO     | traces error code: 0
[2025-10-12 19:00:26] 2025-10-12 17:00:21,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:00:26] 2025-10-12 17:00:22,200 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:00:26] 2025-10-12 17:00:22,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:00:26] 2025-10-12 17:00:22,351 [wrapper] pilotpid: 19887
[2025-10-12 19:00:26] 2025-10-12 17:00:22,471 [wrapper] Pilot exit status: 0
[2025-10-12 19:00:26] 2025-10-12 17:00:22,814 [wrapper] pandaids: 6839867510
[2025-10-12 19:00:26] 2025-10-12 17:00:23,693 [wrapper] cleanup supervisor_pilot 19334 19888
[2025-10-12 19:00:26] 2025-10-12 17:00:23,770 [wrapper] Test setup, not cleaning
[2025-10-12 19:00:26] 2025-10-12 17:00:23,813 [wrapper] apfmon messages muted
[2025-10-12 19:00:26] 2025-10-12 17:00:23,903 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:00:26] 2025-10-12 17:00:23,998 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:00:26]  *** Error codes and diagnostics ***
[2025-10-12 19:00:26]     "exeErrorCode": 0,
[2025-10-12 19:00:26]     "exeErrorDiag": "",
[2025-10-12 19:00:26]     "pilotErrorCode": 0,
[2025-10-12 19:00:26]     "pilotErrorDiag": "",
[2025-10-12 19:00:26]  *** Listing of results directory ***
[2025-10-12 19:00:26] total 419704
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc    557409 Oct 12 12:38 pilot3.tar.gz
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc      5112 Oct 12 12:56 queuedata.json
[2025-10-12 19:00:26] -rwx------. 1 boinc boinc     36292 Oct 12 12:57 runpilot2-wrapper.sh
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc       100 Oct 12 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:00:26] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 14:37 run_atlas
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc       105 Oct 12 14:37 job.xml
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc      6382 Oct 12 14:37 init_data.xml
[2025-10-12 19:00:26] -rw-r--r--. 2 boinc boinc 222248950 Oct 12 14:37 EVNT.46676267._003635.pool.root.1
[2025-10-12 19:00:26] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:37 start_atlas.sh
[2025-10-12 19:00:26] drwxrwx--x. 2 boinc boinc        68 Oct 12 14:37 shared
[2025-10-12 19:00:26] -rw-r--r--. 2 boinc boinc    569684 Oct 12 14:37 input.tar.gz
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc         0 Oct 12 14:37 boinc_lockfile
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc      2550 Oct 12 14:37 pandaJob.out
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc    975512 Oct 12 14:41 agis_schedconf.cvmfs.json
[2025-10-12 19:00:26] drwx------. 5 boinc boinc      4096 Oct 12 14:41 pilot3
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc 198531232 Oct 12 18:56 HITS.46676269._076389.pool.root.1
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc       531 Oct 12 18:56 boinc_task_state.xml
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc      1021 Oct 12 18:57 memory_monitor_summary.json
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc   1560580 Oct 12 18:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc    486803 Oct 12 18:57 log.46676269._076389.job.log.tgz.1
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc      7785 Oct 12 18:59 heartbeat.json
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc        95 Oct 12 18:59 pilot_heartbeat.json
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc        28 Oct 12 19:00 wrapper_checkpoint.txt
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc      8192 Oct 12 19:00 boinc_mmap_file
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc      4885 Oct 12 19:00 pilotlog.txt
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc   2069465 Oct 12 19:00 log.46676269._076389.job.log.1
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc       357 Oct 12 19:00 output.list
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc       620 Oct 12 19:00 runtime_log
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc   2570240 Oct 12 19:00 result.tar.gz
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc      8717 Oct 12 19:00 runtime_log.err
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc       657 Oct 12 19:00 N3bNDmow8R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmIhTMDmbgTrim.diag
[2025-10-12 19:00:26] -rw-r--r--. 1 boinc boinc     20827 Oct 12 19:00 stderr.txt
[2025-10-12 19:00:26] HITS file was successfully produced:
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc 198531232 Oct 12 18:56 shared/HITS.pool.root.1
[2025-10-12 19:00:26]  *** Contents of shared directory: ***
[2025-10-12 19:00:26] total 414008
[2025-10-12 19:00:26] -rw-r--r--. 2 boinc boinc 222248950 Oct 12 14:37 ATLAS.root_0
[2025-10-12 19:00:26] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:37 start_atlas.sh
[2025-10-12 19:00:26] -rw-r--r--. 2 boinc boinc    569684 Oct 12 14:37 input.tar.gz
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc 198531232 Oct 12 18:56 HITS.pool.root.1
[2025-10-12 19:00:26] -rw-------. 1 boinc boinc   2570240 Oct 12 19:00 result.tar.gz
19:00:27 (15791): run_atlas exited; CPU time 56061.265090
19:00:27 (15791): called boinc_finish(0)

</stderr_txt>
]]>

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