Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:41:14 (21472): wrapper (7.7.26015): starting
18:41:14 (21472): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:41:14] Arguments: --nthreads 8
[2025-10-12 18:41:14] Threads: 8
[2025-10-12 18:41:14] Checking for CVMFS
[2025-10-12 18:41:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:41:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:41:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:41:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:41:17] 2.11.2.0 15701 24759 83096 151627 3 60 18288466 25165825 4632 130560 0 6254876 99.893 2552757 1815 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 18:41:17] CVMFS is ok
[2025-10-12 18:41:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:41:17] Checking for apptainer binary...
[2025-10-12 18:41:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:41:17] Running /usr/bin/apptainer --version
[2025-10-12 18:41:17] apptainer version 1.3.2-1.el7
[2025-10-12 18:41:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:41:23] cg-vwn419.simple-grid.lan
[2025-10-12 18:41:23] apptainer works
[2025-10-12 18:41:23] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:41:23] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:41:23] Starting ATLAS job with PandaID=6839867622
[2025-10-12 18:41:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:08:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:08:31] 2025-10-12 21:07:45,509 | INFO     | chi2: 0.044927894699255094
[2025-10-12 23:08:31] 2025-10-12 21:07:45,509 | INFO     | current chi2=0.044927894699255094 (change=25.601261147315956 %)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,509 | INFO     | sum of square deviations: 3723716330.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,511 | INFO     | sum of deviations: 9013508229.999998
[2025-10-12 23:08:31] 2025-10-12 21:07:45,512 | INFO     | mean x: 1760296154.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,512 | INFO     | mean y: 2503204.1091703055
[2025-10-12 23:08:31] 2025-10-12 21:07:45,512 | INFO     | -- intersect: -4258413166.853046
[2025-10-12 23:08:31] 2025-10-12 21:07:45,512 | INFO     | intersect: -4258413166.853046
[2025-10-12 23:08:31] 2025-10-12 21:07:45,512 | INFO     | chi2: 0.002332542024203054
[2025-10-12 23:08:31] 2025-10-12 21:07:45,513 | INFO     | current chi2=0.002332542024203054 (change=94.80825433771832 %)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,513 | INFO     | sum of square deviations: 3485088600.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,515 | INFO     | sum of deviations: 7159977083.5
[2025-10-12 23:08:31] 2025-10-12 21:07:45,515 | INFO     | mean x: 1760296306.5
[2025-10-12 23:08:31] 2025-10-12 21:07:45,515 | INFO     | mean y: 2504387.6383928573
[2025-10-12 23:08:31] 2025-10-12 21:07:45,515 | INFO     | -- intersect: -3613954951.36082
[2025-10-12 23:08:31] 2025-10-12 21:07:45,515 | INFO     | intersect: -3613954951.36082
[2025-10-12 23:08:31] 2025-10-12 21:07:45,516 | INFO     | chi2: 0.0011405727693290077
[2025-10-12 23:08:31] 2025-10-12 21:07:45,516 | INFO     | current chi2=0.0011405727693290077 (change=51.10172689305777 %)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,516 | INFO     | sum of square deviations: 3256879670.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,518 | INFO     | sum of deviations: 5765267624.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,518 | INFO     | mean x: 1760296459.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,519 | INFO     | mean y: 2505319.2328767125
[2025-10-12 23:08:31] 2025-10-12 21:07:45,519 | INFO     | -- intersect: -3113538628.3516355
[2025-10-12 23:08:31] 2025-10-12 21:07:45,519 | INFO     | intersect: -3113538628.3516355
[2025-10-12 23:08:31] 2025-10-12 21:07:45,519 | INFO     | chi2: 0.0004904212620692378
[2025-10-12 23:08:31] 2025-10-12 21:07:45,519 | INFO     | current chi2=0.0004904212620692378 (change=57.002194401173554 %)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,520 | INFO     | sum of square deviations: 3038856977.5
[2025-10-12 23:08:31] 2025-10-12 21:07:45,522 | INFO     | sum of deviations: 4866614190.5
[2025-10-12 23:08:31] 2025-10-12 21:07:45,522 | INFO     | mean x: 1760296611.5
[2025-10-12 23:08:31] 2025-10-12 21:07:45,522 | INFO     | mean y: 2505946.378504673
[2025-10-12 23:08:31] 2025-10-12 21:07:45,522 | INFO     | -- intersect: -2816542311.71444
[2025-10-12 23:08:31] 2025-10-12 21:07:45,522 | INFO     | intersect: -2816542311.71444
[2025-10-12 23:08:31] 2025-10-12 21:07:45,523 | INFO     | chi2: 0.00025481292337584235
[2025-10-12 23:08:31] 2025-10-12 21:07:45,523 | INFO     | current chi2=0.00025481292337584235 (change=48.04203180328919 %)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,523 | INFO     | sum of square deviations: 2830787960.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,525 | INFO     | sum of deviations: 4535617972.999997
[2025-10-12 23:08:31] 2025-10-12 21:07:45,525 | INFO     | mean x: 1760296764.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,525 | INFO     | mean y: 2506188.889952153
[2025-10-12 23:08:31] 2025-10-12 21:07:45,525 | INFO     | -- intersect: -2817921816.820562
[2025-10-12 23:08:31] 2025-10-12 21:07:45,525 | INFO     | intersect: -2817921816.820562
[2025-10-12 23:08:31] 2025-10-12 21:07:45,526 | INFO     | chi2: 0.0002546159313445897
[2025-10-12 23:08:31] 2025-10-12 21:07:45,526 | INFO     | current chi2=0.0002546159313445897 (change=0.07730849308694648 %)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,526 | INFO     | left removable region: 80
[2025-10-12 23:08:31] 2025-10-12 21:07:45,526 | INFO     | sum of square deviations: 1342841922.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,527 | INFO     | sum of deviations: 1924479789.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,528 | INFO     | mean x: 1760297801.0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,528 | INFO     | mean y: 2507936.8711656444
[2025-10-12 23:08:31] 2025-10-12 21:07:45,528 | INFO     | -- intersect: -2520244358.201764
[2025-10-12 23:08:31] 2025-10-12 21:07:45,528 | INFO     | intersect: -2520244358.201764
[2025-10-12 23:08:31] 2025-10-12 21:07:45,528 | INFO     | chi2: 0.00013497829395898406
[2025-10-12 23:08:31] 2025-10-12 21:07:45,528 | INFO     | -- intersect: -2520244358.201764
[2025-10-12 23:08:31] 2025-10-12 21:07:45,529 | INFO     | current memory leak: 1.43 B/s (using 163 data points, chi2=0.00)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,529 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,529 | INFO     | ..............................
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . Timing measurements:
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . get job = 0 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . initial setup = 14 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . payload setup = 139 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . stage-in = 0 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . payload execution = 15345 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . stage-out = 3 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | . log creation = 1 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,530 | INFO     | ..............................
[2025-10-12 23:08:31] 2025-10-12 21:07:45,679 | INFO     | 
[2025-10-12 23:08:31] 2025-10-12 21:07:45,679 | INFO     | job summary report
[2025-10-12 23:08:31] 2025-10-12 21:07:45,679 | INFO     | --------------------------------------------------
[2025-10-12 23:08:31] 2025-10-12 21:07:45,679 | INFO     | PanDA job id: 6839867622
[2025-10-12 23:08:31] 2025-10-12 21:07:45,679 | INFO     | task id: 46676269
[2025-10-12 23:08:31] 2025-10-12 21:07:45,679 | INFO     | errors: (none)
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | pilot state: finished 
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | transexitcode: 0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | exeerrorcode: 0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | exeerrordiag: 
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | exitcode: 0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | exitmsg: OK
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | cpuconsumptiontime: 57627 s
[2025-10-12 23:08:31] 2025-10-12 21:07:45,680 | INFO     | nevents: 400
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | neventsw: 0
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | pid: 32110
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | pgrp: 32110
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | corecount: 8
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | event service: False
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | sizes: {0: 2348029, 1: 2348715, 2: 2348914, 13: 2348914, 24: 2348970, 35: 2348998, 45: 2349154, 56: 2349182, 67: 2349210, 78: 2349238, 88: 2349294, 94: 2349864, 99
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | --------------------------------------------------
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | 
[2025-10-12 23:08:31] 2025-10-12 21:07:45,681 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-12 23:08:31] 2025-10-12 21:07:46,148 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,149 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,150 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:08:31] 2025-10-12 21:07:46,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:08:31] 2025-10-12 21:07:46,151 | INFO     | job 6839867622 has completed (purged errors)
[2025-10-12 23:08:31] 2025-10-12 21:07:46,151 | INFO     | overall cleanup function is called
[2025-10-12 23:08:31] 2025-10-12 21:07:47,160 | INFO     | --- collectZombieJob: --- 10, [32110]
[2025-10-12 23:08:31] 2025-10-12 21:07:47,160 | INFO     | zombie collector waiting for pid 32110
[2025-10-12 23:08:31] 2025-10-12 21:07:47,160 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:08:31] 2025-10-12 21:07:47,160 | INFO     | collected zombie processes
[2025-10-12 23:08:31] 2025-10-12 21:07:47,160 | INFO     | will attempt to kill all subprocesses of pid=32110
[2025-10-12 23:08:31] 2025-10-12 21:07:47,283 | INFO     | process IDs to be killed: [32110] (in reverse order)
[2025-10-12 23:08:31] 2025-10-12 21:07:48,180 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:08:31] 2025-10-12 21:07:48,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:08:31] 2025-10-12 21:07:48,184 | INFO     | did not find any defunct processes belonging to 32110
[2025-10-12 23:08:31] 2025-10-12 21:07:48,187 | INFO     | did not find any defunct processes belonging to 32110
[2025-10-12 23:08:31] 2025-10-12 21:07:48,188 | INFO     | ready for new job
[2025-10-12 23:08:31] 2025-10-12 21:07:48,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:08:31] 2025-10-12 21:07:48,190 | INFO     | ***************************************
[2025-10-12 23:08:31] 2025-10-12 21:07:48,191 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:08:31] 2025-10-12 21:07:48,191 | INFO     | ***************************************
[2025-10-12 23:08:31] 2025-10-12 21:07:48,191 | INFO     | 
[2025-10-12 23:08:31] 2025-10-12 21:07:48,191 | INFO     | pilot is running in a VM
[2025-10-12 23:08:31] 2025-10-12 21:07:48,192 | INFO     | architecture information:
[2025-10-12 23:08:31] 2025-10-12 21:07:48,205 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:08:31] 2025-10-12 21:07:48,342 | INFO     | cat /etc/os-release:
[2025-10-12 23:08:31] NAME="CentOS Linux"
[2025-10-12 23:08:31] VERSION="7 (Core)"
[2025-10-12 23:08:31] ID="centos"
[2025-10-12 23:08:31] ID_LIKE="rhel fedora"
[2025-10-12 23:08:31] VERSION_ID="7"
[2025-10-12 23:08:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:08:31] ANSI_COLOR="0;31"
[2025-10-12 23:08:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:08:31] HOME_URL="https://www.centos.org/"
[2025-10-12 23:08:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:08:31] 
[2025-10-12 23:08:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:08:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:08:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:08:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:08:31] 
[2025-10-12 23:08:31] 2025-10-12 21:07:48,342 | INFO     | ***************************************
[2025-10-12 23:08:31] 2025-10-12 21:07:48,846 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-12 23:08:31] 2025-10-12 21:07:49,107 | INFO     | sufficient remaining disk space (492875808768 B)
[2025-10-12 23:08:31] 2025-10-12 21:07:49,108 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:08:31] 2025-10-12 21:07:49,108 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:08:31] 2025-10-12 21:07:49,108 | INFO     | update_server=False
[2025-10-12 23:08:31] 2025-10-12 21:07:49,108 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:08:31] 2025-10-12 21:07:49,109 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:08:31] 2025-10-12 21:07:49,429 | INFO     | all data control threads have been joined
[2025-10-12 23:08:31] 2025-10-12 21:07:50,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:08:31] 2025-10-12 21:07:50,010 | INFO     | aborting loop
[2025-10-12 23:08:31] 2025-10-12 21:07:50,114 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:50,123 | INFO     | all payload control threads have been joined
[2025-10-12 23:08:31] 2025-10-12 21:07:50,435 | INFO     | [data] control thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:50,595 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:50,687 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:50,700 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:08:31] 2025-10-12 21:07:50,820 | INFO     | all job control threads have been joined
[2025-10-12 23:08:31] 2025-10-12 21:07:50,967 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,016 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,113 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,115 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,129 | INFO     | [payload] control thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,163 | INFO     | [job] validate thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,219 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,490 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,706 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:51,826 | INFO     | [job] control thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:52,061 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:08:31] 2025-10-12 21:07:56,070 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:07:59,271 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:08:31] 2025-10-12 21:08:00,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:08:31] 2025-10-12 21:08:18,607 | INFO     | PID=25237 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:08:31] 2025-10-12 21:08:18,607 | INFO     | .. there are 9 such processes running
[2025-10-12 23:08:31] 2025-10-12 21:08:18,608 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:08:31] 2025-10-12 21:08:18,608 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:08:31] 2025-10-12 21:08:18,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:08:31] 2025-10-12 21:08:22,469 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:08:31] 2025-10-12 21:08:22,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139945840117568)>', '<ExcThread(monitor, started 139945117210368)>']
[2025-10-12 23:08:31] 2025-10-12 21:08:23,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:08:31] 2025-10-12 21:08:23,639 | INFO     | [monitor] control thread has ended
[2025-10-12 23:08:31] 2025-10-12 21:08:27,686 | INFO     | all workflow threads have been joined
[2025-10-12 23:08:31] 2025-10-12 21:08:27,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:08:31] 2025-10-12 21:08:27,686 | INFO     | traces error code: 0
[2025-10-12 23:08:31] 2025-10-12 21:08:27,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:08:31] 2025-10-12 21:08:27,958 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:08:31] 2025-10-12 21:08:27,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:08:31] 2025-10-12 21:08:28,021 [wrapper] pilotpid: 25237
[2025-10-12 23:08:31] 2025-10-12 21:08:28,106 [wrapper] Pilot exit status: 0
[2025-10-12 23:08:31] 2025-10-12 21:08:28,489 [wrapper] pandaids: 6839867622
[2025-10-12 23:08:31] 2025-10-12 21:08:29,736 [wrapper] cleanup supervisor_pilot 26385 25238
[2025-10-12 23:08:31] 2025-10-12 21:08:29,876 [wrapper] Test setup, not cleaning
[2025-10-12 23:08:31] 2025-10-12 21:08:30,002 [wrapper] apfmon messages muted
[2025-10-12 23:08:31] 2025-10-12 21:08:30,149 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:08:31] 2025-10-12 21:08:30,267 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:08:31]  *** Error codes and diagnostics ***
[2025-10-12 23:08:31]     "exeErrorCode": 0,
[2025-10-12 23:08:31]     "exeErrorDiag": "",
[2025-10-12 23:08:31]     "pilotErrorCode": 0,
[2025-10-12 23:08:31]     "pilotErrorDiag": "",
[2025-10-12 23:08:31]  *** Listing of results directory ***
[2025-10-12 23:08:31] total 420496
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc    557409 Oct 12 12:38 pilot3.tar.gz
[2025-10-12 23:08:31] -rwx------. 1 boinc boinc     36292 Oct 12 12:55 runpilot2-wrapper.sh
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc      5112 Oct 12 12:55 queuedata.json
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc       100 Oct 12 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:08:31] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 18:41 run_atlas
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc       105 Oct 12 18:41 job.xml
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc      6383 Oct 12 18:41 init_data.xml
[2025-10-12 23:08:31] -rw-r--r--. 2 boinc boinc 219048037 Oct 12 18:41 EVNT.46676267._003645.pool.root.1
[2025-10-12 23:08:31] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:41 start_atlas.sh
[2025-10-12 23:08:31] drwxrwx--x. 2 boinc boinc        68 Oct 12 18:41 shared
[2025-10-12 23:08:31] -rw-r--r--. 2 boinc boinc    569680 Oct 12 18:41 input.tar.gz
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc         0 Oct 12 18:41 boinc_lockfile
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc      2550 Oct 12 18:41 pandaJob.out
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc    975528 Oct 12 18:44 agis_schedconf.cvmfs.json
[2025-10-12 23:08:31] drwx------. 5 boinc boinc      4096 Oct 12 18:44 pilot3
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc 202447435 Oct 12 23:05 HITS.46676269._076501.pool.root.1
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc       531 Oct 12 23:05 boinc_task_state.xml
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc      1015 Oct 12 23:06 memory_monitor_summary.json
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc   1560580 Oct 12 23:06 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc    476552 Oct 12 23:06 log.46676269._076501.job.log.tgz.1
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc      7773 Oct 12 23:07 heartbeat.json
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc        95 Oct 12 23:08 pilot_heartbeat.json
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc      4957 Oct 12 23:08 pilotlog.txt
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc   2123094 Oct 12 23:08 log.46676269._076501.job.log.1
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc        28 Oct 12 23:08 wrapper_checkpoint.txt
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc      8192 Oct 12 23:08 boinc_mmap_file
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc       357 Oct 12 23:08 output.list
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc       620 Oct 12 23:08 runtime_log
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc   2621440 Oct 12 23:08 result.tar.gz
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc      8717 Oct 12 23:08 runtime_log.err
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc       657 Oct 12 23:08 lOeKDmBv8R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQgTMDm8JjWtn.diag
[2025-10-12 23:08:31] -rw-r--r--. 1 boinc boinc     20682 Oct 12 23:08 stderr.txt
[2025-10-12 23:08:31] HITS file was successfully produced:
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc 202447435 Oct 12 23:05 shared/HITS.pool.root.1
[2025-10-12 23:08:31]  *** Contents of shared directory: ***
[2025-10-12 23:08:31] total 414756
[2025-10-12 23:08:31] -rw-r--r--. 2 boinc boinc 219048037 Oct 12 18:41 ATLAS.root_0
[2025-10-12 23:08:31] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:41 start_atlas.sh
[2025-10-12 23:08:31] -rw-r--r--. 2 boinc boinc    569680 Oct 12 18:41 input.tar.gz
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc 202447435 Oct 12 23:05 HITS.pool.root.1
[2025-10-12 23:08:31] -rw-------. 1 boinc boinc   2621440 Oct 12 23:08 result.tar.gz
23:08:32 (21472): run_atlas exited; CPU time 57851.096771
23:08:32 (21472): called boinc_finish(0)

</stderr_txt>
]]>

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