Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:35:33 (13555): wrapper (7.7.26015): starting
18:35:33 (13555): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:35:33] Arguments: --nthreads 8
[2025-10-12 18:35:33] Threads: 8
[2025-10-12 18:35:33] Checking for CVMFS
[2025-10-12 18:35:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:35:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:35:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:35:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:35:36] 2.11.2.0 16647 220821 142220 151627 0 60 13305221 25165825 4632 130560 0 148433829 99.903 68829643 4556 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 18:35:36] CVMFS is ok
[2025-10-12 18:35:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:35:36] Checking for apptainer binary...
[2025-10-12 18:35:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:35:36] Running /usr/bin/apptainer --version
[2025-10-12 18:35:36] apptainer version 1.3.2-1.el7
[2025-10-12 18:35:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:35:50] cg-vwn490.simple-grid.lan
[2025-10-12 18:35:50] apptainer works
[2025-10-12 18:35:50] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:35:50] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:35:50] Starting ATLAS job with PandaID=6838850535
[2025-10-12 18:35:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:34:09]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:34:09] 2025-10-12 20:33:01,147 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-10-12 22:34:09] 2025-10-12 20:33:01,149 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6838850535/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:34:09] 2025-10-12 20:33:01,150 | INFO     | extracted standard info from prmon json
[2025-10-12 22:34:09] 2025-10-12 20:33:01,150 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:34:09] 2025-10-12 20:33:01,150 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:34:09] 2025-10-12 20:33:01,150 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:34:09] 2025-10-12 20:33:01,150 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:34:09] 2025-10-12 20:33:01,155 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:34:09] 2025-10-12 20:33:01,156 | INFO     | sum of square deviations: 3301699115.0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,157 | INFO     | sum of deviations: 26395469819.999992
[2025-10-12 22:34:09] 2025-10-12 20:33:01,158 | INFO     | mean x: 1760294346.5
[2025-10-12 22:34:09] 2025-10-12 20:33:01,158 | INFO     | mean y: 2466988.581818182
[2025-10-12 22:34:09] 2025-10-12 20:33:01,158 | INFO     | -- intersect: -14070225488.533062
[2025-10-12 22:34:09] 2025-10-12 20:33:01,158 | INFO     | intersect: -14070225488.533062
[2025-10-12 22:34:09] 2025-10-12 20:33:01,158 | INFO     | chi2: 4.1454231542866875
[2025-10-12 22:34:09] 2025-10-12 20:33:01,159 | INFO     | sum of square deviations: 3081657780.0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,160 | INFO     | sum of deviations: 40276582788.99999
[2025-10-12 22:34:09] 2025-10-12 20:33:01,161 | INFO     | mean x: 1760294194.0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,161 | INFO     | mean y: 2476422.3255813955
[2025-10-12 22:34:09] 2025-10-12 20:33:01,161 | INFO     | -- intersect: -23004177755.101288
[2025-10-12 22:34:09] 2025-10-12 20:33:01,161 | INFO     | intersect: -23004177755.101288
[2025-10-12 22:34:09] 2025-10-12 20:33:01,161 | INFO     | chi2: 3.396132235974427
[2025-10-12 22:34:09] 2025-10-12 20:33:01,161 | INFO     | current chi2=3.396132235974427 (change=18.075137095170515 %)
[2025-10-12 22:34:09] 2025-10-12 20:33:01,162 | INFO     | right removable region: 214
[2025-10-12 22:34:09] 2025-10-12 20:33:01,162 | INFO     | sum of square deviations: 3081657780.0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,164 | INFO     | sum of deviations: -32883841265.0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,164 | INFO     | mean x: 1760294499.0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,164 | INFO     | mean y: 2507873.0837209304
[2025-10-12 22:34:09] 2025-10-12 20:33:01,164 | INFO     | -- intersect: 18786308352.307827
[2025-10-12 22:34:09] 2025-10-12 20:33:01,164 | INFO     | intersect: 18786308352.307827
[2025-10-12 22:34:09] 2025-10-12 20:33:01,164 | INFO     | chi2: 0.9890581707420825
[2025-10-12 22:34:09] 2025-10-12 20:33:01,165 | INFO     | current chi2=0.9890581707420825 (change=76.14095994713301 %)
[2025-10-12 22:34:09] 2025-10-12 20:33:01,165 | INFO     | sum of square deviations: 2871616632.5
[2025-10-12 22:34:09] 2025-10-12 20:33:01,167 | INFO     | sum of deviations: -36569917209.5
[2025-10-12 22:34:09] 2025-10-12 20:33:01,167 | INFO     | mean x: 1760294651.5
[2025-10-12 22:34:09] 2025-10-12 20:33:01,167 | INFO     | mean y: 2510495.376190476
[2025-10-12 22:34:09] 2025-10-12 20:33:01,167 | INFO     | -- intersect: 22419788951.392605
[2025-10-12 22:34:09] 2025-10-12 20:33:01,167 | INFO     | intersect: 22419788951.392605
[2025-10-12 22:34:09] 2025-10-12 20:33:01,167 | INFO     | chi2: 0.9414959461926611
[2025-10-12 22:34:09] 2025-10-12 20:33:01,168 | INFO     | current chi2=0.9414959461926611 (change=4.808839960720998 %)
[2025-10-12 22:34:09] 2025-10-12 20:33:01,168 | INFO     | left removable region: 20
[2025-10-12 22:34:09] 2025-10-12 20:33:01,168 | INFO     | sum of square deviations: 2263977332.5
[2025-10-12 22:34:09] 2025-10-12 20:33:01,170 | INFO     | sum of deviations: -8018431974.500007
[2025-10-12 22:34:09] 2025-10-12 20:33:01,170 | INFO     | mean x: 1760294773.5
[2025-10-12 22:34:09] 2025-10-12 20:33:01,170 | INFO     | mean y: 2510060.2731958763
[2025-10-12 22:34:09] 2025-10-12 20:33:01,170 | INFO     | -- intersect: 6237026499.000679
[2025-10-12 22:34:09] 2025-10-12 20:33:01,170 | INFO     | intersect: 6237026499.000679
[2025-10-12 22:34:09] 2025-10-12 20:33:01,170 | INFO     | chi2: 0.08907288453866072
[2025-10-12 22:34:09] 2025-10-12 20:33:01,171 | INFO     | -- intersect: 6237026499.000679
[2025-10-12 22:34:09] 2025-10-12 20:33:01,171 | INFO     | current memory leak: -3.54 B/s (using 194 data points, chi2=0.09)
[2025-10-12 22:34:09] 2025-10-12 20:33:01,171 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | ..............................
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . Timing measurements:
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . get job = 0 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . initial setup = 8 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . payload setup = 138 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . stage-in = 0 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . payload execution = 13575 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . stage-out = 4 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | . log creation = 1 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,172 | INFO     | ..............................
[2025-10-12 22:34:09] 2025-10-12 20:33:01,822 | INFO     | 
[2025-10-12 22:34:09] 2025-10-12 20:33:01,822 | INFO     | job summary report
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | --------------------------------------------------
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | PanDA job id: 6838850535
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | task id: 46676269
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | errors: (none)
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | pilot state: finished 
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | transexitcode: 0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | exeerrorcode: 0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | exeerrordiag: 
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | exitcode: 0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | exitmsg: OK
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | cpuconsumptiontime: 51652 s
[2025-10-12 22:34:09] 2025-10-12 20:33:01,823 | INFO     | nevents: 400
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | neventsw: 0
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | pid: 23901
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | pgrp: 23901
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | corecount: 8
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | event service: False
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 22: 2348913, 33: 2348941, 44: 2348997, 54: 2349153, 65: 2349181, 76: 2349209, 87: 2349265, 93: 2349555, 97: 2349863, 1
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | --------------------------------------------------
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | 
[2025-10-12 22:34:09] 2025-10-12 20:33:01,824 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,145 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:34:09] 2025-10-12 20:33:02,146 | INFO     | job 6838850535 has completed (purged errors)
[2025-10-12 22:34:09] 2025-10-12 20:33:02,146 | INFO     | overall cleanup function is called
[2025-10-12 22:34:09] 2025-10-12 20:33:03,154 | INFO     | --- collectZombieJob: --- 10, [23901]
[2025-10-12 22:34:09] 2025-10-12 20:33:03,154 | INFO     | zombie collector waiting for pid 23901
[2025-10-12 22:34:09] 2025-10-12 20:33:03,155 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:34:09] 2025-10-12 20:33:03,155 | INFO     | collected zombie processes
[2025-10-12 22:34:09] 2025-10-12 20:33:03,155 | INFO     | will attempt to kill all subprocesses of pid=23901
[2025-10-12 22:34:09] 2025-10-12 20:33:03,263 | INFO     | process IDs to be killed: [23901] (in reverse order)
[2025-10-12 22:34:09] 2025-10-12 20:33:03,945 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:34:09] 2025-10-12 20:33:03,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:34:09] 2025-10-12 20:33:03,948 | INFO     | did not find any defunct processes belonging to 23901
[2025-10-12 22:34:09] 2025-10-12 20:33:03,951 | INFO     | did not find any defunct processes belonging to 23901
[2025-10-12 22:34:09] 2025-10-12 20:33:03,951 | INFO     | ready for new job
[2025-10-12 22:34:09] 2025-10-12 20:33:03,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:34:09] 2025-10-12 20:33:03,953 | INFO     | ***************************************
[2025-10-12 22:34:09] 2025-10-12 20:33:03,953 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:34:09] 2025-10-12 20:33:03,954 | INFO     | ***************************************
[2025-10-12 22:34:09] 2025-10-12 20:33:03,954 | INFO     | 
[2025-10-12 22:34:09] 2025-10-12 20:33:03,954 | INFO     | pilot is running in a VM
[2025-10-12 22:34:09] 2025-10-12 20:33:03,954 | INFO     | architecture information:
[2025-10-12 22:34:09] 2025-10-12 20:33:03,955 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:34:09] 2025-10-12 20:33:04,168 | INFO     | cat /etc/os-release:
[2025-10-12 22:34:09] NAME="CentOS Linux"
[2025-10-12 22:34:09] VERSION="7 (Core)"
[2025-10-12 22:34:09] ID="centos"
[2025-10-12 22:34:09] ID_LIKE="rhel fedora"
[2025-10-12 22:34:09] VERSION_ID="7"
[2025-10-12 22:34:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:34:09] ANSI_COLOR="0;31"
[2025-10-12 22:34:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:34:09] HOME_URL="https://www.centos.org/"
[2025-10-12 22:34:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:34:09] 
[2025-10-12 22:34:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:34:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:34:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:34:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:34:09] 
[2025-10-12 22:34:09] 2025-10-12 20:33:04,168 | INFO     | ***************************************
[2025-10-12 22:34:09] 2025-10-12 20:33:04,670 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-12 22:34:09] 2025-10-12 20:33:04,857 | INFO     | sufficient remaining disk space (495020146688 B)
[2025-10-12 22:34:09] 2025-10-12 20:33:04,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:34:09] 2025-10-12 20:33:04,857 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:34:09] 2025-10-12 20:33:04,857 | INFO     | update_server=False
[2025-10-12 22:34:09] 2025-10-12 20:33:04,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:34:09] 2025-10-12 20:33:05,208 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:34:09] 2025-10-12 20:33:05,209 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:34:09] 2025-10-12 20:33:05,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:34:09] 2025-10-12 20:33:05,209 | INFO     | will abort loop
[2025-10-12 22:34:09] 2025-10-12 20:33:05,542 | INFO     | all data control threads have been joined
[2025-10-12 22:34:09] 2025-10-12 20:33:05,757 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:34:09] 2025-10-12 20:33:05,863 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:05,910 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:06,214 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:06,262 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:06,281 | INFO     | all payload control threads have been joined
[2025-10-12 22:34:09] 2025-10-12 20:33:06,308 | INFO     | all job control threads have been joined
[2025-10-12 22:34:09] 2025-10-12 20:33:06,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:34:09] 2025-10-12 20:33:06,548 | INFO     | [data] control thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:06,733 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:06,756 | INFO     | [job] validate thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:06,891 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:07,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:34:09] 2025-10-12 20:33:07,240 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:07,287 | INFO     | [payload] control thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:07,317 | INFO     | [job] control thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:07,347 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:07,432 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:07,764 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:11,150 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:15,052 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:34:09] 2025-10-12 20:33:16,058 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:34:09] 2025-10-12 20:33:34,009 | INFO     | PID=17337 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:34:09] 2025-10-12 20:33:34,009 | INFO     | .. there are 9 such processes running
[2025-10-12 22:34:09] 2025-10-12 20:33:34,009 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:34:09] 2025-10-12 20:33:34,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:34:09] 2025-10-12 20:33:34,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:34:09] 2025-10-12 20:33:59,373 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:34:09] 2025-10-12 20:34:00,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856355432256)>', '<ExcThread(monitor, started 139855921137408)>']
[2025-10-12 22:34:09] 2025-10-12 20:34:01,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:34:09] 2025-10-12 20:34:01,169 | INFO     | [monitor] control thread has ended
[2025-10-12 22:34:09] 2025-10-12 20:34:05,758 | INFO     | all workflow threads have been joined
[2025-10-12 22:34:09] 2025-10-12 20:34:05,759 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:34:09] 2025-10-12 20:34:05,759 | INFO     | traces error code: 0
[2025-10-12 22:34:09] 2025-10-12 20:34:05,759 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:34:09] 2025-10-12 20:34:06,099 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:34:09] 2025-10-12 20:34:06,189 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:34:09] 2025-10-12 20:34:06,279 [wrapper] pilotpid: 17337
[2025-10-12 22:34:09] 2025-10-12 20:34:06,432 [wrapper] Pilot exit status: 0
[2025-10-12 22:34:09] 2025-10-12 20:34:06,884 [wrapper] pandaids: 6838850535
[2025-10-12 22:34:09] 2025-10-12 20:34:07,982 [wrapper] cleanup supervisor_pilot 15569 17338
[2025-10-12 22:34:09] 2025-10-12 20:34:08,080 [wrapper] Test setup, not cleaning
[2025-10-12 22:34:09] 2025-10-12 20:34:08,128 [wrapper] apfmon messages muted
[2025-10-12 22:34:09] 2025-10-12 20:34:08,270 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:34:09] 2025-10-12 20:34:08,360 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:34:09]  *** Error codes and diagnostics ***
[2025-10-12 22:34:09]     "exeErrorCode": 0,
[2025-10-12 22:34:09]     "exeErrorDiag": "",
[2025-10-12 22:34:09]     "pilotErrorCode": 0,
[2025-10-12 22:34:09]     "pilotErrorDiag": "",
[2025-10-12 22:34:09]  *** Listing of results directory ***
[2025-10-12 22:34:09] total 420484
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc      5112 Oct 11 21:01 queuedata.json
[2025-10-12 22:34:09] -rwx------. 1 boinc boinc     36292 Oct 11 21:02 runpilot2-wrapper.sh
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc    557409 Oct 11 21:02 pilot3.tar.gz
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc       100 Oct 12 18:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:34:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 18:35 run_atlas
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc       105 Oct 12 18:35 job.xml
[2025-10-12 22:34:09] -rw-r--r--. 2 boinc boinc 221020919 Oct 12 18:35 EVNT.46676267._002540.pool.root.1
[2025-10-12 22:34:09] -rw-r--r--. 2 boinc boinc    569679 Oct 12 18:35 input.tar.gz
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc      6390 Oct 12 18:35 init_data.xml
[2025-10-12 22:34:09] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:35 start_atlas.sh
[2025-10-12 22:34:09] drwxrwx--x. 2 boinc boinc        68 Oct 12 18:35 shared
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc         0 Oct 12 18:35 boinc_lockfile
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc      2550 Oct 12 18:35 pandaJob.out
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc    975528 Oct 12 18:39 agis_schedconf.cvmfs.json
[2025-10-12 22:34:09] drwx------. 5 boinc boinc      4096 Oct 12 18:39 pilot3
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc 201032546 Oct 12 22:30 HITS.46676269._063211.pool.root.1
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc       530 Oct 12 22:30 boinc_task_state.xml
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc      1017 Oct 12 22:31 memory_monitor_summary.json
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc   1560580 Oct 12 22:31 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc    444015 Oct 12 22:31 log.46676269._063211.job.log.tgz.1
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc        95 Oct 12 22:32 pilot_heartbeat.json
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc      7779 Oct 12 22:33 heartbeat.json
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc      8192 Oct 12 22:33 boinc_mmap_file
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc        28 Oct 12 22:33 wrapper_checkpoint.txt
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc      5142 Oct 12 22:34 pilotlog.txt
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc   1871529 Oct 12 22:34 log.46676269._063211.job.log.1
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc       357 Oct 12 22:34 output.list
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc       620 Oct 12 22:34 runtime_log
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc   2334720 Oct 12 22:34 result.tar.gz
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc      8703 Oct 12 22:34 runtime_log.err
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc       657 Oct 12 22:34 OKpLDm91tR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmePSMDmyFsnQm.diag
[2025-10-12 22:34:09] -rw-r--r--. 1 boinc boinc     20787 Oct 12 22:34 stderr.txt
[2025-10-12 22:34:09] HITS file was successfully produced:
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc 201032546 Oct 12 22:30 shared/HITS.pool.root.1
[2025-10-12 22:34:09]  *** Contents of shared directory: ***
[2025-10-12 22:34:09] total 415024
[2025-10-12 22:34:09] -rw-r--r--. 2 boinc boinc 221020919 Oct 12 18:35 ATLAS.root_0
[2025-10-12 22:34:09] -rw-r--r--. 2 boinc boinc    569679 Oct 12 18:35 input.tar.gz
[2025-10-12 22:34:09] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:35 start_atlas.sh
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc 201032546 Oct 12 22:30 HITS.pool.root.1
[2025-10-12 22:34:09] -rw-------. 1 boinc boinc   2334720 Oct 12 22:34 result.tar.gz
22:34:10 (13555): run_atlas exited; CPU time 51832.826788
22:34:10 (13555): called boinc_finish(0)

</stderr_txt>
]]>

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