Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:30:19 (29072): wrapper (7.7.26015): starting
08:30:19 (29072): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:30:19] Arguments: --nthreads 12
[2025-10-12 08:30:19] Threads: 12
[2025-10-12 08:30:19] Checking for CVMFS
[2025-10-12 08:30:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:30:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:30:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:30:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:30:19] 2.11.2.0 6893 52797 86288 151620 0 58 12378371 20275201 1 130560 0 29353695 99.955 2507693 27877 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:30:19] CVMFS is ok
[2025-10-12 08:30:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:30:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:30:19] Further information can be found at the LHC@home message board.
[2025-10-12 08:30:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:30:19] Checking for apptainer binary...
[2025-10-12 08:30:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:30:19] Running /usr/bin/apptainer --version
[2025-10-12 08:30:19] apptainer version 1.3.2-1.el7
[2025-10-12 08:30:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:30:20] c-205-3.aglt2.org
[2025-10-12 08:30:20] apptainer works
[2025-10-12 08:30:20] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:30:20] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:30:21] Starting ATLAS job with PandaID=6839475016
[2025-10-12 08:30:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:43:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:43:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839475016/log.46676269._071774.job.log.tgz.1
[2025-10-12 09:43:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/bc/log.46676269._071774.job.log.tgz.1
[2025-10-12 09:43:48]  workdir=None
[2025-10-12 09:43:48] ]
[2025-10-12 09:43:48] 2025-10-12 13:42:59,710 | INFO     | transferring file log.46676269._071774.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839475016/log.46676269._071774.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 09:43:48] 2025-10-12 13:42:59,710 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839475016/log.46676269._071774.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._071774.job
[2025-10-12 09:43:48] 2025-10-12 13:42:59,733 | INFO     | adding to output.list: log.46676269._071774.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/bc/log.46676269._071774.job.log.tg
[2025-10-12 09:43:48] 2025-10-12 13:42:59,734 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 09:43:48] 2025-10-12 13:42:59,735 | INFO     | summary of transferred files:
[2025-10-12 09:43:48] 2025-10-12 13:42:59,735 | INFO     |  -- lfn=log.46676269._071774.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 09:43:48] 2025-10-12 13:42:59,735 | INFO     | stage-out finished correctly
[2025-10-12 09:43:48] 2025-10-12 13:43:00,464 | INFO     | time since job start (4344s) is within the limit (172800.0s)
[2025-10-12 09:43:48] 2025-10-12 13:43:01,643 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:43:48] 2025-10-12 13:43:02,357 | WARNING  | process 6828 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 09:43:48] 2025-10-12 13:43:02,357 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839475016/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:43:48] 2025-10-12 13:43:02,443 | INFO     | number of running child processes to parent process 6828: 1
[2025-10-12 09:43:48] 2025-10-12 13:43:02,443 | INFO     | maximum number of monitored processes: 6
[2025-10-12 09:43:48] 2025-10-12 13:43:02,466 | INFO     | time since job start (4346s) is within the limit (172800.0s)
[2025-10-12 09:43:48] 2025-10-12 13:43:02,953 | INFO     | job 6839475016 has state=finished
[2025-10-12 09:43:48] 2025-10-12 13:43:02,953 | INFO     | preparing for final server update for job 6839475016 in state='finished'
[2025-10-12 09:43:48] 2025-10-12 13:43:02,953 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:43:48] 2025-10-12 13:43:02,954 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:43:48] 2025-10-12 13:43:02,954 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:43:48] 2025-10-12 13:43:02,954 | INFO     | job 6839475016 has finished - writing final server update
[2025-10-12 09:43:48] 2025-10-12 13:43:02,954 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:43:48] 2025-10-12 13:43:02,955 | INFO     | executing command: lscpu
[2025-10-12 09:43:48] 2025-10-12 13:43:02,983 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:43:48] 2025-10-12 13:43:04,471 | INFO     | time since job start (4348s) is within the limit (172800.0s)
[2025-10-12 09:43:48] 2025-10-12 13:43:04,946 | INFO     | monitor loop #324: job 0:6839475016 is in state 'finished'
[2025-10-12 09:43:48] 2025-10-12 13:43:04,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:43:48] 2025-10-12 13:43:05,592 | INFO     | PID=32746 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 09:43:48] 2025-10-12 13:43:06,593 | INFO     | time since job start (4350s) is within the limit (172800.0s)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,449 | INFO     | monitor loop #325: job 0:6839475016 is in state 'finished'
[2025-10-12 09:43:48] 2025-10-12 13:43:07,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,726 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 09:43:48] 2025-10-12 13:43:07,730 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,732 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839475016/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,733 | INFO     | extracted standard info from prmon json
[2025-10-12 09:43:48] 2025-10-12 13:43:07,733 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:43:48] 2025-10-12 13:43:07,733 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:43:48] 2025-10-12 13:43:07,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:43:48] 2025-10-12 13:43:07,734 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:43:48] 2025-10-12 13:43:07,735 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:43:48] 2025-10-12 13:43:07,735 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,736 | INFO     | sum of deviations: -7630089413.0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,736 | INFO     | mean x: 1760274491.5
[2025-10-12 09:43:48] 2025-10-12 13:43:07,736 | INFO     | mean y: 2850147.03125
[2025-10-12 09:43:48] 2025-10-12 13:43:07,736 | INFO     | -- intersect: 165274255013.38364
[2025-10-12 09:43:48] 2025-10-12 13:43:07,736 | INFO     | intersect: 165274255013.38364
[2025-10-12 09:43:48] 2025-10-12 13:43:07,736 | INFO     | chi2: 0.06291126495481404
[2025-10-12 09:43:48] 2025-10-12 13:43:07,737 | INFO     | -- intersect: 165274255013.38364
[2025-10-12 09:43:48] 2025-10-12 13:43:07,737 | INFO     | current memory leak: -93.89 B/s (using 64 data points, chi2=0.06)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,737 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,737 | INFO     | ..............................
[2025-10-12 09:43:48] 2025-10-12 13:43:07,737 | INFO     | . Timing measurements:
[2025-10-12 09:43:48] 2025-10-12 13:43:07,737 | INFO     | . get job = 0 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,737 | INFO     | . initial setup = 2 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,738 | INFO     | . payload setup = 7 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,738 | INFO     | . stage-in = 0 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,738 | INFO     | . payload execution = 4314 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,738 | INFO     | . stage-out = 0 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,738 | INFO     | . log creation = 0 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,738 | INFO     | ..............................
[2025-10-12 09:43:48] 2025-10-12 13:43:07,940 | INFO     | 
[2025-10-12 09:43:48] 2025-10-12 13:43:07,941 | INFO     | job summary report
[2025-10-12 09:43:48] 2025-10-12 13:43:07,941 | INFO     | --------------------------------------------------
[2025-10-12 09:43:48] 2025-10-12 13:43:07,941 | INFO     | PanDA job id: 6839475016
[2025-10-12 09:43:48] 2025-10-12 13:43:07,941 | INFO     | task id: 46676269
[2025-10-12 09:43:48] 2025-10-12 13:43:07,941 | INFO     | errors: (none)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,941 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | pilot state: finished 
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | transexitcode: 0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | exeerrorcode: 0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | exeerrordiag: 
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | exitcode: 0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | exitmsg: OK
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | cpuconsumptiontime: 46306 s
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | nevents: 400
[2025-10-12 09:43:48] 2025-10-12 13:43:07,942 | INFO     | neventsw: 0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | pid: 6828
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | pgrp: 6828
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | corecount: 12
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | event service: False
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | sizes: {0: 2348027, 1: 2348883, 6: 2349145, 12: 2349173, 4325: 2375219, 4327: 2384217, 4329: 2384401, 4335: 2384595}
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | --------------------------------------------------
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | 
[2025-10-12 09:43:48] 2025-10-12 13:43:07,943 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 09:43:48] 2025-10-12 13:43:07,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,966 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,966 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:43:48] 2025-10-12 13:43:07,970 | INFO     | job 6839475016 has completed (purged errors)
[2025-10-12 09:43:48] 2025-10-12 13:43:07,970 | INFO     | overall cleanup function is called
[2025-10-12 09:43:48] 2025-10-12 13:43:08,978 | INFO     | --- collectZombieJob: --- 10, [6828]
[2025-10-12 09:43:48] 2025-10-12 13:43:08,978 | INFO     | zombie collector waiting for pid 6828
[2025-10-12 09:43:48] 2025-10-12 13:43:08,978 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:43:48] 2025-10-12 13:43:08,978 | INFO     | collected zombie processes
[2025-10-12 09:43:48] 2025-10-12 13:43:08,979 | INFO     | will attempt to kill all subprocesses of pid=6828
[2025-10-12 09:43:48] 2025-10-12 13:43:09,067 | INFO     | process IDs to be killed: [6828] (in reverse order)
[2025-10-12 09:43:48] 2025-10-12 13:43:09,120 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:43:48] 2025-10-12 13:43:09,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:43:48] 2025-10-12 13:43:09,123 | INFO     | did not find any defunct processes belonging to 6828
[2025-10-12 09:43:48] 2025-10-12 13:43:09,126 | INFO     | did not find any defunct processes belonging to 6828
[2025-10-12 09:43:48] 2025-10-12 13:43:09,126 | INFO     | ready for new job
[2025-10-12 09:43:48] 2025-10-12 13:43:09,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:43:48] 2025-10-12 13:43:09,128 | INFO     | ***************************************
[2025-10-12 09:43:48] 2025-10-12 13:43:09,128 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:43:48] 2025-10-12 13:43:09,128 | INFO     | ***************************************
[2025-10-12 09:43:48] 2025-10-12 13:43:09,128 | INFO     | 
[2025-10-12 09:43:48] 2025-10-12 13:43:09,129 | INFO     | architecture information:
[2025-10-12 09:43:48] 2025-10-12 13:43:09,129 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:43:48] 2025-10-12 13:43:09,145 | INFO     | cat /etc/os-release:
[2025-10-12 09:43:48] NAME="CentOS Linux"
[2025-10-12 09:43:48] VERSION="7 (Core)"
[2025-10-12 09:43:48] ID="centos"
[2025-10-12 09:43:48] ID_LIKE="rhel fedora"
[2025-10-12 09:43:48] VERSION_ID="7"
[2025-10-12 09:43:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:43:48] ANSI_COLOR="0;31"
[2025-10-12 09:43:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:43:48] HOME_URL="https://www.centos.org/"
[2025-10-12 09:43:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:43:48] 
[2025-10-12 09:43:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:43:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:43:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:43:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:43:48] 
[2025-10-12 09:43:48] 2025-10-12 13:43:09,145 | INFO     | ***************************************
[2025-10-12 09:43:48] 2025-10-12 13:43:09,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 09:43:48] 2025-10-12 13:43:09,665 | INFO     | sufficient remaining disk space (29493297152 B)
[2025-10-12 09:43:48] 2025-10-12 13:43:09,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:43:48] 2025-10-12 13:43:09,666 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:43:48] 2025-10-12 13:43:09,666 | INFO     | update_server=False
[2025-10-12 09:43:48] 2025-10-12 13:43:09,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:43:48] 2025-10-12 13:43:09,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:43:48] 2025-10-12 13:43:09,952 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 09:43:48] 2025-10-12 13:43:09,952 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 09:43:48] 2025-10-12 13:43:09,952 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:43:48] 2025-10-12 13:43:09,952 | INFO     | will abort loop
[2025-10-12 09:43:48] 2025-10-12 13:43:10,157 | INFO     | all data control threads have been joined
[2025-10-12 09:43:48] 2025-10-12 13:43:10,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:43:48] 2025-10-12 13:43:10,419 | INFO     | all payload control threads have been joined
[2025-10-12 09:43:48] 2025-10-12 13:43:10,671 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:10,672 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:10,763 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:10,810 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:10,870 | INFO     | all job control threads have been joined
[2025-10-12 09:43:48] 2025-10-12 13:43:10,958 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:11,161 | INFO     | [data] control thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:11,224 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:11,281 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:11,425 | INFO     | [payload] control thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:11,831 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:11,876 | INFO     | [job] control thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:12,166 | INFO     | [job] validate thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:12,167 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:12,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:43:48] 2025-10-12 13:43:12,337 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:16,243 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:19,888 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:43:48] 2025-10-12 13:43:20,892 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:43:48] 2025-10-12 13:43:39,795 | INFO     | PID=32746 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 09:43:48] 2025-10-12 13:43:39,796 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:43:48] 2025-10-12 13:43:39,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:43:48] 2025-10-12 13:43:39,796 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:43:48] 2025-10-12 13:43:42,664 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:43:48] 2025-10-12 13:43:43,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239582775104)>', '<ExcThread(monitor, started 140238869493504)>']
[2025-10-12 09:43:48] 2025-10-12 13:43:43,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:43:48] 2025-10-12 13:43:43,816 | INFO     | [monitor] control thread has ended
[2025-10-12 09:43:48] 2025-10-12 13:43:48,154 | INFO     | all workflow threads have been joined
[2025-10-12 09:43:48] 2025-10-12 13:43:48,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:43:48] 2025-10-12 13:43:48,154 | INFO     | traces error code: 0
[2025-10-12 09:43:48] 2025-10-12 13:43:48,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:43:48] 2025-10-12 13:43:48,248 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:43:48] 2025-10-12 13:43:48,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:43:48] 2025-10-12 13:43:48,256 [wrapper] pilotpid: 32746
[2025-10-12 09:43:48] 2025-10-12 13:43:48,260 [wrapper] Pilot exit status: 0
[2025-10-12 09:43:48] 2025-10-12 13:43:48,275 [wrapper] pandaids: 6839475016
[2025-10-12 09:43:48] 2025-10-12 13:43:48,315 [wrapper] cleanup supervisor_pilot 20727 32747
[2025-10-12 09:43:48] 2025-10-12 13:43:48,319 [wrapper] Test setup, not cleaning
[2025-10-12 09:43:48] 2025-10-12 13:43:48,323 [wrapper] apfmon messages muted
[2025-10-12 09:43:48] 2025-10-12 13:43:48,327 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:43:48] 2025-10-12 13:43:48,331 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:43:48]  *** Error codes and diagnostics ***
[2025-10-12 09:43:48]     "exeErrorCode": 0,
[2025-10-12 09:43:48]     "exeErrorDiag": "",
[2025-10-12 09:43:48]     "pilotErrorCode": 0,
[2025-10-12 09:43:48]     "pilotErrorDiag": "",
[2025-10-12 09:43:48]  *** Listing of results directory ***
[2025-10-12 09:43:48] total 409184
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 00:38 pilot3.tar.gz
[2025-10-12 09:43:48] -rwx------ 1 boincer umatlas     36292 Oct 12 01:20 runpilot2-wrapper.sh
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 01:20 queuedata.json
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas       100 Oct 12 08:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:43:48] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 08:30 run_atlas
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas       105 Oct 12 08:30 job.xml
[2025-10-12 09:43:48] -rw-r--r-- 2 boincer umatlas 220534939 Oct 12 08:30 EVNT.46676267._004316.pool.root.1
[2025-10-12 09:43:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:30 start_atlas.sh
[2025-10-12 09:43:48] drwxrwx--x 2 boincer umatlas      4096 Oct 12 08:30 shared
[2025-10-12 09:43:48] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 08:30 input.tar.gz
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas         0 Oct 12 08:30 boinc_lockfile
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 08:30 pandaJob.out
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas    975512 Oct 12 08:30 agis_schedconf.cvmfs.json
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas   1560580 Oct 12 08:30 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:43:48] drwx------ 5 boincer umatlas      4096 Oct 12 08:30 pilot3
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 09:38 init_data.xml
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas 192565160 Oct 12 09:42 HITS.46676269._071774.pool.root.1
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas       529 Oct 12 09:42 boinc_task_state.xml
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas      1049 Oct 12 09:42 memory_monitor_summary.json
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas    367919 Oct 12 09:42 log.46676269._071774.job.log.tgz.1
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas      7856 Oct 12 09:43 heartbeat.json
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas        27 Oct 12 09:43 wrapper_checkpoint.txt
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 09:43 boinc_mmap_file
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas        95 Oct 12 09:43 pilot_heartbeat.json
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas      5004 Oct 12 09:43 pilotlog.txt
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas    632047 Oct 12 09:43 log.46676269._071774.job.log.1
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas       357 Oct 12 09:43 output.list
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas       620 Oct 12 09:43 runtime_log
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas   1024000 Oct 12 09:43 result.tar.gz
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas       658 Oct 12 09:43 UtTMDmxg3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdiiNDmlZ7oNo.diag
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 09:43 runtime_log.err
[2025-10-12 09:43:48] -rw-r--r-- 1 boincer umatlas     22321 Oct 12 09:43 stderr.txt
[2025-10-12 09:43:48] HITS file was successfully produced:
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas 192565160 Oct 12 09:42 shared/HITS.pool.root.1
[2025-10-12 09:43:48]  *** Contents of shared directory: ***
[2025-10-12 09:43:48] total 405000
[2025-10-12 09:43:48] -rw-r--r-- 2 boincer umatlas 220534939 Oct 12 08:30 ATLAS.root_0
[2025-10-12 09:43:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:30 start_atlas.sh
[2025-10-12 09:43:48] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 08:30 input.tar.gz
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas 192565160 Oct 12 09:42 HITS.pool.root.1
[2025-10-12 09:43:48] -rw------- 1 boincer umatlas   1024000 Oct 12 09:43 result.tar.gz
09:43:50 (29072): run_atlas exited; CPU time 46280.687906
09:43:50 (29072): called boinc_finish(0)

</stderr_txt>
]]>

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