Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
16:22:56 (3493): wrapper (7.7.26015): starting
16:22:56 (3493): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:22:56] Arguments: --nthreads 8
[2025-10-12 16:22:56] Threads: 8
[2025-10-12 16:22:56] Checking for CVMFS
[2025-10-12 16:22:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:22:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:22:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:22:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:22:57] 2.11.0.0 4264 606 53928 151623 3 56 1793767 4096001 5502 130560 0 299724 97.823 690027 926 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 16:22:57] CVMFS is ok
[2025-10-12 16:22:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:22:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:22:57] Further information can be found at the LHC@home message board.
[2025-10-12 16:22:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:22:57] Checking for apptainer binary...
[2025-10-12 16:22:57] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 16:22:57] apptainer is not installed, using version from CVMFS
[2025-10-12 16:22:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:22:57] WARNING: Environment variable TMPDIR already has value [/tmp/job_10511704/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node032
[2025-10-12 16:22:57] apptainer works
[2025-10-12 16:22:57] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:22:57] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:22:57] Starting ATLAS job with PandaID=6839164694
[2025-10-12 16:22:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10511704/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:14:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:14:22]  protocol_id=None
[2025-10-12 17:14:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 17:14:22]  replicas=None
[2025-10-12 17:14:22]  scope=mc23_13p6TeV
[2025-10-12 17:14:22]  status=None
[2025-10-12 17:14:22]  status_code=0
[2025-10-12 17:14:22]  storage_token=
[2025-10-12 17:14:22]  surl=/tmp/job_10511704/atlas/pilot/slots/0/PanDA_Pilot-6839164694/log.46676269._068185.job.log.tgz.1
[2025-10-12 17:14:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/a5/log.46676269._068185.job.log.tgz.1
[2025-10-12 17:14:22]  workdir=None
[2025-10-12 17:14:22] ]
[2025-10-12 17:14:22] 2025-10-12 15:13:45,087 | INFO     | transferring file log.46676269._068185.job.log.tgz.1 from /tmp/job_10511704/atlas/pilot/slots/0/PanDA_Pilot-6839164694/log.46676269._068185.job.log.tgz.1 to /tmp/j
[2025-10-12 17:14:22] 2025-10-12 15:13:45,087 | INFO     | executing command: /usr/bin/env mv /tmp/job_10511704/atlas/pilot/slots/0/PanDA_Pilot-6839164694/log.46676269._068185.job.log.tgz.1 /tmp/job_10511704/atlas/pilot/sl
[2025-10-12 17:14:22] 2025-10-12 15:13:45,095 | INFO     | adding to output.list: log.46676269._068185.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/a5/log.46676269._068185.job.log.tg
[2025-10-12 17:14:22] 2025-10-12 15:13:45,095 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:14:22] 2025-10-12 15:13:45,096 | INFO     | summary of transferred files:
[2025-10-12 17:14:22] 2025-10-12 15:13:45,096 | INFO     |  -- lfn=log.46676269._068185.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:14:22] 2025-10-12 15:13:45,096 | INFO     | stage-out finished correctly
[2025-10-12 17:14:22] 2025-10-12 15:13:46,594 | INFO     | time since job start (3044s) is within the limit (172800.0s)
[2025-10-12 17:14:22] 2025-10-12 15:13:47,077 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:14:22] 2025-10-12 15:13:47,556 | INFO     | job 6839164694 has state=finished
[2025-10-12 17:14:22] 2025-10-12 15:13:47,557 | INFO     | preparing for final server update for job 6839164694 in state='finished'
[2025-10-12 17:14:22] 2025-10-12 15:13:47,557 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:14:22] 2025-10-12 15:13:47,557 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:14:22] 2025-10-12 15:13:47,557 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:14:22] 2025-10-12 15:13:47,557 | INFO     | job 6839164694 has finished - writing final server update
[2025-10-12 17:14:22] 2025-10-12 15:13:47,557 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:14:22] 2025-10-12 15:13:47,558 | INFO     | executing command: lscpu
[2025-10-12 17:14:22] 2025-10-12 15:13:47,590 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:14:22] 2025-10-12 15:13:48,599 | INFO     | time since job start (3046s) is within the limit (172800.0s)
[2025-10-12 17:14:22] 2025-10-12 15:13:49,601 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:14:22] 2025-10-12 15:13:49,606 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2771.149796875001
[2025-10-12 17:14:22] 2025-10-12 15:13:49,611 | INFO     | using path: /tmp/job_10511704/atlas/pilot/slots/0/PanDA_Pilot-6839164694/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:14:22] 2025-10-12 15:13:49,611 | INFO     | extracted standard info from prmon json
[2025-10-12 17:14:22] 2025-10-12 15:13:49,612 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:14:22] 2025-10-12 15:13:49,612 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:14:22] 2025-10-12 15:13:49,612 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:14:22] 2025-10-12 15:13:49,612 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | sum of square deviations: 24640462.0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | sum of deviations: 1202409369.0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | mean x: 1760280587.0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | mean y: 2875264.7674418604
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | -- intersect: -85895590026.89874
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | intersect: -85895590026.89874
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | chi2: 0.024529263410779836
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | -- intersect: -85895590026.89874
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | current memory leak: 48.80 B/s (using 43 data points, chi2=0.02)
[2025-10-12 17:14:22] 2025-10-12 15:13:49,613 | INFO     | could have reported an average CPU frequency of 3010 MHz (5 samples)
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | ..............................
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . Timing measurements:
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . get job = 0 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . initial setup = 1 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . payload setup = 2 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . stage-in = 0 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . payload execution = 3023 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . stage-out = 0 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | . log creation = 0 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,614 | INFO     | ..............................
[2025-10-12 17:14:22] 2025-10-12 15:13:49,982 | INFO     | 
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | job summary report
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | --------------------------------------------------
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | PanDA job id: 6839164694
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | task id: 46676269
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | errors: (none)
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | pilot state: finished 
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | transexitcode: 0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | exeerrorcode: 0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | exeerrordiag: 
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | exitcode: 0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | exitmsg: OK
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | cpuconsumptiontime: 20818 s
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | nevents: 400
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | neventsw: 0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | pid: 17145
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | pgrp: 17145
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | corecount: 8
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | event service: False
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | sizes: {0: 2348983, 2: 2349245, 11: 2349273, 3029: 2383826, 3031: 2383826, 3034: 2384052}
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | --------------------------------------------------
[2025-10-12 17:14:22] 2025-10-12 15:13:49,983 | INFO     | 
[2025-10-12 17:14:22] 2025-10-12 15:13:49,984 | INFO     | executing command: ls -lF /tmp/job_10511704/atlas/pilot/slots/0
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,995 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | job 6839164694 has completed (purged errors)
[2025-10-12 17:14:22] 2025-10-12 15:13:49,996 | INFO     | overall cleanup function is called
[2025-10-12 17:14:22] 2025-10-12 15:13:50,942 | WARNING  | process 17145 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:14:22] 2025-10-12 15:13:51,002 | INFO     | --- collectZombieJob: --- 10, [17145]
[2025-10-12 17:14:22] 2025-10-12 15:13:51,002 | INFO     | zombie collector waiting for pid 17145
[2025-10-12 17:14:22] 2025-10-12 15:13:51,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:14:22] 2025-10-12 15:13:51,002 | INFO     | collected zombie processes
[2025-10-12 17:14:22] 2025-10-12 15:13:51,002 | INFO     | will attempt to kill all subprocesses of pid=17145
[2025-10-12 17:14:22] 2025-10-12 15:13:51,099 | INFO     | using path: /tmp/job_10511704/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:14:22] 2025-10-12 15:13:51,336 | INFO     | process IDs to be killed: [17145] (in reverse order)
[2025-10-12 17:14:22] 2025-10-12 15:13:51,372 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:14:22] 2025-10-12 15:13:51,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:14:22] 2025-10-12 15:13:51,372 | INFO     | number of running child processes to parent process 17145: 1
[2025-10-12 17:14:22] 2025-10-12 15:13:51,372 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:14:22] 2025-10-12 15:13:51,373 | INFO     | aborting job monitoring since job object (job id=6839164694) has expired
[2025-10-12 17:14:22] 2025-10-12 15:13:51,376 | INFO     | did not find any defunct processes belonging to 17145
[2025-10-12 17:14:22] 2025-10-12 15:13:51,379 | INFO     | did not find any defunct processes belonging to 17145
[2025-10-12 17:14:22] 2025-10-12 15:13:51,379 | INFO     | ready for new job
[2025-10-12 17:14:22] 2025-10-12 15:13:51,379 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:14:22] 2025-10-12 15:13:51,380 | INFO     | ***************************************
[2025-10-12 17:14:22] 2025-10-12 15:13:51,380 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:14:22] 2025-10-12 15:13:51,380 | INFO     | ***************************************
[2025-10-12 17:14:22] 2025-10-12 15:13:51,380 | INFO     | 
[2025-10-12 17:14:22] 2025-10-12 15:13:51,395 | INFO     | architecture information:
[2025-10-12 17:14:22] 2025-10-12 15:13:51,395 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:14:22] 2025-10-12 15:13:51,400 | INFO     | cat /etc/os-release:
[2025-10-12 17:14:22] NAME="CentOS Linux"
[2025-10-12 17:14:22] VERSION="7 (Core)"
[2025-10-12 17:14:22] ID="centos"
[2025-10-12 17:14:22] ID_LIKE="rhel fedora"
[2025-10-12 17:14:22] VERSION_ID="7"
[2025-10-12 17:14:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:14:22] ANSI_COLOR="0;31"
[2025-10-12 17:14:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:14:22] HOME_URL="https://www.centos.org/"
[2025-10-12 17:14:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:14:22] 
[2025-10-12 17:14:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:14:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:14:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:14:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:14:22] 
[2025-10-12 17:14:22] 2025-10-12 15:13:51,401 | INFO     | ***************************************
[2025-10-12 17:14:22] 2025-10-12 15:13:51,903 | INFO     | executing command: df -mP /tmp/job_10511704/atlas/pilot/slots/0
[2025-10-12 17:14:22] 2025-10-12 15:13:51,909 | INFO     | sufficient remaining disk space (228700717056 B)
[2025-10-12 17:14:22] 2025-10-12 15:13:51,909 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:14:22] 2025-10-12 15:13:51,909 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:14:22] 2025-10-12 15:13:51,909 | INFO     | update_server=False
[2025-10-12 17:14:22] 2025-10-12 15:13:51,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:14:22] 2025-10-12 15:13:51,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:14:22] 2025-10-12 15:13:51,909 | INFO     | will abort loop
[2025-10-12 17:14:22] 2025-10-12 15:13:52,475 | INFO     | all payload control threads have been joined
[2025-10-12 17:14:22] 2025-10-12 15:13:52,706 | INFO     | all data control threads have been joined
[2025-10-12 17:14:22] 2025-10-12 15:13:52,914 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:52,915 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:53,104 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:53,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:14:22] 2025-10-12 15:13:53,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:14:22] 2025-10-12 15:13:53,361 | INFO     | all job control threads have been joined
[2025-10-12 17:14:22] 2025-10-12 15:13:53,420 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:53,481 | INFO     | [payload] control thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:53,662 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:53,710 | INFO     | [data] control thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:54,154 | INFO     | [job] validate thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:54,251 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:54,251 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:54,367 | INFO     | [job] control thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:54,442 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:54,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:14:22] 2025-10-12 15:13:55,164 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:55,682 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:13:57,146 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:14:02,398 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:14:22] 2025-10-12 15:14:03,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:14:22] 2025-10-12 15:14:07,130 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:14:22] 2025-10-12 15:14:08,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056264448)>']
[2025-10-12 17:14:22] 2025-10-12 15:14:13,755 | INFO     | all workflow threads have been joined
[2025-10-12 17:14:22] 2025-10-12 15:14:13,756 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:14:22] 2025-10-12 15:14:13,756 | INFO     | traces error code: 0
[2025-10-12 17:14:22] 2025-10-12 15:14:13,756 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:14:22] 2025-10-12 15:14:22,343 | INFO     | PID=8502 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 17:14:22] 2025-10-12 15:14:22,343 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:14:22] 2025-10-12 15:14:22,343 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:14:22] 2025-10-12 15:14:22,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:14:22] 2025-10-12 15:14:22,343 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:14:22] 2025-10-12 15:14:22,343 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 17:14:22] 2025-10-12 15:14:22,343 | INFO     | [monitor] control thread has ended
[2025-10-12 17:14:22] 2025-10-12 15:14:22,435 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:14:22] 2025-10-12 15:14:22,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:14:22] 2025-10-12 15:14:22,437 [wrapper] pilotpid: 8502
[2025-10-12 17:14:22] 2025-10-12 15:14:22,438 [wrapper] Pilot exit status: 0
[2025-10-12 17:14:22] 2025-10-12 15:14:22,443 [wrapper] pandaids: 6839164694
[2025-10-12 17:14:22] 2025-10-12 15:14:22,469 [wrapper] cleanup supervisor_pilot 11593 8503
[2025-10-12 17:14:22] 2025-10-12 15:14:22,470 [wrapper] Test setup, not cleaning
[2025-10-12 17:14:22] 2025-10-12 15:14:22,471 [wrapper] apfmon messages muted
[2025-10-12 17:14:22] 2025-10-12 15:14:22,472 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:14:22] 2025-10-12 15:14:22,473 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:14:22]  *** Error codes and diagnostics ***
[2025-10-12 17:14:22]     "exeErrorCode": 0,
[2025-10-12 17:14:22]     "exeErrorDiag": "",
[2025-10-12 17:14:22]     "pilotErrorCode": 0,
[2025-10-12 17:14:22]     "pilotErrorDiag": "",
[2025-10-12 17:14:22]  *** Listing of results directory ***
[2025-10-12 17:14:22] total 411172
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user    557409 Oct 12 03:02 pilot3.tar.gz
[2025-10-12 17:14:22] -rwx------ 1 mf493845 unix-user     36292 Oct 12 03:17 runpilot2-wrapper.sh
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user      5112 Oct 12 03:17 queuedata.json
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user       100 Oct 12 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:14:22] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 15:27 run_atlas
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user       105 Oct 12 15:27 job.xml
[2025-10-12 17:14:22] -rw-r--r-- 2 mf493845 unix-user 219061274 Oct 12 16:22 EVNT.46676267._003124.pool.root.1
[2025-10-12 17:14:22] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 16:22 start_atlas.sh
[2025-10-12 17:14:22] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 16:22 shared
[2025-10-12 17:14:22] -rw-r--r-- 2 mf493845 unix-user    569674 Oct 12 16:22 input.tar.gz
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user      6393 Oct 12 16:22 init_data.xml
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user         0 Oct 12 16:22 boinc_setup_complete
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user      8192 Oct 12 16:22 boinc_mmap_file
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user         0 Oct 12 16:22 boinc_lockfile
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user      2550 Oct 12 16:22 pandaJob.out
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user    975528 Oct 12 16:23 agis_schedconf.cvmfs.json
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user   1560580 Oct 12 16:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:14:22] drwx------ 5 mf493845 unix-user       440 Oct 12 16:23 pilot3
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user 196543345 Oct 12 17:13 HITS.46676269._068185.pool.root.1
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user      1033 Oct 12 17:13 memory_monitor_summary.json
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user        95 Oct 12 17:13 pilot_heartbeat.json
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user    300675 Oct 12 17:13 log.46676269._068185.job.log.tgz.1
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user      7780 Oct 12 17:13 heartbeat.json
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user       814 Oct 12 17:14 pilotlog.txt
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user    480481 Oct 12 17:14 log.46676269._068185.job.log.1
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user       357 Oct 12 17:14 output.list
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user       620 Oct 12 17:14 runtime_log
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user    798720 Oct 12 17:14 result.tar.gz
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user      9076 Oct 12 17:14 runtime_log.err
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user       644 Oct 12 17:14 p8NKDm8szR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmt9hNDm7LnGGm.diag
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user     22206 Oct 12 17:14 stderr.txt
[2025-10-12 17:14:22] HITS file was successfully produced:
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user 196543345 Oct 12 17:13 shared/HITS.pool.root.1
[2025-10-12 17:14:22]  *** Contents of shared directory: ***
[2025-10-12 17:14:22] total 407224
[2025-10-12 17:14:22] -rw-r--r-- 2 mf493845 unix-user 219061274 Oct 12 16:22 ATLAS.root_0
[2025-10-12 17:14:22] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 16:22 start_atlas.sh
[2025-10-12 17:14:22] -rw-r--r-- 2 mf493845 unix-user    569674 Oct 12 16:22 input.tar.gz
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user 196543345 Oct 12 17:13 HITS.pool.root.1
[2025-10-12 17:14:22] -rw------- 1 mf493845 unix-user    798720 Oct 12 17:14 result.tar.gz
17:14:24 (3493): run_atlas exited; CPU time 20863.805166
17:14:24 (3493): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN