Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:28:18 (26852): wrapper (7.7.26015): starting
08:28:18 (26852): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:28:18] Arguments: --nthreads 12
[2025-10-12 08:28:18] Threads: 12
[2025-10-12 08:28:18] Checking for CVMFS
[2025-10-12 08:28:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:28:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:28:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:28:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:28:18] 2.11.2.0 2924 222835 104028 151620 3 59 15336372 20275200 1 130560 4 109995021 99.984 13796094 12957 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:28:18] CVMFS is ok
[2025-10-12 08:28:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:28:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:28:18] Further information can be found at the LHC@home message board.
[2025-10-12 08:28:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:28:18] Checking for apptainer binary...
[2025-10-12 08:28:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:28:18] Running /usr/bin/apptainer --version
[2025-10-12 08:28:18] apptainer version 1.3.2-1.el7
[2025-10-12 08:28:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:28:20] c-205-28.aglt2.org
[2025-10-12 08:28:20] apptainer works
[2025-10-12 08:28:20] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:28:20] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:28:20] Starting ATLAS job with PandaID=6839660558
[2025-10-12 08:28:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:42:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:42:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 09:42:48]  replicas=None
[2025-10-12 09:42:48]  scope=mc23_13p6TeV
[2025-10-12 09:42:48]  status=None
[2025-10-12 09:42:48]  status_code=0
[2025-10-12 09:42:48]  storage_token=
[2025-10-12 09:42:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839660558/log.46676269._074049.job.log.tgz.1
[2025-10-12 09:42:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/88/log.46676269._074049.job.log.tgz.1
[2025-10-12 09:42:48]  workdir=None
[2025-10-12 09:42:48] ]
[2025-10-12 09:42:48] 2025-10-12 13:41:53,928 | INFO     | transferring file log.46676269._074049.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839660558/log.46676269._074049.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 09:42:48] 2025-10-12 13:41:53,928 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839660558/log.46676269._074049.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._074049.job
[2025-10-12 09:42:48] 2025-10-12 13:41:53,950 | INFO     | adding to output.list: log.46676269._074049.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/88/log.46676269._074049.job.log.tg
[2025-10-12 09:42:48] 2025-10-12 13:41:53,951 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 09:42:48] 2025-10-12 13:41:53,952 | INFO     | summary of transferred files:
[2025-10-12 09:42:48] 2025-10-12 13:41:53,952 | INFO     |  -- lfn=log.46676269._074049.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 09:42:48] 2025-10-12 13:41:53,952 | INFO     | stage-out finished correctly
[2025-10-12 09:42:48] 2025-10-12 13:41:54,108 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:42:48] 2025-10-12 13:41:54,190 | INFO     | job 6839660558 has state=finished
[2025-10-12 09:42:48] 2025-10-12 13:41:54,190 | INFO     | preparing for final server update for job 6839660558 in state='finished'
[2025-10-12 09:42:48] 2025-10-12 13:41:54,191 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:42:48] 2025-10-12 13:41:54,191 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:42:48] 2025-10-12 13:41:54,191 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:42:48] 2025-10-12 13:41:54,191 | INFO     | job 6839660558 has finished - writing final server update
[2025-10-12 09:42:48] 2025-10-12 13:41:54,192 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:42:48] 2025-10-12 13:41:54,193 | INFO     | executing command: lscpu
[2025-10-12 09:42:48] 2025-10-12 13:41:54,216 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:42:48] 2025-10-12 13:41:54,688 | INFO     | time since job start (4399s) is within the limit (172800.0s)
[2025-10-12 09:42:48] 2025-10-12 13:41:55,865 | INFO     | monitor loop #330: job 0:6839660558 is in state 'finished'
[2025-10-12 09:42:48] 2025-10-12 13:41:55,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:42:48] 2025-10-12 13:41:56,694 | INFO     | time since job start (4401s) is within the limit (172800.0s)
[2025-10-12 09:42:48] 2025-10-12 13:41:58,369 | INFO     | monitor loop #331: job 0:6839660558 is in state 'finished'
[2025-10-12 09:42:48] 2025-10-12 13:41:58,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:42:48] 2025-10-12 13:41:58,699 | INFO     | time since job start (4403s) is within the limit (172800.0s)
[2025-10-12 09:42:48] 2025-10-12 13:41:58,908 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 09:42:48] 2025-10-12 13:41:58,912 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 09:42:48] 2025-10-12 13:41:58,914 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839660558/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:42:48] 2025-10-12 13:41:58,915 | INFO     | extracted standard info from prmon json
[2025-10-12 09:42:48] 2025-10-12 13:41:58,915 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:42:48] 2025-10-12 13:41:58,915 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:42:48] 2025-10-12 13:41:58,915 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:42:48] 2025-10-12 13:41:58,915 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:42:48] 2025-10-12 13:41:58,917 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:42:48] 2025-10-12 13:41:58,917 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 09:42:48] 2025-10-12 13:41:58,917 | INFO     | sum of deviations: -7408919699.999999
[2025-10-12 09:42:48] 2025-10-12 13:41:58,918 | INFO     | mean x: 1760274401.0
[2025-10-12 09:42:48] 2025-10-12 13:41:58,918 | INFO     | mean y: 2851118.9076923076
[2025-10-12 09:42:48] 2025-10-12 13:41:58,918 | INFO     | -- intersect: 153189025682.0867
[2025-10-12 09:42:48] 2025-10-12 13:41:58,918 | INFO     | intersect: 153189025682.0867
[2025-10-12 09:42:48] 2025-10-12 13:41:58,918 | INFO     | chi2: 0.0599709490827857
[2025-10-12 09:42:48] 2025-10-12 13:41:58,918 | INFO     | -- intersect: 153189025682.0867
[2025-10-12 09:42:48] 2025-10-12 13:41:58,918 | INFO     | current memory leak: -87.02 B/s (using 65 data points, chi2=0.06)
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | could have reported an average CPU frequency of 2050 MHz (6 samples)
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | ..............................
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | . Timing measurements:
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | . get job = 0 s
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | . initial setup = 2 s
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | . payload setup = 7 s
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | . stage-in = 0 s
[2025-10-12 09:42:48] 2025-10-12 13:41:58,919 | INFO     | . payload execution = 4371 s
[2025-10-12 09:42:48] 2025-10-12 13:41:58,920 | INFO     | . stage-out = 0 s
[2025-10-12 09:42:48] 2025-10-12 13:41:58,920 | INFO     | . log creation = 0 s
[2025-10-12 09:42:48] 2025-10-12 13:41:58,920 | INFO     | ..............................
[2025-10-12 09:42:48] 2025-10-12 13:41:59,003 | INFO     | 
[2025-10-12 09:42:48] 2025-10-12 13:41:59,003 | INFO     | job summary report
[2025-10-12 09:42:48] 2025-10-12 13:41:59,003 | INFO     | --------------------------------------------------
[2025-10-12 09:42:48] 2025-10-12 13:41:59,003 | INFO     | PanDA job id: 6839660558
[2025-10-12 09:42:48] 2025-10-12 13:41:59,004 | INFO     | task id: 46676269
[2025-10-12 09:42:48] 2025-10-12 13:41:59,004 | INFO     | errors: (none)
[2025-10-12 09:42:48] 2025-10-12 13:41:59,004 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:42:48] 2025-10-12 13:41:59,004 | INFO     | pilot state: finished 
[2025-10-12 09:42:48] 2025-10-12 13:41:59,004 | INFO     | transexitcode: 0
[2025-10-12 09:42:48] 2025-10-12 13:41:59,004 | INFO     | exeerrorcode: 0
[2025-10-12 09:42:48] 2025-10-12 13:41:59,005 | INFO     | exeerrordiag: 
[2025-10-12 09:42:48] 2025-10-12 13:41:59,005 | INFO     | exitcode: 0
[2025-10-12 09:42:48] 2025-10-12 13:41:59,005 | INFO     | exitmsg: OK
[2025-10-12 09:42:48] 2025-10-12 13:41:59,005 | INFO     | cpuconsumptiontime: 46098 s
[2025-10-12 09:42:48] 2025-10-12 13:41:59,005 | INFO     | nevents: 400
[2025-10-12 09:42:48] 2025-10-12 13:41:59,005 | INFO     | neventsw: 0
[2025-10-12 09:42:48] 2025-10-12 13:41:59,006 | INFO     | pid: 4725
[2025-10-12 09:42:48] 2025-10-12 13:41:59,006 | INFO     | pgrp: 4725
[2025-10-12 09:42:48] 2025-10-12 13:41:59,006 | INFO     | corecount: 12
[2025-10-12 09:42:48] 2025-10-12 13:41:59,006 | INFO     | event service: False
[2025-10-12 09:42:48] 2025-10-12 13:41:59,006 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 4382: 2375223, 4383: 2384405, 4388: 2384543}
[2025-10-12 09:42:48] 2025-10-12 13:41:59,006 | INFO     | --------------------------------------------------
[2025-10-12 09:42:48] 2025-10-12 13:41:59,006 | INFO     | 
[2025-10-12 09:42:48] 2025-10-12 13:41:59,007 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 09:42:48] 2025-10-12 13:41:59,032 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,033 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:42:48] 2025-10-12 13:41:59,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:42:48] 2025-10-12 13:41:59,036 | INFO     | job 6839660558 has completed (purged errors)
[2025-10-12 09:42:48] 2025-10-12 13:41:59,036 | INFO     | overall cleanup function is called
[2025-10-12 09:42:48] 2025-10-12 13:42:00,044 | INFO     | --- collectZombieJob: --- 10, [4725]
[2025-10-12 09:42:48] 2025-10-12 13:42:00,044 | INFO     | zombie collector waiting for pid 4725
[2025-10-12 09:42:48] 2025-10-12 13:42:00,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:42:48] 2025-10-12 13:42:00,045 | INFO     | collected zombie processes
[2025-10-12 09:42:48] 2025-10-12 13:42:00,045 | INFO     | will attempt to kill all subprocesses of pid=4725
[2025-10-12 09:42:48] 2025-10-12 13:42:00,134 | INFO     | process IDs to be killed: [4725] (in reverse order)
[2025-10-12 09:42:48] 2025-10-12 13:42:00,189 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:42:48] 2025-10-12 13:42:00,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:42:48] 2025-10-12 13:42:00,192 | INFO     | did not find any defunct processes belonging to 4725
[2025-10-12 09:42:48] 2025-10-12 13:42:00,195 | INFO     | did not find any defunct processes belonging to 4725
[2025-10-12 09:42:48] 2025-10-12 13:42:00,195 | INFO     | ready for new job
[2025-10-12 09:42:48] 2025-10-12 13:42:00,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:42:48] 2025-10-12 13:42:00,196 | INFO     | ***************************************
[2025-10-12 09:42:48] 2025-10-12 13:42:00,197 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:42:48] 2025-10-12 13:42:00,197 | INFO     | ***************************************
[2025-10-12 09:42:48] 2025-10-12 13:42:00,197 | INFO     | 
[2025-10-12 09:42:48] 2025-10-12 13:42:00,197 | INFO     | architecture information:
[2025-10-12 09:42:48] 2025-10-12 13:42:00,198 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:42:48] 2025-10-12 13:42:00,212 | INFO     | cat /etc/os-release:
[2025-10-12 09:42:48] NAME="CentOS Linux"
[2025-10-12 09:42:48] VERSION="7 (Core)"
[2025-10-12 09:42:48] ID="centos"
[2025-10-12 09:42:48] ID_LIKE="rhel fedora"
[2025-10-12 09:42:48] VERSION_ID="7"
[2025-10-12 09:42:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:42:48] ANSI_COLOR="0;31"
[2025-10-12 09:42:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:42:48] HOME_URL="https://www.centos.org/"
[2025-10-12 09:42:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:42:48] 
[2025-10-12 09:42:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:42:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:42:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:42:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:42:48] 
[2025-10-12 09:42:48] 2025-10-12 13:42:00,212 | INFO     | ***************************************
[2025-10-12 09:42:48] 2025-10-12 13:42:00,715 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 09:42:48] 2025-10-12 13:42:00,733 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-12 09:42:48] 2025-10-12 13:42:00,733 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:42:48] 2025-10-12 13:42:00,733 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:42:48] 2025-10-12 13:42:00,733 | INFO     | update_server=False
[2025-10-12 09:42:48] 2025-10-12 13:42:00,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:42:48] 2025-10-12 13:42:00,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:42:48] 2025-10-12 13:42:00,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:42:48] 2025-10-12 13:42:00,870 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 09:42:48] 2025-10-12 13:42:00,870 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 09:42:48] 2025-10-12 13:42:00,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:42:48] 2025-10-12 13:42:00,870 | INFO     | will abort loop
[2025-10-12 09:42:48] 2025-10-12 13:42:01,113 | INFO     | all data control threads have been joined
[2025-10-12 09:42:48] 2025-10-12 13:42:01,715 | INFO     | all payload control threads have been joined
[2025-10-12 09:42:48] 2025-10-12 13:42:01,739 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:01,740 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:01,876 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:01,924 | INFO     | all job control threads have been joined
[2025-10-12 09:42:48] 2025-10-12 13:42:01,959 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:01,964 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:02,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:42:48] 2025-10-12 13:42:02,118 | INFO     | [data] control thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:02,202 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:02,281 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:02,721 | INFO     | [payload] control thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:02,929 | INFO     | [job] control thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:03,006 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:03,118 | INFO     | [job] validate thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:03,129 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:04,053 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:04,740 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:11,425 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:42:48] 2025-10-12 13:42:12,430 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:42:48] 2025-10-12 13:42:31,896 | INFO     | PID=30634 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 09:42:48] 2025-10-12 13:42:31,897 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:42:48] 2025-10-12 13:42:31,897 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:42:48] 2025-10-12 13:42:31,897 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:42:48] 2025-10-12 13:42:41,550 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:42:48] 2025-10-12 13:42:42,707 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139690848724800)>', '<ExcThread(monitor, started 139689944131328)>']
[2025-10-12 09:42:48] 2025-10-12 13:42:42,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:42:48] 2025-10-12 13:42:42,945 | INFO     | [monitor] control thread has ended
[2025-10-12 09:42:48] 2025-10-12 13:42:47,716 | INFO     | all workflow threads have been joined
[2025-10-12 09:42:48] 2025-10-12 13:42:47,716 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:42:48] 2025-10-12 13:42:47,717 | INFO     | traces error code: 0
[2025-10-12 09:42:48] 2025-10-12 13:42:47,717 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:42:48] 2025-10-12 13:42:47,807 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:42:48] 2025-10-12 13:42:47,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:42:48] 2025-10-12 13:42:47,814 [wrapper] pilotpid: 30634
[2025-10-12 09:42:48] 2025-10-12 13:42:47,818 [wrapper] Pilot exit status: 0
[2025-10-12 09:42:48] 2025-10-12 13:42:47,832 [wrapper] pandaids: 6839660558
[2025-10-12 09:42:48] 2025-10-12 13:42:47,879 [wrapper] cleanup supervisor_pilot 15006 30635
[2025-10-12 09:42:48] 2025-10-12 13:42:47,883 [wrapper] Test setup, not cleaning
[2025-10-12 09:42:48] 2025-10-12 13:42:47,888 [wrapper] apfmon messages muted
[2025-10-12 09:42:48] 2025-10-12 13:42:47,891 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:42:48] 2025-10-12 13:42:47,895 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:42:48]  *** Error codes and diagnostics ***
[2025-10-12 09:42:48]     "exeErrorCode": 0,
[2025-10-12 09:42:48]     "exeErrorDiag": "",
[2025-10-12 09:42:48]     "pilotErrorCode": 0,
[2025-10-12 09:42:48]     "pilotErrorDiag": "",
[2025-10-12 09:42:48]  *** Listing of results directory ***
[2025-10-12 09:42:48] total 412084
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 03:56 queuedata.json
[2025-10-12 09:42:48] -rwx------ 1 boincer umatlas     36292 Oct 12 03:57 runpilot2-wrapper.sh
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas       100 Oct 12 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:42:48] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 08:28 run_atlas
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas       105 Oct 12 08:28 job.xml
[2025-10-12 09:42:48] -rw-r--r-- 2 boincer umatlas 222417309 Oct 12 08:28 EVNT.46676267._003524.pool.root.1
[2025-10-12 09:42:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:28 start_atlas.sh
[2025-10-12 09:42:48] drwxrwx--x 2 boincer umatlas      4096 Oct 12 08:28 shared
[2025-10-12 09:42:48] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 08:28 input.tar.gz
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas         0 Oct 12 08:28 boinc_lockfile
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 08:28 pandaJob.out
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas    975512 Oct 12 08:28 agis_schedconf.cvmfs.json
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas   1560580 Oct 12 08:28 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:42:48] drwx------ 5 boincer umatlas      4096 Oct 12 08:28 pilot3
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 09:40 init_data.xml
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas 193616396 Oct 12 09:41 HITS.46676269._074049.pool.root.1
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas       529 Oct 12 09:41 boinc_task_state.xml
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas      1048 Oct 12 09:41 memory_monitor_summary.json
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas    379090 Oct 12 09:41 log.46676269._074049.job.log.tgz.1
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas      7858 Oct 12 09:41 heartbeat.json
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas        95 Oct 12 09:42 pilot_heartbeat.json
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas      5004 Oct 12 09:42 pilotlog.txt
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas    640134 Oct 12 09:42 log.46676269._074049.job.log.1
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 09:42 boinc_mmap_file
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas        27 Oct 12 09:42 wrapper_checkpoint.txt
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas       357 Oct 12 09:42 output.list
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas       620 Oct 12 09:42 runtime_log
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas   1034240 Oct 12 09:42 result.tar.gz
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 09:42 runtime_log.err
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas       659 Oct 12 09:42 Mq1KDmG85R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmc6iNDmfNWlsn.diag
[2025-10-12 09:42:48] -rw-r--r-- 1 boincer umatlas     21801 Oct 12 09:42 stderr.txt
[2025-10-12 09:42:48] HITS file was successfully produced:
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas 193616396 Oct 12 09:41 shared/HITS.pool.root.1
[2025-10-12 09:42:48]  *** Contents of shared directory: ***
[2025-10-12 09:42:48] total 407880
[2025-10-12 09:42:48] -rw-r--r-- 2 boincer umatlas 222417309 Oct 12 08:28 ATLAS.root_0
[2025-10-12 09:42:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:28 start_atlas.sh
[2025-10-12 09:42:48] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 08:28 input.tar.gz
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas 193616396 Oct 12 09:41 HITS.pool.root.1
[2025-10-12 09:42:48] -rw------- 1 boincer umatlas   1034240 Oct 12 09:42 result.tar.gz
09:42:49 (26852): run_atlas exited; CPU time 46070.188891
09:42:49 (26852): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN