Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:15:58 (896886): wrapper (7.7.26015): starting
18:15:58 (896886): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 18:15:58] Arguments: --nthreads 12
[2025-10-12 18:15:58] Threads: 12
[2025-10-12 18:15:58] Checking for CVMFS
[2025-10-12 18:15:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:15:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:15:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:15:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:15:59] 2.13.2.0 8715 29275 237464 151625 2 188 40331096 46080001 6410 130560 0 197597204 99.889 56041899 21597 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-12 18:15:59] CVMFS is ok
[2025-10-12 18:15:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:15:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:15:59] Further information can be found at the LHC@home message board.
[2025-10-12 18:15:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:15:59] Checking for apptainer binary...
[2025-10-12 18:15:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:15:59] Running /usr/bin/apptainer --version
[2025-10-12 18:15:59] apptainer version 1.4.2-1.el9
[2025-10-12 18:15:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:15:59] mff2104.farm.particle.cz
[2025-10-12 18:15:59] apptainer works
[2025-10-12 18:15:59] Set ATHENA_PROC_NUMBER=12
[2025-10-12 18:15:59] Set ATHENA_CORE_NUMBER=12
[2025-10-12 18:15:59] Starting ATLAS job with PandaID=6829338254
[2025-10-12 18:15:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:05:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:05:22]  workdir=None
[2025-10-12 19:05:22] ]
[2025-10-12 19:05:22] 2025-10-12 17:04:35,994 | INFO     | transferring file log.46376905._053927.job.log.tgz.1 from /scratch/.boinc/slots/3/PanDA_Pilot-6829338254/log.46376905._053927.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-12 19:05:22] 2025-10-12 17:04:35,994 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/3/PanDA_Pilot-6829338254/log.46376905._053927.job.log.tgz.1 /scratch/.boinc/slots/3/log.46376905._053927.j
[2025-10-12 19:05:22] 2025-10-12 17:04:36,024 | INFO     | adding to output.list: log.46376905._053927.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/99/log.46376905._053927.job.log.tg
[2025-10-12 19:05:22] 2025-10-12 17:04:36,026 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:05:22] 2025-10-12 17:04:36,026 | INFO     | summary of transferred files:
[2025-10-12 19:05:22] 2025-10-12 17:04:36,026 | INFO     |  -- lfn=log.46376905._053927.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:05:22] 2025-10-12 17:04:36,027 | INFO     | stage-out finished correctly
[2025-10-12 19:05:22] 2025-10-12 17:04:36,165 | WARNING  | process 908034 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 19:05:22] 2025-10-12 17:04:36,166 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6829338254/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:05:22] 2025-10-12 17:04:36,167 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6829338254/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:05:22] 2025-10-12 17:04:36,448 | INFO     | time since job start (2905s) is within the limit (172800.0s)
[2025-10-12 19:05:22] 2025-10-12 17:04:36,503 | INFO     | number of running child processes to parent process 908034: 1
[2025-10-12 19:05:22] 2025-10-12 17:04:36,503 | INFO     | maximum number of monitored processes: 6
[2025-10-12 19:05:22] 2025-10-12 17:04:38,454 | INFO     | time since job start (2907s) is within the limit (172800.0s)
[2025-10-12 19:05:22] 2025-10-12 17:04:39,006 | INFO     | monitor loop #214: job 0:6829338254 is in state 'finished'
[2025-10-12 19:05:22] 2025-10-12 17:04:39,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:05:22] 2025-10-12 17:04:39,373 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:05:22] 2025-10-12 17:04:39,462 | INFO     | job 6829338254 has state=finished
[2025-10-12 19:05:22] 2025-10-12 17:04:39,462 | INFO     | preparing for final server update for job 6829338254 in state='finished'
[2025-10-12 19:05:22] 2025-10-12 17:04:39,463 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:05:22] 2025-10-12 17:04:39,463 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:05:22] 2025-10-12 17:04:39,463 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:05:22] 2025-10-12 17:04:39,463 | INFO     | job 6829338254 has finished - writing final server update
[2025-10-12 19:05:22] 2025-10-12 17:04:39,464 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:05:22] 2025-10-12 17:04:39,465 | INFO     | executing command: lscpu
[2025-10-12 19:05:22] 2025-10-12 17:04:39,546 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:05:22] 2025-10-12 17:04:40,462 | INFO     | time since job start (2909s) is within the limit (172800.0s)
[2025-10-12 19:05:22] 2025-10-12 17:04:41,509 | INFO     | monitor loop #215: job 0:6829338254 is in state 'finished'
[2025-10-12 19:05:22] 2025-10-12 17:04:41,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:05:22] 2025-10-12 17:04:42,537 | INFO     | time since job start (2911s) is within the limit (172800.0s)
[2025-10-12 19:05:22] 2025-10-12 17:04:44,012 | INFO     | monitor loop #216: job 0:6829338254 is in state 'finished'
[2025-10-12 19:05:22] 2025-10-12 17:04:44,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:05:22] 2025-10-12 17:04:44,543 | INFO     | time since job start (2913s) is within the limit (172800.0s)
[2025-10-12 19:05:22] 2025-10-12 17:04:44,879 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:05:22] 2025-10-12 17:04:44,895 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2743.198156250001
[2025-10-12 19:05:22] 2025-10-12 17:04:44,913 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6829338254/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:05:22] 2025-10-12 17:04:44,913 | INFO     | extracted standard info from prmon json
[2025-10-12 19:05:22] 2025-10-12 17:04:44,913 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:05:22] 2025-10-12 17:04:44,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:05:22] 2025-10-12 17:04:44,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:05:22] 2025-10-12 17:04:44,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:05:22] 2025-10-12 17:04:44,915 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:05:22] 2025-10-12 17:04:44,916 | INFO     | sum of square deviations: 21358540.0
[2025-10-12 19:05:22] 2025-10-12 17:04:44,916 | INFO     | sum of deviations: -22814792.99999999
[2025-10-12 19:05:22] 2025-10-12 17:04:44,916 | INFO     | mean x: 1760287326.0
[2025-10-12 19:05:22] 2025-10-12 17:04:44,916 | INFO     | mean y: 2682821.8292682925
[2025-10-12 19:05:22] 2025-10-12 17:04:44,916 | INFO     | -- intersect: 1882988824.1690116
[2025-10-12 19:05:22] 2025-10-12 17:04:44,916 | INFO     | intersect: 1882988824.1690116
[2025-10-12 19:05:22] 2025-10-12 17:04:44,916 | INFO     | chi2: 0.001157902052351109
[2025-10-12 19:05:22] 2025-10-12 17:04:44,917 | INFO     | -- intersect: 1882988824.1690116
[2025-10-12 19:05:22] 2025-10-12 17:04:44,917 | INFO     | current memory leak: -1.07 B/s (using 41 data points, chi2=0.00)
[2025-10-12 19:05:22] 2025-10-12 17:04:44,917 | INFO     | could have reported an average CPU frequency of 2754 MHz (5 samples)
[2025-10-12 19:05:22] 2025-10-12 17:04:44,917 | INFO     | ..............................
[2025-10-12 19:05:22] 2025-10-12 17:04:44,917 | INFO     | . Timing measurements:
[2025-10-12 19:05:22] 2025-10-12 17:04:44,917 | INFO     | . get job = 0 s
[2025-10-12 19:05:22] 2025-10-12 17:04:44,917 | INFO     | . initial setup = 1 s
[2025-10-12 19:05:22] 2025-10-12 17:04:44,918 | INFO     | . payload setup = 7 s
[2025-10-12 19:05:22] 2025-10-12 17:04:44,918 | INFO     | . stage-in = 0 s
[2025-10-12 19:05:22] 2025-10-12 17:04:44,918 | INFO     | . payload execution = 2876 s
[2025-10-12 19:05:22] 2025-10-12 17:04:44,918 | INFO     | . stage-out = 0 s
[2025-10-12 19:05:22] 2025-10-12 17:04:44,918 | INFO     | . log creation = 0 s
[2025-10-12 19:05:22] 2025-10-12 17:04:44,918 | INFO     | ..............................
[2025-10-12 19:05:22] 2025-10-12 17:04:45,015 | INFO     | 
[2025-10-12 19:05:22] 2025-10-12 17:04:45,015 | INFO     | job summary report
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | --------------------------------------------------
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | PanDA job id: 6829338254
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | task id: 46376905
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | errors: (none)
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | pilot state: finished 
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | transexitcode: 0
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | exeerrorcode: 0
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | exeerrordiag: 
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | exitcode: 0
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | exitmsg: OK
[2025-10-12 19:05:22] 2025-10-12 17:04:45,016 | INFO     | cpuconsumptiontime: 30487 s
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | nevents: 400
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | neventsw: 0
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | pid: 908034
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | pgrp: 908034
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | corecount: 12
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | event service: False
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | sizes: {0: 2347985, 1: 2348842, 6: 2349104, 12: 2349132, 2887: 2374574, 2888: 2383574, 2891: 2383758, 2897: 2383984}
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | --------------------------------------------------
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | 
[2025-10-12 19:05:22] 2025-10-12 17:04:45,017 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-10-12 19:05:22] 2025-10-12 17:04:45,045 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,045 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,045 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,045 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,045 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,045 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:05:22] 2025-10-12 17:04:45,047 | INFO     | job 6829338254 has completed (purged errors)
[2025-10-12 19:05:22] 2025-10-12 17:04:45,047 | INFO     | overall cleanup function is called
[2025-10-12 19:05:22] 2025-10-12 17:04:46,057 | INFO     | --- collectZombieJob: --- 10, [908034]
[2025-10-12 19:05:22] 2025-10-12 17:04:46,057 | INFO     | zombie collector waiting for pid 908034
[2025-10-12 19:05:22] 2025-10-12 17:04:46,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:05:22] 2025-10-12 17:04:46,057 | INFO     | collected zombie processes
[2025-10-12 19:05:22] 2025-10-12 17:04:46,057 | INFO     | will attempt to kill all subprocesses of pid=908034
[2025-10-12 19:05:22] 2025-10-12 17:04:46,391 | INFO     | process IDs to be killed: [908034] (in reverse order)
[2025-10-12 19:05:22] 2025-10-12 17:04:46,507 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:05:22] 2025-10-12 17:04:46,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:05:22] 2025-10-12 17:04:46,520 | INFO     | did not find any defunct processes belonging to 908034
[2025-10-12 19:05:22] 2025-10-12 17:04:46,530 | INFO     | did not find any defunct processes belonging to 908034
[2025-10-12 19:05:22] 2025-10-12 17:04:46,530 | INFO     | ready for new job
[2025-10-12 19:05:22] 2025-10-12 17:04:46,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:05:22] 2025-10-12 17:04:46,532 | INFO     | ***************************************
[2025-10-12 19:05:22] 2025-10-12 17:04:46,532 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 19:05:22] 2025-10-12 17:04:46,532 | INFO     | ***************************************
[2025-10-12 19:05:22] 2025-10-12 17:04:46,532 | INFO     | 
[2025-10-12 19:05:22] 2025-10-12 17:04:46,538 | INFO     | architecture information:
[2025-10-12 19:05:22] 2025-10-12 17:04:46,539 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:05:22] 2025-10-12 17:04:46,560 | INFO     | cat /etc/os-release:
[2025-10-12 19:05:22] NAME="CentOS Linux"
[2025-10-12 19:05:22] VERSION="7 (Core)"
[2025-10-12 19:05:22] ID="centos"
[2025-10-12 19:05:22] ID_LIKE="rhel fedora"
[2025-10-12 19:05:22] VERSION_ID="7"
[2025-10-12 19:05:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:05:22] ANSI_COLOR="0;31"
[2025-10-12 19:05:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:05:22] HOME_URL="https://www.centos.org/"
[2025-10-12 19:05:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:05:22] 
[2025-10-12 19:05:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:05:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:05:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:05:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:05:22] 
[2025-10-12 19:05:22] 2025-10-12 17:04:46,560 | INFO     | ***************************************
[2025-10-12 19:05:22] 2025-10-12 17:04:47,063 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-10-12 19:05:22] 2025-10-12 17:04:47,090 | INFO     | sufficient remaining disk space (1681147297792 B)
[2025-10-12 19:05:22] 2025-10-12 17:04:47,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:05:22] 2025-10-12 17:04:47,090 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:05:22] 2025-10-12 17:04:47,090 | INFO     | update_server=False
[2025-10-12 19:05:22] 2025-10-12 17:04:47,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:05:22] 2025-10-12 17:04:47,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:05:22] 2025-10-12 17:04:47,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:05:22] 2025-10-12 17:04:47,519 | INFO     | aborting loop
[2025-10-12 19:05:22] 2025-10-12 17:04:47,591 | INFO     | all job control threads have been joined
[2025-10-12 19:05:22] 2025-10-12 17:04:47,659 | INFO     | all payload control threads have been joined
[2025-10-12 19:05:22] 2025-10-12 17:04:47,791 | INFO     | all data control threads have been joined
[2025-10-12 19:05:22] 2025-10-12 17:04:48,094 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,111 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,112 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,481 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,524 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,597 | INFO     | [job] control thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,665 | INFO     | [payload] control thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,796 | INFO     | [data] control thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:48,964 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:49,097 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:49,130 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:49,277 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:49,278 | INFO     | [job] validate thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:49,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:05:22] 2025-10-12 17:04:50,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:05:22] 2025-10-12 17:04:51,025 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:53,983 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:04:57,691 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:05:22] 2025-10-12 17:04:58,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:05:22] 2025-10-12 17:05:15,683 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:05:22] 2025-10-12 17:05:16,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659428067136)>', '<ExcThread(monitor, started 139658604291840)>']
[2025-10-12 19:05:22] 2025-10-12 17:05:18,041 | INFO     | PID=900971 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 19:05:22] 2025-10-12 17:05:18,042 | INFO     | .. there are 8 such processes running
[2025-10-12 19:05:22] 2025-10-12 17:05:18,043 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:05:22] 2025-10-12 17:05:18,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:05:22] 2025-10-12 17:05:18,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:05:22] 2025-10-12 17:05:18,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:05:22] 2025-10-12 17:05:18,043 | INFO     | [monitor] control thread has ended
[2025-10-12 19:05:22] 2025-10-12 17:05:21,815 | INFO     | all workflow threads have been joined
[2025-10-12 19:05:22] 2025-10-12 17:05:21,815 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:05:22] 2025-10-12 17:05:21,816 | INFO     | traces error code: 0
[2025-10-12 19:05:22] 2025-10-12 17:05:21,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:05:22] 2025-10-12 17:05:22,006 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:05:22] 2025-10-12 17:05:22,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:05:22] 2025-10-12 17:05:22,015 [wrapper] pilotpid: 900971
[2025-10-12 19:05:22] 2025-10-12 17:05:22,019 [wrapper] Pilot exit status: 0
[2025-10-12 19:05:22] 2025-10-12 17:05:22,033 [wrapper] pandaids: 6829338254
[2025-10-12 19:05:22] 2025-10-12 17:05:22,112 [wrapper] cleanup supervisor_pilot 1050006 900972
[2025-10-12 19:05:22] 2025-10-12 17:05:22,116 [wrapper] Test setup, not cleaning
[2025-10-12 19:05:22] 2025-10-12 17:05:22,120 [wrapper] apfmon messages muted
[2025-10-12 19:05:22] 2025-10-12 17:05:22,123 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:05:22] 2025-10-12 17:05:22,127 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:05:22]  *** Error codes and diagnostics ***
[2025-10-12 19:05:22]     "exeErrorCode": 0,
[2025-10-12 19:05:22]     "exeErrorDiag": "",
[2025-10-12 19:05:22]     "pilotErrorCode": 0,
[2025-10-12 19:05:22]     "pilotErrorDiag": "",
[2025-10-12 19:05:22]  *** Listing of results directory ***
[2025-10-12 19:05:22] total 388232
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc    552446 Oct  4 08:01 pilot3.tar.gz
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc      5112 Oct  4 08:11 queuedata.json
[2025-10-12 19:05:22] -rwx------ 1 boinc boinc     36292 Oct  4 08:11 runpilot2-wrapper.sh
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:05:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:15 run_atlas
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:15 job.xml
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc      6665 Oct 12 18:15 init_data.xml
[2025-10-12 19:05:22] -rw-r--r-- 2 boinc boinc 212950307 Oct 12 18:15 EVNT.46376901._001920.pool.root.1
[2025-10-12 19:05:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:15 start_atlas.sh
[2025-10-12 19:05:22] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:15 shared
[2025-10-12 19:05:22] -rw-r--r-- 2 boinc boinc    565596 Oct 12 18:15 input.tar.gz
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:15 boinc_lockfile
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc      2517 Oct 12 18:15 pandaJob.out
[2025-10-12 19:05:22] -rw------- 1 boinc boinc    975528 Oct 12 18:16 agis_schedconf.cvmfs.json
[2025-10-12 19:05:22] -rw------- 1 boinc boinc   1560580 Oct 12 18:16 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:05:22] drwx------ 4 boinc boinc      4096 Oct 12 18:16 pilot3
[2025-10-12 19:05:22] -rw------- 1 boinc boinc 179128599 Oct 12 19:04 HITS.46376905._053927.pool.root.1
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc       530 Oct 12 19:04 boinc_task_state.xml
[2025-10-12 19:05:22] -rw------- 1 boinc boinc      1022 Oct 12 19:04 memory_monitor_summary.json
[2025-10-12 19:05:22] -rw------- 1 boinc boinc    346853 Oct 12 19:04 log.46376905._053927.job.log.tgz.1
[2025-10-12 19:05:22] -rw------- 1 boinc boinc      7773 Oct 12 19:04 heartbeat.json
[2025-10-12 19:05:22] -rw------- 1 boinc boinc        95 Oct 12 19:05 pilot_heartbeat.json
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:05 boinc_mmap_file
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:05 wrapper_checkpoint.txt
[2025-10-12 19:05:22] -rw------- 1 boinc boinc      4897 Oct 12 19:05 pilotlog.txt
[2025-10-12 19:05:22] -rw------- 1 boinc boinc    444039 Oct 12 19:05 log.46376905._053927.job.log.1
[2025-10-12 19:05:22] -rw------- 1 boinc boinc       357 Oct 12 19:05 output.list
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:05 runtime_log
[2025-10-12 19:05:22] -rw------- 1 boinc boinc    808960 Oct 12 19:05 result.tar.gz
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc      8764 Oct 12 19:05 runtime_log.err
[2025-10-12 19:05:22] -rw------- 1 boinc boinc       663 Oct 12 19:05 P6bKDmmfAP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnzCMDm74blsn.diag
[2025-10-12 19:05:22] -rw-r--r-- 1 boinc boinc     22336 Oct 12 19:05 stderr.txt
[2025-10-12 19:05:22] HITS file was successfully produced:
[2025-10-12 19:05:22] -rw------- 1 boinc boinc 179128599 Oct 12 19:04 shared/HITS.pool.root.1
[2025-10-12 19:05:22]  *** Contents of shared directory: ***
[2025-10-12 19:05:22] total 384260
[2025-10-12 19:05:22] -rw-r--r-- 2 boinc boinc 212950307 Oct 12 18:15 ATLAS.root_0
[2025-10-12 19:05:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:15 start_atlas.sh
[2025-10-12 19:05:22] -rw-r--r-- 2 boinc boinc    565596 Oct 12 18:15 input.tar.gz
[2025-10-12 19:05:22] -rw------- 1 boinc boinc 179128599 Oct 12 19:04 HITS.pool.root.1
[2025-10-12 19:05:22] -rw------- 1 boinc boinc    808960 Oct 12 19:05 result.tar.gz
19:05:24 (896886): run_atlas exited; CPU time 30538.483737
19:05:24 (896886): called boinc_finish(0)

</stderr_txt>
]]>

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