Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 13:41:05 (11932): vboxwrapper version 26210
2025-10-13 13:41:05 (11932): BOINC client version: 7.16.5
2025-10-13 13:41:06 (11932): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-10-13 13:41:06 (11932): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 13:41:07 (11932): Create VM. (boinc_89805b53d3952acc, slot#2)
2025-10-13 13:41:07 (11932): Setting Memory Size for VM. (4400MB)
2025-10-13 13:41:07 (11932): Setting CPU Count for VM. (4)
2025-10-13 13:41:08 (11932): Setting Chipset Options for VM.
2025-10-13 13:41:08 (11932): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 13:41:08 (11932): Setting Boot Options for VM.
2025-10-13 13:41:09 (11932): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 13:41:09 (11932): Enabling VM Network Access.
2025-10-13 13:41:09 (11932): Disabling USB Support for VM.
2025-10-13 13:41:09 (11932): Disabling COM Port Support for VM.
2025-10-13 13:41:10 (11932): Disabling LPT Port Support for VM.
2025-10-13 13:41:10 (11932): Disabling Audio Support for VM.
2025-10-13 13:41:10 (11932): Disabling Clipboard Support for VM.
2025-10-13 13:41:10 (11932): Disabling Drag and Drop Support for VM.
2025-10-13 13:41:11 (11932): Adding storage controller(s) to VM.
2025-10-13 13:41:11 (11932): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 13:41:11 (11932): Adding VirtualBox Guest Additions to VM.
2025-10-13 13:41:12 (11932): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 13:41:12 (11932): forwarding host port 49200 to guest port 80
2025-10-13 13:41:12 (11932): Enabling remote desktop for VM.
2025-10-13 13:41:13 (11932): Enabling shared directory for VM.
2025-10-13 13:41:13 (11932): Starting VM using VBoxManage interface. (boinc_89805b53d3952acc, slot#2)
2025-10-13 13:41:17 (11932): Successfully started VM. (PID = '28720')
2025-10-13 13:41:17 (11932): Reporting VM Process ID to BOINC.
2025-10-13 13:41:17 (11932): Guest Log: BIOS: VirtualBox 5.2.44
2025-10-13 13:41:17 (11932): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 13:41:17 (11932): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 13:41:17 (11932): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 13:41:17 (11932): Detected: Web Application Enabled (http://localhost:49200)
2025-10-13 13:41:17 (11932): Detected: Remote Desktop Enabled (localhost:49201)
2025-10-13 13:41:17 (11932): Preference change detected
2025-10-13 13:41:17 (11932): Setting CPU throttle for VM. (100%)
2025-10-13 13:41:18 (11932): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 13:41:19 (11932): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 13:41:19 (11932): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 13:41:22 (11932): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 13:41:22 (11932): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 13:41:22 (11932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 13:41:28 (11932): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 13:41:28 (11932): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-13 13:41:34 (11932): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.000136 main     Log opened 2025-10-13T13:41:32.689698000Z
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.000240 main     OS Product: Linux
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.000272 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.000295 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.000318 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.000319 main     Process ID: 1304
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.000320 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 13:41:34 (11932): Guest Log: 00:00:00.001786 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 13:41:34 (11932): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 13:41:34 (11932): Guest Log: [INFO] Mounting shared directory
2025-10-13 13:41:34 (11932): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 13:41:39 (11932): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 13:41:39 (11932): Guest Log: [INFO] Detected branch: prod
2025-10-13 13:41:40 (11932): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 13:41:40 (11932): Guest Log: Copying input files
2025-10-13 13:41:42 (11932): Guest Log: Copied input files into RunAtlas.
2025-10-13 13:41:43 (11932): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 13:41:43 (11932): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 13:41:43 (11932): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 13:41:43 (11932): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 13:41:44 (11932): Guest Log: 00:00:10.006295 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 328 595 000ns (GuestNow=1 760 352 104 364 109 000 ns GuestLast=1 760 362 892 692 704 000 ns fSetTimeLastLoop=true )
2025-10-13 13:41:51 (11932): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 13:41:51 (11932): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 13:41:51 (11932): Guest Log: 2.6.3.0 1580 0 30136 151658 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 13:41:52 (11932): Guest Log: copied the webapp to /var/www
2025-10-13 13:41:52 (11932): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-13 13:41:52 (11932): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-13 13:41:52 (11932): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 13:41:52 (11932): Guest Log:  *** Starting ATLAS job. (PandaID=6829167701 taskID=46376905) ***
2025-10-13 15:18:25 (11932): Preference change detected
2025-10-13 15:18:25 (11932): Setting CPU throttle for VM. (100%)
2025-10-13 15:18:25 (11932): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 15:21:21 (11932): Status Report: Elapsed Time: '6000.000000'
2025-10-13 15:21:21 (11932): Status Report: CPU Time: '21832.468750'
2025-10-13 16:47:00 (11932): Guest Log:  *** Job finished ***
2025-10-13 16:47:00 (11932): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:52,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:52,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:52,943 | INFO     | [monitor] cgroup control has ended
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:53,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140462964946752)>', '<ExcThread(monitor, started 140461863855872)>']
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:53,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:53,497 | INFO     | [monitor] control thread has ended
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,264 | INFO     | all workflow threads have been joined
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,264 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,265 | INFO     | traces error code: 0
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,357 [wrapper] ==== pilot stdout END ====
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,363 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,368 [wrapper] pilotpid: 5976
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,373 [wrapper] Pilot exit status: 0
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,440 [wrapper] pandaids: 6829167701
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,468 [wrapper] cleanup supervisor_pilot  8548 5977
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,473 [wrapper] Test setup, not cleaning
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,477 [wrapper] apfmon messages muted
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,481 [wrapper] ==== wrapper stdout END ====
2025-10-13 16:47:00 (11932): Guest Log: 2025-10-13 13:46:58,486 [wrapper] ==== wrapper stderr END ====
2025-10-13 16:47:00 (11932): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 16:47:00 (11932): Guest Log:     "exeErrorCode": 0,
2025-10-13 16:47:00 (11932): Guest Log:     "exeErrorDiag": "",
2025-10-13 16:47:00 (11932): Guest Log:     "pilotErrorCode": 0,
2025-10-13 16:47:00 (11932): Guest Log:     "pilotErrorDiag": "",
2025-10-13 16:47:00 (11932): Guest Log:  *** Listing of results directory ***
2025-10-13 16:47:00 (11932): Guest Log: total 181040
2025-10-13 16:47:00 (11932): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  4 02:46 pilot3.tar.gz
2025-10-13 16:47:00 (11932): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  4 03:10 queuedata.json
2025-10-13 16:47:00 (11932): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  4 03:10 runpilot2-wrapper.sh
2025-10-13 16:47:00 (11932): Guest Log: -rwxr-xr-x. 1 atlas atlas      8858 Oct 13 10:41 init_data.xml
2025-10-13 16:47:00 (11932): Guest Log: -rwxr-xr-x. 1 atlas atlas    565602 Oct 13 10:41 input.tar.gz
2025-10-13 16:47:00 (11932): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 10:41 start_atlas.sh
2025-10-13 16:47:00 (11932): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 10:41 EVNT.46376901._001820.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 16:47:00 (11932): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct 13 10:41 pandaJob.out
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas    972497 Oct 13 10:42 agis_schedconf.cvmfs.json
2025-10-13 16:47:00 (11932): Guest Log: drwx------. 4 atlas atlas      4096 Oct 13 10:42 pilot3
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas 177936696 Oct 13 13:45 HITS.46376905._051399.pool.root.1
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas      1033 Oct 13 13:46 memory_monitor_summary.json
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 13:46 agis_ddmendpoints.agis.ALL.json
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas    344691 Oct 13 13:46 log.46376905._051399.job.log.tgz.1
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 13:46 pilot_heartbeat.json
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas      7827 Oct 13 13:46 heartbeat.json
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 13 13:46 pilotlog.txt
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas   1467036 Oct 13 13:46 log.46376905._051399.job.log.1
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 13:46 output.list
2025-10-13 16:47:00 (11932): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 13:46 runtime_log
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas   1832960 Oct 13 13:46 result.tar.gz
2025-10-13 16:47:00 (11932): Guest Log: -rw-r--r--. 1 atlas atlas      8679 Oct 13 13:46 runtime_log.err
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas       671 Oct 13 13:46 J59LDmbq7O8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxxJNDmufGxPo.diag
2025-10-13 16:47:00 (11932): Guest Log: Looking for outputfile HITS.46376905._051399.pool.root.1
2025-10-13 16:47:00 (11932): Guest Log: HITS file was successfully produced
2025-10-13 16:47:00 (11932): Guest Log: -rw-------. 1 atlas atlas 177936696 Oct 13 13:45 /home/atlas/RunAtlas/HITS.46376905._051399.pool.root.1
2025-10-13 16:47:01 (11932): Guest Log: Successfully finished the ATLAS job!
2025-10-13 16:47:01 (11932): Guest Log: Copying the results back to the shared directory!
2025-10-13 16:47:01 (11932): Guest Log:  *** Contents of shared directory: ***
2025-10-13 16:47:01 (11932): Guest Log: total 386892
2025-10-13 16:47:01 (11932): Guest Log: -rwxrwxrwx. 1 root root 215802883 Oct 13 10:41 ATLAS.root_0
2025-10-13 16:47:01 (11932): Guest Log: -rwxrwxrwx. 1 root root 177936696 Oct 13 13:47 HITS.pool.root.1
2025-10-13 16:47:01 (11932): Guest Log: -rwxrwxrwx. 1 root root      8858 Oct 13 10:41 init_data.xml
2025-10-13 16:47:01 (11932): Guest Log: -rwxrwxrwx. 1 root root    565602 Oct 12 12:29 input.tar.gz
2025-10-13 16:47:01 (11932): Guest Log: -rwxrwxrwx. 1 root root   1832960 Oct 13 13:47 result.tar.gz
2025-10-13 16:47:01 (11932): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 12:29 start_atlas.sh
2025-10-13 16:47:01 (11932): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 16:47:01 (11932): VM Completion File Detected.
2025-10-13 16:47:01 (11932): Powering off VM.
2025-10-13 16:47:02 (11932): Successfully stopped VM.
2025-10-13 16:47:02 (11932): Deregistering VM. (boinc_89805b53d3952acc, slot#2)
2025-10-13 16:47:02 (11932): Removing network bandwidth throttle group from VM.
2025-10-13 16:47:02 (11932): Removing VM from VirtualBox.
2025-10-13 16:47:07 (11932): called boinc_finish(0)

</stderr_txt>
]]>

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