Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:19:27 (601251): wrapper (7.7.26015): starting
13:19:27 (601251): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 13:19:27] Arguments: --nthreads 11
[2025-10-12 13:19:27] Threads: 11
[2025-10-12 13:19:27] Checking for CVMFS
[2025-10-12 13:19:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:19:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:19:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:19:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:19:29] 2.13.2.0 21981 53173 125764 151629 0 64 37260220 40960000 9594 16776704 0 45342295 99.736 32056787 34419 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 13:19:29] CVMFS is ok
[2025-10-12 13:19:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:19:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:19:29] Further information can be found at the LHC@home message board.
[2025-10-12 13:19:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:19:29] Checking for apptainer binary...
[2025-10-12 13:19:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:19:29] Running /usr/bin/apptainer --version
[2025-10-12 13:19:29] apptainer version 1.4.3-1.el9
[2025-10-12 13:19:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:19:29] c-211-7.aglt2.org
[2025-10-12 13:19:29] apptainer works
[2025-10-12 13:19:29] Set ATHENA_PROC_NUMBER=11
[2025-10-12 13:19:29] Set ATHENA_CORE_NUMBER=11
[2025-10-12 13:19:29] Starting ATLAS job with PandaID=6839660063
[2025-10-12 13:19:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:26:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:26:06] 2025-10-13 01:25:13,797 | INFO     | time since job start (29106s) is within the limit (172800.0s)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,145 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:26:06] 2025-10-13 01:25:15,178 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2394.8005625
[2025-10-12 21:26:06] 2025-10-13 01:25:15,201 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839660063/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,207 | INFO     | extracted standard info from prmon json
[2025-10-12 21:26:06] 2025-10-13 01:25:15,207 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:26:06] 2025-10-13 01:25:15,207 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:26:06] 2025-10-13 01:25:15,211 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:26:06] 2025-10-13 01:25:15,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:26:06] 2025-10-13 01:25:15,231 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:26:06] 2025-10-13 01:25:15,236 | INFO     | sum of square deviations: 33441746435.924397
[2025-10-12 21:26:06] 2025-10-13 01:25:15,253 | INFO     | sum of deviations: -18361152652.23949
[2025-10-12 21:26:06] 2025-10-13 01:25:15,253 | INFO     | mean x: 1760304166.1302521
[2025-10-12 21:26:06] 2025-10-13 01:25:15,253 | INFO     | mean y: 2660417.245798319
[2025-10-12 21:26:06] 2025-10-13 01:25:15,254 | INFO     | -- intersect: 969153407.3956796
[2025-10-12 21:26:06] 2025-10-13 01:25:15,254 | INFO     | intersect: 969153407.3956796
[2025-10-12 21:26:06] 2025-10-13 01:25:15,259 | INFO     | chi2: 3.1011764251348013
[2025-10-12 21:26:06] 2025-10-13 01:25:15,260 | INFO     | sum of square deviations: 32399009078.917145
[2025-10-12 21:26:06] 2025-10-13 01:25:15,276 | INFO     | sum of deviations: 13849813242.343946
[2025-10-12 21:26:06] 2025-10-13 01:25:15,276 | INFO     | mean x: 1760304013.6369426
[2025-10-12 21:26:06] 2025-10-13 01:25:15,276 | INFO     | mean y: 2665088.0721868365
[2025-10-12 21:26:06] 2025-10-13 01:25:15,276 | INFO     | -- intersect: -749823414.8704767
[2025-10-12 21:26:06] 2025-10-13 01:25:15,277 | INFO     | intersect: -749823414.8704767
[2025-10-12 21:26:06] 2025-10-13 01:25:15,282 | INFO     | chi2: 2.4083525358039424
[2025-10-12 21:26:06] 2025-10-13 01:25:15,282 | INFO     | current chi2=2.4083525358039424 (change=22.340679611632975 %)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,282 | INFO     | right removable region: 470
[2025-10-12 21:26:06] 2025-10-13 01:25:15,283 | INFO     | sum of square deviations: 32398826078.91709
[2025-10-12 21:26:06] 2025-10-13 01:25:15,303 | INFO     | sum of deviations: -126561282572.70699
[2025-10-12 21:26:06] 2025-10-13 01:25:15,303 | INFO     | mean x: 1760304318.6369426
[2025-10-12 21:26:06] 2025-10-13 01:25:15,303 | INFO     | mean y: 2676194.9256900214
[2025-10-12 21:26:06] 2025-10-13 01:25:15,303 | INFO     | -- intersect: 6879047941.92366
[2025-10-12 21:26:06] 2025-10-13 01:25:15,304 | INFO     | intersect: 6879047941.92366
[2025-10-12 21:26:06] 2025-10-13 01:25:15,304 | INFO     | chi2: 1.097780972182611
[2025-10-12 21:26:06] 2025-10-13 01:25:15,305 | INFO     | current chi2=1.097780972182611 (change=64.6011441566117 %)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,305 | INFO     | sum of square deviations: 31377813109.366844
[2025-10-12 21:26:06] 2025-10-13 01:25:15,324 | INFO     | sum of deviations: -133324863596.7597
[2025-10-12 21:26:06] 2025-10-13 01:25:15,327 | INFO     | mean x: 1760304471.143777
[2025-10-12 21:26:06] 2025-10-13 01:25:15,327 | INFO     | mean y: 2677192.772532189
[2025-10-12 21:26:06] 2025-10-13 01:25:15,328 | INFO     | -- intersect: 7482240943.311615
[2025-10-12 21:26:06] 2025-10-13 01:25:15,328 | INFO     | intersect: 7482240943.311615
[2025-10-12 21:26:06] 2025-10-13 01:25:15,329 | INFO     | chi2: 1.0537221905704042
[2025-10-12 21:26:06] 2025-10-13 01:25:15,329 | INFO     | current chi2=1.0537221905704042 (change=4.0134400876532865 %)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,329 | INFO     | left removable region: 20
[2025-10-12 21:26:06] 2025-10-13 01:25:15,330 | INFO     | sum of square deviations: 28255410983.79812
[2025-10-12 21:26:06] 2025-10-13 01:25:15,354 | INFO     | sum of deviations: -53105043750.70009
[2025-10-12 21:26:06] 2025-10-13 01:25:15,354 | INFO     | mean x: 1760304593.1577778
[2025-10-12 21:26:06] 2025-10-13 01:25:15,354 | INFO     | mean y: 2674677.7
[2025-10-12 21:26:06] 2025-10-13 01:25:15,354 | INFO     | -- intersect: 3311104786.4605803
[2025-10-12 21:26:06] 2025-10-13 01:25:15,355 | INFO     | intersect: 3311104786.4605803
[2025-10-12 21:26:06] 2025-10-13 01:25:15,360 | INFO     | chi2: 0.22590669863647625
[2025-10-12 21:26:06] 2025-10-13 01:25:15,360 | INFO     | -- intersect: 3311104786.4605803
[2025-10-12 21:26:06] 2025-10-13 01:25:15,360 | INFO     | current memory leak: -1.88 B/s (using 450 data points, chi2=0.23)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,361 | INFO     | could have reported an average CPU frequency of 2440 MHz (19 samples)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,362 | INFO     | ..............................
[2025-10-12 21:26:06] 2025-10-13 01:25:15,362 | INFO     | . Timing measurements:
[2025-10-12 21:26:06] 2025-10-13 01:25:15,362 | INFO     | . get job = 0 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,362 | INFO     | . initial setup = 6 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,362 | INFO     | . payload setup = 16 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,362 | INFO     | . stage-in = 0 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,362 | INFO     | . payload execution = 29023 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,363 | INFO     | . stage-out = 3 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,363 | INFO     | . log creation = 0 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,363 | INFO     | ..............................
[2025-10-12 21:26:06] 2025-10-13 01:25:15,866 | INFO     | 
[2025-10-12 21:26:06] 2025-10-13 01:25:15,866 | INFO     | job summary report
[2025-10-12 21:26:06] 2025-10-13 01:25:15,867 | INFO     | --------------------------------------------------
[2025-10-12 21:26:06] 2025-10-13 01:25:15,867 | INFO     | PanDA job id: 6839660063
[2025-10-12 21:26:06] 2025-10-13 01:25:15,867 | INFO     | task id: 46676269
[2025-10-12 21:26:06] 2025-10-13 01:25:15,867 | INFO     | errors: (none)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,867 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:26:06] 2025-10-13 01:25:15,867 | INFO     | pilot state: finished 
[2025-10-12 21:26:06] 2025-10-13 01:25:15,867 | INFO     | transexitcode: 0
[2025-10-12 21:26:06] 2025-10-13 01:25:15,868 | INFO     | exeerrorcode: 0
[2025-10-12 21:26:06] 2025-10-13 01:25:15,868 | INFO     | exeerrordiag: 
[2025-10-12 21:26:06] 2025-10-13 01:25:15,868 | INFO     | exitcode: 0
[2025-10-12 21:26:06] 2025-10-13 01:25:15,868 | INFO     | exitmsg: OK
[2025-10-12 21:26:06] 2025-10-13 01:25:15,868 | INFO     | cpuconsumptiontime: 62922 s
[2025-10-12 21:26:06] 2025-10-13 01:25:15,868 | INFO     | nevents: 400
[2025-10-12 21:26:06] 2025-10-13 01:25:15,868 | INFO     | neventsw: 0
[2025-10-12 21:26:06] 2025-10-13 01:25:15,869 | INFO     | pid: 612700
[2025-10-12 21:26:06] 2025-10-13 01:25:15,869 | INFO     | pgrp: 612700
[2025-10-12 21:26:06] 2025-10-13 01:25:15,869 | INFO     | corecount: 11
[2025-10-12 21:26:06] 2025-10-13 01:25:15,869 | INFO     | event service: False
[2025-10-12 21:26:06] 2025-10-13 01:25:15,869 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348913, 13: 2348913, 17: 2349231, 24: 2349259, 29043: 2387020, 29044: 2387019, 29048: 2396129, 29071: 2396267}
[2025-10-12 21:26:06] 2025-10-13 01:25:15,869 | INFO     | --------------------------------------------------
[2025-10-12 21:26:06] 2025-10-13 01:25:15,869 | INFO     | 
[2025-10-12 21:26:06] 2025-10-13 01:25:15,870 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 21:26:06] 2025-10-13 01:25:15,981 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,981 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,981 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,982 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,982 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,982 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,984 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:26:06] 2025-10-13 01:25:15,984 | INFO     | job 6839660063 has completed (purged errors)
[2025-10-12 21:26:06] 2025-10-13 01:25:15,988 | INFO     | overall cleanup function is called
[2025-10-12 21:26:06] 2025-10-13 01:25:16,338 | INFO     | PID=604915 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:26:06] 2025-10-13 01:25:16,339 | INFO     | .. there are 8 such processes running
[2025-10-12 21:26:06] 2025-10-13 01:25:17,016 | INFO     | --- collectZombieJob: --- 10, [612700]
[2025-10-12 21:26:06] 2025-10-13 01:25:17,016 | INFO     | zombie collector waiting for pid 612700
[2025-10-12 21:26:06] 2025-10-13 01:25:17,017 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:26:06] 2025-10-13 01:25:17,017 | INFO     | collected zombie processes
[2025-10-12 21:26:06] 2025-10-13 01:25:17,017 | INFO     | will attempt to kill all subprocesses of pid=612700
[2025-10-12 21:26:06] 2025-10-13 01:25:17,599 | INFO     | process IDs to be killed: [612700] (in reverse order)
[2025-10-12 21:26:06] 2025-10-13 01:25:17,817 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:26:06] 2025-10-13 01:25:17,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:26:06] 2025-10-13 01:25:17,865 | INFO     | did not find any defunct processes belonging to 612700
[2025-10-12 21:26:06] 2025-10-13 01:25:17,888 | INFO     | did not find any defunct processes belonging to 612700
[2025-10-12 21:26:06] 2025-10-13 01:25:17,888 | INFO     | ready for new job
[2025-10-12 21:26:06] 2025-10-13 01:25:17,888 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:26:06] 2025-10-13 01:25:17,913 | INFO     | ***************************************
[2025-10-12 21:26:06] 2025-10-13 01:25:17,913 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:26:06] 2025-10-13 01:25:17,913 | INFO     | ***************************************
[2025-10-12 21:26:06] 2025-10-13 01:25:17,914 | INFO     | 
[2025-10-12 21:26:06] 2025-10-13 01:25:17,924 | INFO     | architecture information:
[2025-10-12 21:26:06] 2025-10-13 01:25:17,932 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:26:06] 2025-10-13 01:25:18,011 | INFO     | cat /etc/os-release:
[2025-10-12 21:26:06] NAME="CentOS Linux"
[2025-10-12 21:26:06] VERSION="7 (Core)"
[2025-10-12 21:26:06] ID="centos"
[2025-10-12 21:26:06] ID_LIKE="rhel fedora"
[2025-10-12 21:26:06] VERSION_ID="7"
[2025-10-12 21:26:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:26:06] ANSI_COLOR="0;31"
[2025-10-12 21:26:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:26:06] HOME_URL="https://www.centos.org/"
[2025-10-12 21:26:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:26:06] 
[2025-10-12 21:26:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:26:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:26:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:26:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:26:06] 
[2025-10-12 21:26:06] 2025-10-13 01:25:18,012 | INFO     | ***************************************
[2025-10-12 21:26:06] 2025-10-13 01:25:18,515 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 21:26:06] 2025-10-13 01:25:18,584 | INFO     | sufficient remaining disk space (63772295168 B)
[2025-10-12 21:26:06] 2025-10-13 01:25:18,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:26:06] 2025-10-13 01:25:18,585 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:26:06] 2025-10-13 01:25:18,585 | INFO     | update_server=False
[2025-10-12 21:26:06] 2025-10-13 01:25:18,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:26:06] 2025-10-13 01:25:18,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:26:06] 2025-10-13 01:25:18,770 | INFO     | all payload control threads have been joined
[2025-10-12 21:26:06] 2025-10-13 01:25:19,271 | INFO     | all job control threads have been joined
[2025-10-12 21:26:06] 2025-10-13 01:25:19,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:26:06] 2025-10-13 01:25:19,358 | INFO     | aborting loop
[2025-10-12 21:26:06] 2025-10-13 01:25:19,494 | INFO     | all data control threads have been joined
[2025-10-12 21:26:06] 2025-10-13 01:25:19,591 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:19,731 | INFO     | [job] validate thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:19,776 | INFO     | [payload] control thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:19,866 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:19,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:19,871 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,057 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,225 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,277 | INFO     | [job] control thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,363 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,405 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,474 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,500 | INFO     | [data] control thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,592 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:20,895 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:26:06] 2025-10-13 01:25:21,730 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:26:06] 2025-10-13 01:25:21,925 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:25,743 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:26:06] 2025-10-13 01:25:49,238 | INFO     | PID=604915 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:26:06] 2025-10-13 01:25:49,239 | INFO     | .. there are 8 such processes running
[2025-10-12 21:26:06] 2025-10-13 01:25:49,239 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:26:06] 2025-10-13 01:25:49,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:26:06] 2025-10-13 01:25:49,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:26:06] 2025-10-13 01:25:58,944 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:26:06] 2025-10-13 01:25:59,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139696742926144)>', '<ExcThread(monitor, started 139695941998336)>']
[2025-10-12 21:26:06] 2025-10-13 01:25:59,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:26:06] 2025-10-13 01:25:59,299 | INFO     | [monitor] control thread has ended
[2025-10-12 21:26:06] 2025-10-13 01:26:04,176 | INFO     | all workflow threads have been joined
[2025-10-12 21:26:06] 2025-10-13 01:26:04,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:26:06] 2025-10-13 01:26:04,178 | INFO     | traces error code: 0
[2025-10-12 21:26:06] 2025-10-13 01:26:04,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:26:06] 2025-10-13 01:26:05,067 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:26:06] 2025-10-13 01:26:05,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:26:06] 2025-10-13 01:26:05,130 [wrapper] pilotpid: 604915
[2025-10-12 21:26:06] 2025-10-13 01:26:05,161 [wrapper] Pilot exit status: 0
[2025-10-12 21:26:06] 2025-10-13 01:26:05,274 [wrapper] pandaids: 6839660063
[2025-10-12 21:26:06] 2025-10-13 01:26:05,408 [wrapper] cleanup supervisor_pilot 1263771 604916
[2025-10-12 21:26:06] 2025-10-13 01:26:05,472 [wrapper] Test setup, not cleaning
[2025-10-12 21:26:06] 2025-10-13 01:26:05,537 [wrapper] apfmon messages muted
[2025-10-12 21:26:06] 2025-10-13 01:26:05,548 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:26:06] 2025-10-13 01:26:05,552 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:26:06]  *** Error codes and diagnostics ***
[2025-10-12 21:26:06]     "exeErrorCode": 0,
[2025-10-12 21:26:06]     "exeErrorDiag": "",
[2025-10-12 21:26:06]     "pilotErrorCode": 0,
[2025-10-12 21:26:06]     "pilotErrorDiag": "",
[2025-10-12 21:26:06]  *** Listing of results directory ***
[2025-10-12 21:26:06] total 417424
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 03:48 queuedata.json
[2025-10-12 21:26:06] -rwx------. 1 boincer umatlas     36292 Oct 12 03:48 runpilot2-wrapper.sh
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas       100 Oct 12 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:26:06] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 13:19 run_atlas
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas       105 Oct 12 13:19 job.xml
[2025-10-12 21:26:06] -rw-r--r--. 2 boincer umatlas 219880833 Oct 12 13:19 EVNT.46676267._003514.pool.root.1
[2025-10-12 21:26:06] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 13:19 shared
[2025-10-12 21:26:06] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 13:19 input.tar.gz
[2025-10-12 21:26:06] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 13:19 start_atlas.sh
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas         0 Oct 12 13:19 boinc_lockfile
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 13:19 pandaJob.out
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas    975528 Oct 12 13:20 agis_schedconf.cvmfs.json
[2025-10-12 21:26:06] drwx------. 5 boincer umatlas      4096 Oct 12 13:20 pilot3
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas      6614 Oct 12 21:22 init_data.xml
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas 194932868 Oct 12 21:23 HITS.46676269._073835.pool.root.1
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas       531 Oct 12 21:23 boinc_task_state.xml
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas      1042 Oct 12 21:24 memory_monitor_summary.json
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas   1560580 Oct 12 21:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas    700846 Oct 12 21:24 log.46676269._073835.job.log.tgz.1
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas        95 Oct 12 21:25 pilot_heartbeat.json
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas      7830 Oct 12 21:25 heartbeat.json
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas        28 Oct 12 21:26 wrapper_checkpoint.txt
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:26 boinc_mmap_file
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas      4822 Oct 12 21:26 pilotlog.txt
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas   3659123 Oct 12 21:26 log.46676269._073835.job.log.1
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas       357 Oct 12 21:26 output.list
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:26 runtime_log
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas   4382720 Oct 12 21:26 result.tar.gz
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas       657 Oct 12 21:26 SuVLDmnz5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmz3iNDmZsgQkm.diag
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas      8701 Oct 12 21:26 runtime_log.err
[2025-10-12 21:26:06] -rw-r--r--. 1 boincer umatlas     21269 Oct 12 21:26 stderr.txt
[2025-10-12 21:26:06] HITS file was successfully produced:
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas 194932868 Oct 12 21:23 shared/HITS.pool.root.1
[2025-10-12 21:26:06]  *** Contents of shared directory: ***
[2025-10-12 21:26:06] total 409956
[2025-10-12 21:26:06] -rw-r--r--. 2 boincer umatlas 219880833 Oct 12 13:19 ATLAS.root_0
[2025-10-12 21:26:06] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 13:19 input.tar.gz
[2025-10-12 21:26:06] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 13:19 start_atlas.sh
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas 194932868 Oct 12 21:23 HITS.pool.root.1
[2025-10-12 21:26:06] -rw-------. 1 boincer umatlas   4382720 Oct 12 21:26 result.tar.gz
21:26:07 (601251): run_atlas exited; CPU time 63757.004513
21:26:07 (601251): called boinc_finish(0)

</stderr_txt>
]]>

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