Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:55 (1857): wrapper (7.7.26015): starting
08:31:55 (1857): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 08:31:55] Arguments: --nthreads 8
[2025-10-12 08:31:55] Threads: 8
[2025-10-12 08:31:55] Checking for CVMFS
[2025-10-12 08:31:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:31:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:31:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:31:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:31:55] 2.11.2.0 2843 2839 71912 151620 3 59 12104255 20275200 1 130560 0 1995510 99.990 98394 35216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:31:55] CVMFS is ok
[2025-10-12 08:31:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:31:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:31:55] Further information can be found at the LHC@home message board.
[2025-10-12 08:31:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:31:55] Checking for apptainer binary...
[2025-10-12 08:31:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:31:55] Running /usr/bin/apptainer --version
[2025-10-12 08:31:55] apptainer version 1.3.2-1.el7
[2025-10-12 08:31:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:31:57] c-204-34.aglt2.org
[2025-10-12 08:31:57] apptainer works
[2025-10-12 08:31:57] Set ATHENA_PROC_NUMBER=8
[2025-10-12 08:31:57] Set ATHENA_CORE_NUMBER=8
[2025-10-12 08:31:57] Starting ATLAS job with PandaID=6839660213
[2025-10-12 08:31:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:41:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:41:32] 2025-10-12 14:40:37,052 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:41:32] 2025-10-12 14:40:37,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:41:32] 2025-10-12 14:40:37,052 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:41:32] 2025-10-12 14:40:37,053 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:41:32] 2025-10-12 14:40:37,055 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:41:32] 2025-10-12 14:40:37,055 | INFO     | sum of square deviations: 620244187.5
[2025-10-12 10:41:32] 2025-10-12 14:40:37,056 | INFO     | sum of deviations: -2540877011.5000057
[2025-10-12 10:41:32] 2025-10-12 14:40:37,056 | INFO     | mean x: 1760276177.5
[2025-10-12 10:41:32] 2025-10-12 14:40:37,056 | INFO     | mean y: 2557629.0396825396
[2025-10-12 10:41:32] 2025-10-12 14:40:37,056 | INFO     | -- intersect: 7213661519.15208
[2025-10-12 10:41:32] 2025-10-12 14:40:37,057 | INFO     | intersect: 7213661519.15208
[2025-10-12 10:41:32] 2025-10-12 14:40:37,057 | INFO     | chi2: 1.644615001042298
[2025-10-12 10:41:32] 2025-10-12 14:40:37,057 | INFO     | sum of square deviations: 549294020.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,058 | INFO     | sum of deviations: -1939542824.0000052
[2025-10-12 10:41:32] 2025-10-12 14:40:37,058 | INFO     | mean x: 1760276025.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,058 | INFO     | mean y: 2558922.223140496
[2025-10-12 10:41:32] 2025-10-12 14:40:37,058 | INFO     | -- intersect: 6218047546.235476
[2025-10-12 10:41:32] 2025-10-12 14:40:37,058 | INFO     | intersect: 6218047546.235476
[2025-10-12 10:41:32] 2025-10-12 14:40:37,058 | INFO     | chi2: 1.645948885428595
[2025-10-12 10:41:32] 2025-10-12 14:40:37,059 | INFO     | current chi2=1.645948885428595 (change=-0.08110617898120501 %)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,059 | INFO     | right removable region: 120
[2025-10-12 10:41:32] 2025-10-12 14:40:37,059 | INFO     | sum of square deviations: 549294020.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,060 | INFO     | sum of deviations: -21665516582.999996
[2025-10-12 10:41:32] 2025-10-12 14:40:37,060 | INFO     | mean x: 1760276330.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,060 | INFO     | mean y: 2597988.5537190083
[2025-10-12 10:41:32] 2025-10-12 14:40:37,060 | INFO     | -- intersect: 69432256112.77174
[2025-10-12 10:41:32] 2025-10-12 14:40:37,060 | INFO     | intersect: 69432256112.77174
[2025-10-12 10:41:32] 2025-10-12 14:40:37,060 | INFO     | chi2: 0.15956319146055079
[2025-10-12 10:41:32] 2025-10-12 14:40:37,060 | INFO     | current chi2=0.15956319146055079 (change=90.29783922927703 %)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,061 | INFO     | sum of square deviations: 483971865.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,061 | INFO     | sum of deviations: -22594333479.499996
[2025-10-12 10:41:32] 2025-10-12 14:40:37,061 | INFO     | mean x: 1760276482.5
[2025-10-12 10:41:32] 2025-10-12 14:40:37,062 | INFO     | mean y: 2600036.2155172415
[2025-10-12 10:41:32] 2025-10-12 14:40:37,062 | INFO     | -- intersect: 82181496658.08058
[2025-10-12 10:41:32] 2025-10-12 14:40:37,062 | INFO     | intersect: 82181496658.08058
[2025-10-12 10:41:32] 2025-10-12 14:40:37,062 | INFO     | chi2: 0.11877827554250306
[2025-10-12 10:41:32] 2025-10-12 14:40:37,062 | INFO     | current chi2=0.11877827554250306 (change=25.56035357824432 %)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,062 | INFO     | sum of square deviations: 424045160.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,063 | INFO     | sum of deviations: -19661237448.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,063 | INFO     | mean x: 1760276635.0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,063 | INFO     | mean y: 2592553.2882882883
[2025-10-12 10:41:32] 2025-10-12 14:40:37,063 | INFO     | -- intersect: 81619411136.718
[2025-10-12 10:41:32] 2025-10-12 14:40:37,063 | INFO     | intersect: 81619411136.718
[2025-10-12 10:41:32] 2025-10-12 14:40:37,064 | INFO     | chi2: 0.11850821661988564
[2025-10-12 10:41:32] 2025-10-12 14:40:37,064 | INFO     | current chi2=0.11850821661988564 (change=0.2273639025183355 %)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,064 | INFO     | left removable region: 30
[2025-10-12 10:41:32] 2025-10-12 14:40:37,064 | INFO     | sum of square deviations: 226022842.5
[2025-10-12 10:41:32] 2025-10-12 14:40:37,065 | INFO     | sum of deviations: -8125785996.5
[2025-10-12 10:41:32] 2025-10-12 14:40:37,065 | INFO     | mean x: 1760276909.5
[2025-10-12 10:41:32] 2025-10-12 14:40:37,065 | INFO     | mean y: 2560872.811111111
[2025-10-12 10:41:32] 2025-10-12 14:40:37,065 | INFO     | -- intersect: 63286578111.80942
[2025-10-12 10:41:32] 2025-10-12 14:40:37,065 | INFO     | intersect: 63286578111.80942
[2025-10-12 10:41:32] 2025-10-12 14:40:37,065 | INFO     | chi2: 0.09069126733003106
[2025-10-12 10:41:32] 2025-10-12 14:40:37,065 | INFO     | -- intersect: 63286578111.80942
[2025-10-12 10:41:32] 2025-10-12 14:40:37,066 | INFO     | current memory leak: -35.95 B/s (using 90 data points, chi2=0.09)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,066 | INFO     | could have reported an average CPU frequency of 1989 MHz (8 samples)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,066 | INFO     | ..............................
[2025-10-12 10:41:32] 2025-10-12 14:40:37,066 | INFO     | . Timing measurements:
[2025-10-12 10:41:32] 2025-10-12 14:40:37,066 | INFO     | . get job = 0 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,066 | INFO     | . initial setup = 2 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,067 | INFO     | . payload setup = 8 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,067 | INFO     | . stage-in = 0 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,067 | INFO     | . payload execution = 7664 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,067 | INFO     | . stage-out = 0 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,067 | INFO     | . log creation = 0 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,067 | INFO     | ..............................
[2025-10-12 10:41:32] 2025-10-12 14:40:37,162 | INFO     | 
[2025-10-12 10:41:32] 2025-10-12 14:40:37,163 | INFO     | job summary report
[2025-10-12 10:41:32] 2025-10-12 14:40:37,163 | INFO     | --------------------------------------------------
[2025-10-12 10:41:32] 2025-10-12 14:40:37,163 | INFO     | PanDA job id: 6839660213
[2025-10-12 10:41:32] 2025-10-12 14:40:37,163 | INFO     | task id: 46676269
[2025-10-12 10:41:32] 2025-10-12 14:40:37,163 | INFO     | errors: (none)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:41:32] 2025-10-12 14:40:37,164 | INFO     | pilot state: finished 
[2025-10-12 10:41:32] 2025-10-12 14:40:37,164 | INFO     | transexitcode: 0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,164 | INFO     | exeerrorcode: 0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,164 | INFO     | exeerrordiag: 
[2025-10-12 10:41:32] 2025-10-12 14:40:37,164 | INFO     | exitcode: 0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,164 | INFO     | exitmsg: OK
[2025-10-12 10:41:32] 2025-10-12 14:40:37,165 | INFO     | cpuconsumptiontime: 54846 s
[2025-10-12 10:41:32] 2025-10-12 14:40:37,165 | INFO     | nevents: 400
[2025-10-12 10:41:32] 2025-10-12 14:40:37,165 | INFO     | neventsw: 0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,165 | INFO     | pid: 12190
[2025-10-12 10:41:32] 2025-10-12 14:40:37,165 | INFO     | pgrp: 12190
[2025-10-12 10:41:32] 2025-10-12 14:40:37,165 | INFO     | corecount: 8
[2025-10-12 10:41:32] 2025-10-12 14:40:37,166 | INFO     | event service: False
[2025-10-12 10:41:32] 2025-10-12 14:40:37,166 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 7676: 2376777, 7677: 2385775, 7680: 2385959, 7685: 2386153}
[2025-10-12 10:41:32] 2025-10-12 14:40:37,166 | INFO     | --------------------------------------------------
[2025-10-12 10:41:32] 2025-10-12 14:40:37,166 | INFO     | 
[2025-10-12 10:41:32] 2025-10-12 14:40:37,166 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 10:41:32] 2025-10-12 14:40:37,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,196 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,196 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:41:32] 2025-10-12 14:40:37,199 | INFO     | job 6839660213 has completed (purged errors)
[2025-10-12 10:41:32] 2025-10-12 14:40:37,199 | INFO     | overall cleanup function is called
[2025-10-12 10:41:32] 2025-10-12 14:40:38,207 | INFO     | --- collectZombieJob: --- 10, [12190]
[2025-10-12 10:41:32] 2025-10-12 14:40:38,208 | INFO     | zombie collector waiting for pid 12190
[2025-10-12 10:41:32] 2025-10-12 14:40:38,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:41:32] 2025-10-12 14:40:38,208 | INFO     | collected zombie processes
[2025-10-12 10:41:32] 2025-10-12 14:40:38,208 | INFO     | will attempt to kill all subprocesses of pid=12190
[2025-10-12 10:41:32] 2025-10-12 14:40:38,301 | INFO     | process IDs to be killed: [12190] (in reverse order)
[2025-10-12 10:41:32] 2025-10-12 14:40:38,360 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:41:32] 2025-10-12 14:40:38,360 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:41:32] 2025-10-12 14:40:38,364 | INFO     | did not find any defunct processes belonging to 12190
[2025-10-12 10:41:32] 2025-10-12 14:40:38,368 | INFO     | did not find any defunct processes belonging to 12190
[2025-10-12 10:41:32] 2025-10-12 14:40:38,369 | INFO     | ready for new job
[2025-10-12 10:41:32] 2025-10-12 14:40:38,369 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:41:32] 2025-10-12 14:40:38,371 | INFO     | ***************************************
[2025-10-12 10:41:32] 2025-10-12 14:40:38,371 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:41:32] 2025-10-12 14:40:38,371 | INFO     | ***************************************
[2025-10-12 10:41:32] 2025-10-12 14:40:38,371 | INFO     | 
[2025-10-12 10:41:32] 2025-10-12 14:40:38,372 | INFO     | architecture information:
[2025-10-12 10:41:32] 2025-10-12 14:40:38,372 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:41:32] 2025-10-12 14:40:38,390 | INFO     | cat /etc/os-release:
[2025-10-12 10:41:32] NAME="CentOS Linux"
[2025-10-12 10:41:32] VERSION="7 (Core)"
[2025-10-12 10:41:32] ID="centos"
[2025-10-12 10:41:32] ID_LIKE="rhel fedora"
[2025-10-12 10:41:32] VERSION_ID="7"
[2025-10-12 10:41:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:41:32] ANSI_COLOR="0;31"
[2025-10-12 10:41:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:41:32] HOME_URL="https://www.centos.org/"
[2025-10-12 10:41:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:41:32] 
[2025-10-12 10:41:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:41:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:41:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:41:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:41:32] 
[2025-10-12 10:41:32] 2025-10-12 14:40:38,391 | INFO     | ***************************************
[2025-10-12 10:41:32] 2025-10-12 14:40:38,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 10:41:32] 2025-10-12 14:40:38,915 | INFO     | sufficient remaining disk space (18554552320 B)
[2025-10-12 10:41:32] 2025-10-12 14:40:38,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:41:32] 2025-10-12 14:40:38,916 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:41:32] 2025-10-12 14:40:38,916 | INFO     | update_server=False
[2025-10-12 10:41:32] 2025-10-12 14:40:38,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:41:32] 2025-10-12 14:40:38,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:41:32] 2025-10-12 14:40:39,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:41:32] 2025-10-12 14:40:39,106 | INFO     | aborting loop
[2025-10-12 10:41:32] 2025-10-12 14:40:39,110 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:41:32] 2025-10-12 14:40:39,151 | INFO     | all data control threads have been joined
[2025-10-12 10:41:32] 2025-10-12 14:40:39,868 | INFO     | all payload control threads have been joined
[2025-10-12 10:41:32] 2025-10-12 14:40:39,922 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:39,922 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:40,045 | INFO     | all job control threads have been joined
[2025-10-12 10:41:32] 2025-10-12 14:40:40,110 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:40,156 | INFO     | [data] control thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:40,220 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:40,598 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:40,609 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:40,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:40,869 | INFO     | [payload] control thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:41,051 | INFO     | [job] control thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:41,092 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:41,116 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:41,267 | INFO     | [job] validate thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:41,276 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:41,428 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:40:42,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:41:32] 2025-10-12 14:40:46,046 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:41:32] 2025-10-12 14:41:09,246 | INFO     | PID=5692 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 10:41:32] 2025-10-12 14:41:09,247 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:41:32] 2025-10-12 14:41:09,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:41:32] 2025-10-12 14:41:09,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:41:32] 2025-10-12 14:41:26,891 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:41:32] 2025-10-12 14:41:26,893 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849951115072)>', '<ExcThread(monitor, started 139849151534848)>']
[2025-10-12 10:41:32] 2025-10-12 14:41:27,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:41:32] 2025-10-12 14:41:27,341 | INFO     | [monitor] control thread has ended
[2025-10-12 10:41:32] 2025-10-12 14:41:31,919 | INFO     | all workflow threads have been joined
[2025-10-12 10:41:32] 2025-10-12 14:41:31,925 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:41:32] 2025-10-12 14:41:31,926 | INFO     | traces error code: 0
[2025-10-12 10:41:32] 2025-10-12 14:41:31,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:41:32] 2025-10-12 14:41:32,040 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:41:32] 2025-10-12 14:41:32,044 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:41:32] 2025-10-12 14:41:32,049 [wrapper] pilotpid: 5692
[2025-10-12 10:41:32] 2025-10-12 14:41:32,053 [wrapper] Pilot exit status: 0
[2025-10-12 10:41:32] 2025-10-12 14:41:32,073 [wrapper] pandaids: 6839660213
[2025-10-12 10:41:32] 2025-10-12 14:41:32,131 [wrapper] cleanup supervisor_pilot  3044 5693
[2025-10-12 10:41:32] 2025-10-12 14:41:32,136 [wrapper] Test setup, not cleaning
[2025-10-12 10:41:32] 2025-10-12 14:41:32,141 [wrapper] apfmon messages muted
[2025-10-12 10:41:32] 2025-10-12 14:41:32,146 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:41:32] 2025-10-12 14:41:32,150 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:41:32]  *** Error codes and diagnostics ***
[2025-10-12 10:41:32]     "exeErrorCode": 0,
[2025-10-12 10:41:32]     "exeErrorDiag": "",
[2025-10-12 10:41:32]     "pilotErrorCode": 0,
[2025-10-12 10:41:32]     "pilotErrorDiag": "",
[2025-10-12 10:41:32]  *** Listing of results directory ***
[2025-10-12 10:41:32] total 412656
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 03:48 queuedata.json
[2025-10-12 10:41:32] -rwx------ 1 boincer umatlas     36292 Oct 12 03:50 runpilot2-wrapper.sh
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas       100 Oct 12 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:41:32] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 08:31 run_atlas
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas       105 Oct 12 08:31 job.xml
[2025-10-12 10:41:32] -rw-r--r-- 2 boincer umatlas 220404103 Oct 12 08:31 EVNT.46676267._003517.pool.root.1
[2025-10-12 10:41:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:31 start_atlas.sh
[2025-10-12 10:41:32] drwxrwx--x 2 boincer umatlas      4096 Oct 12 08:31 shared
[2025-10-12 10:41:32] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 08:31 input.tar.gz
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas         0 Oct 12 08:31 boinc_lockfile
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 08:31 pandaJob.out
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas    975512 Oct 12 08:32 agis_schedconf.cvmfs.json
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas   1560580 Oct 12 08:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:41:32] drwx------ 5 boincer umatlas      4096 Oct 12 08:32 pilot3
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas      5909 Oct 12 10:38 init_data.xml
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas 195322945 Oct 12 10:39 HITS.46676269._073906.pool.root.1
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas       530 Oct 12 10:39 boinc_task_state.xml
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas      1048 Oct 12 10:40 memory_monitor_summary.json
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas    378301 Oct 12 10:40 log.46676269._073906.job.log.tgz.1
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas      7847 Oct 12 10:40 heartbeat.json
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas        95 Oct 12 10:41 pilot_heartbeat.json
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 10:41 boinc_mmap_file
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas        27 Oct 12 10:41 wrapper_checkpoint.txt
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas      4745 Oct 12 10:41 pilotlog.txt
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas   1085110 Oct 12 10:41 log.46676269._073906.job.log.1
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas       357 Oct 12 10:41 output.list
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas       620 Oct 12 10:41 runtime_log
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas   1484800 Oct 12 10:41 result.tar.gz
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 10:41 runtime_log.err
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas       659 Oct 12 10:41 5LZKDmk15R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmn4iNDmvN8mMm.diag
[2025-10-12 10:41:32] -rw-r--r-- 1 boincer umatlas     20857 Oct 12 10:41 stderr.txt
[2025-10-12 10:41:32] HITS file was successfully produced:
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas 195322945 Oct 12 10:39 shared/HITS.pool.root.1
[2025-10-12 10:41:32]  *** Contents of shared directory: ***
[2025-10-12 10:41:32] total 408020
[2025-10-12 10:41:32] -rw-r--r-- 2 boincer umatlas 220404103 Oct 12 08:31 ATLAS.root_0
[2025-10-12 10:41:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:31 start_atlas.sh
[2025-10-12 10:41:32] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 08:31 input.tar.gz
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas 195322945 Oct 12 10:39 HITS.pool.root.1
[2025-10-12 10:41:32] -rw------- 1 boincer umatlas   1484800 Oct 12 10:41 result.tar.gz
10:41:33 (1857): run_atlas exited; CPU time 54876.792677
10:41:33 (1857): called boinc_finish(0)

</stderr_txt>
]]>

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