Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:30:23 (3951770): wrapper (7.7.26015): starting
01:30:23 (3951770): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 01:30:23] Arguments: --nthreads 6
[2025-10-13 01:30:23] Threads: 6
[2025-10-13 01:30:23] Checking for CVMFS
[2025-10-13 01:30:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:30:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:30:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:30:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:30:24] 2.11.5.0 3651556 4541 72912 151625 1 188 38742792 52428800 1858 130560 0 14193423 99.998 153997 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 01:30:24] CVMFS is ok
[2025-10-13 01:30:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:30:24] Checking for apptainer binary...
[2025-10-13 01:30:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:30:24] Running /usr/bin/apptainer --version
[2025-10-13 01:30:24] apptainer version 1.3.5-1.el9
[2025-10-13 01:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:30:24] testio008
[2025-10-13 01:30:24] apptainer works
[2025-10-13 01:30:24] Set ATHENA_PROC_NUMBER=6
[2025-10-13 01:30:24] Set ATHENA_CORE_NUMBER=6
[2025-10-13 01:30:24] Starting ATLAS job with PandaID=6839660112
[2025-10-13 01:30:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:39:48]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:39:48] 2025-10-12 17:38:55,558 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 02:39:48] 2025-10-12 17:38:55,558 | INFO     | log transfer has been attempted: DONE
[2025-10-13 02:39:48] 2025-10-12 17:38:55,558 | INFO     | job 6839660112 has finished - writing final server update
[2025-10-13 02:39:48] 2025-10-12 17:38:55,558 | INFO     | total number of processed events: 400 (read)
[2025-10-13 02:39:48] 2025-10-12 17:38:55,558 | INFO     | executing command: lscpu
[2025-10-13 02:39:48] 2025-10-12 17:38:55,570 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 02:39:48] 2025-10-12 17:38:57,466 | INFO     | time since job start (4105s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:38:58,001 | INFO     | monitor loop #300: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:38:58,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:38:59,471 | INFO     | time since job start (4107s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:00,504 | INFO     | monitor loop #301: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:39:00,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:39:00,523 | INFO     | PID=3955539 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:39:48] 2025-10-12 17:39:00,523 | INFO     | .. there are 3 such processes running
[2025-10-13 02:39:48] 2025-10-12 17:39:01,524 | INFO     | time since job start (4109s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:03,007 | INFO     | monitor loop #302: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:39:03,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:39:03,529 | INFO     | time since job start (4111s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:05,510 | INFO     | monitor loop #303: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:39:05,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:39:05,534 | INFO     | time since job start (4113s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:07,539 | INFO     | time since job start (4115s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:08,013 | INFO     | monitor loop #304: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:39:08,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:39:09,544 | INFO     | time since job start (4117s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:10,516 | INFO     | monitor loop #305: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:39:10,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:39:11,548 | INFO     | time since job start (4119s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:11,548 | INFO     | 4123s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 02:39:48] 2025-10-12 17:39:13,019 | INFO     | monitor loop #306: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:39:13,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:39:13,553 | INFO     | time since job start (4121s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:15,522 | INFO     | monitor loop #307: job 0:6839660112 is in state 'finished'
[2025-10-13 02:39:48] 2025-10-12 17:39:15,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:39:48] 2025-10-12 17:39:15,558 | INFO     | time since job start (4123s) is within the limit (172800.0s)
[2025-10-13 02:39:48] 2025-10-12 17:39:16,894 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 02:39:48] 2025-10-12 17:39:16,897 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 1984.3203500000004
[2025-10-13 02:39:48] 2025-10-12 17:39:16,900 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6839660112/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:39:48] 2025-10-12 17:39:16,901 | INFO     | extracted standard info from prmon json
[2025-10-13 02:39:48] 2025-10-12 17:39:16,901 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 02:39:48] 2025-10-12 17:39:16,901 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 02:39:48] 2025-10-12 17:39:16,901 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 02:39:48] 2025-10-12 17:39:16,901 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 02:39:48] 2025-10-12 17:39:16,903 | INFO     | fitting pss+swap vs Time
[2025-10-13 02:39:48] 2025-10-12 17:39:16,903 | INFO     | sum of square deviations: 66959395.0
[2025-10-13 02:39:48] 2025-10-12 17:39:16,903 | INFO     | sum of deviations: -1858973658.0
[2025-10-13 02:39:48] 2025-10-12 17:39:16,903 | INFO     | mean x: 1760288755.5
[2025-10-13 02:39:48] 2025-10-12 17:39:16,903 | INFO     | mean y: 2486871.533333333
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | -- intersect: 48872857145.16114
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | intersect: 48872857145.16114
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | chi2: 0.024408858276735324
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | -- intersect: 48872857145.16114
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | current memory leak: -27.76 B/s (using 60 data points, chi2=0.02)
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | could have reported an average CPU frequency of 3368 MHz (6 samples)
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | ..............................
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | . Timing measurements:
[2025-10-13 02:39:48] 2025-10-12 17:39:16,904 | INFO     | . get job = 0 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,905 | INFO     | . initial setup = 5 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,905 | INFO     | . payload setup = 2 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,905 | INFO     | . stage-in = 0 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,905 | INFO     | . payload execution = 4083 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,905 | INFO     | . stage-out = 0 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,905 | INFO     | . log creation = 0 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,905 | INFO     | ..............................
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | 
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | job summary report
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | --------------------------------------------------
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | PanDA job id: 6839660112
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | task id: 46676269
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | errors: (none)
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | pilot state: finished 
[2025-10-13 02:39:48] 2025-10-12 17:39:16,992 | INFO     | transexitcode: 0
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | exeerrorcode: 0
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | exeerrordiag: 
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | exitcode: 0
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | exitmsg: OK
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | cpuconsumptiontime: 21572 s
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | nevents: 400
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | neventsw: 0
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | pid: 3962248
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | pgrp: 3962248
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | corecount: 6
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | event service: False
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 4090: 2384045, 4112: 2384183}
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | --------------------------------------------------
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | 
[2025-10-13 02:39:48] 2025-10-12 17:39:16,993 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 02:39:48] 2025-10-12 17:39:17,007 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,008 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | job 6839660112 has completed (purged errors)
[2025-10-13 02:39:48] 2025-10-12 17:39:17,009 | INFO     | overall cleanup function is called
[2025-10-13 02:39:48] 2025-10-12 17:39:18,015 | INFO     | --- collectZombieJob: --- 10, [3962248]
[2025-10-13 02:39:48] 2025-10-12 17:39:18,016 | INFO     | zombie collector waiting for pid 3962248
[2025-10-13 02:39:48] 2025-10-12 17:39:18,016 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:39:48] 2025-10-12 17:39:18,016 | INFO     | collected zombie processes
[2025-10-13 02:39:48] 2025-10-12 17:39:18,016 | INFO     | will attempt to kill all subprocesses of pid=3962248
[2025-10-13 02:39:48] 2025-10-12 17:39:18,087 | INFO     | process IDs to be killed: [3962248] (in reverse order)
[2025-10-13 02:39:48] 2025-10-12 17:39:18,119 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:39:48] 2025-10-12 17:39:18,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:39:48] 2025-10-12 17:39:18,123 | INFO     | did not find any defunct processes belonging to 3962248
[2025-10-13 02:39:48] 2025-10-12 17:39:18,125 | INFO     | did not find any defunct processes belonging to 3962248
[2025-10-13 02:39:48] 2025-10-12 17:39:18,126 | INFO     | ready for new job
[2025-10-13 02:39:48] 2025-10-12 17:39:18,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:39:48] 2025-10-12 17:39:18,127 | INFO     | ***************************************
[2025-10-13 02:39:48] 2025-10-12 17:39:18,127 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:39:48] 2025-10-12 17:39:18,127 | INFO     | ***************************************
[2025-10-13 02:39:48] 2025-10-12 17:39:18,127 | INFO     | 
[2025-10-13 02:39:48] 2025-10-12 17:39:18,128 | INFO     | architecture information:
[2025-10-13 02:39:48] 2025-10-12 17:39:18,128 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:39:48] 2025-10-12 17:39:18,138 | INFO     | cat /etc/os-release:
[2025-10-13 02:39:48] NAME="CentOS Linux"
[2025-10-13 02:39:48] VERSION="7 (Core)"
[2025-10-13 02:39:48] ID="centos"
[2025-10-13 02:39:48] ID_LIKE="rhel fedora"
[2025-10-13 02:39:48] VERSION_ID="7"
[2025-10-13 02:39:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:39:48] ANSI_COLOR="0;31"
[2025-10-13 02:39:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:39:48] HOME_URL="https://www.centos.org/"
[2025-10-13 02:39:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:39:48] 
[2025-10-13 02:39:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:39:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:39:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:39:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:39:48] 
[2025-10-13 02:39:48] 2025-10-12 17:39:18,138 | INFO     | ***************************************
[2025-10-13 02:39:48] 2025-10-12 17:39:18,641 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 02:39:48] 2025-10-12 17:39:18,652 | INFO     | sufficient remaining disk space (280267587584 B)
[2025-10-13 02:39:48] 2025-10-12 17:39:18,653 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:39:48] 2025-10-12 17:39:18,653 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:39:48] 2025-10-12 17:39:18,653 | INFO     | update_server=False
[2025-10-13 02:39:48] 2025-10-12 17:39:18,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:39:48] 2025-10-12 17:39:18,654 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:39:48] 2025-10-12 17:39:18,654 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:39:48] 2025-10-12 17:39:18,753 | INFO     | all data control threads have been joined
[2025-10-13 02:39:48] 2025-10-12 17:39:18,847 | INFO     | all job control threads have been joined
[2025-10-13 02:39:48] 2025-10-12 17:39:19,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:39:48] 2025-10-12 17:39:19,030 | INFO     | aborting loop
[2025-10-13 02:39:48] 2025-10-12 17:39:19,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:39:48] 2025-10-12 17:39:19,658 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:19,659 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:19,758 | INFO     | [data] control thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:19,853 | INFO     | [job] control thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:19,986 | INFO     | all payload control threads have been joined
[2025-10-13 02:39:48] 2025-10-12 17:39:20,034 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,035 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,088 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,102 | INFO     | [job] validate thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,224 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,461 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,470 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,658 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,936 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:20,991 | INFO     | [payload] control thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:23,579 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:29,637 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:39:48] 2025-10-12 17:39:30,643 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:39:48] 2025-10-12 17:39:39,300 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:39:48] 2025-10-12 17:39:41,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791937140544)>', '<ExcThread(monitor, started 139791437911808)>']
[2025-10-13 02:39:48] 2025-10-12 17:39:46,064 | INFO     | all workflow threads have been joined
[2025-10-13 02:39:48] 2025-10-12 17:39:46,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:39:48] 2025-10-12 17:39:46,065 | INFO     | traces error code: 0
[2025-10-13 02:39:48] 2025-10-12 17:39:46,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:39:48] 2025-10-12 17:39:48,670 | INFO     | PID=3955539 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:39:48] 2025-10-12 17:39:48,674 | INFO     | .. there are 3 such processes running
[2025-10-13 02:39:48] 2025-10-12 17:39:48,675 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:39:48] 2025-10-12 17:39:48,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:39:48] 2025-10-12 17:39:48,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:39:48] 2025-10-12 17:39:48,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:39:48] 2025-10-12 17:39:48,675 | INFO     | [monitor] control thread has ended
[2025-10-13 02:39:48] 2025-10-12 17:39:48,738 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:39:48] 2025-10-12 17:39:48,739 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:39:48] 2025-10-12 17:39:48,740 [wrapper] pilotpid: 3955539
[2025-10-13 02:39:48] 2025-10-12 17:39:48,741 [wrapper] Pilot exit status: 0
[2025-10-13 02:39:48] 2025-10-12 17:39:48,745 [wrapper] pandaids: 6839660112
[2025-10-13 02:39:48] 2025-10-12 17:39:48,758 [wrapper] cleanup supervisor_pilot 4020020 3955540
[2025-10-13 02:39:48] 2025-10-12 17:39:48,759 [wrapper] Test setup, not cleaning
[2025-10-13 02:39:48] 2025-10-12 17:39:48,760 [wrapper] apfmon messages muted
[2025-10-13 02:39:48] 2025-10-12 17:39:48,761 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:39:48] 2025-10-12 17:39:48,762 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:39:48]  *** Error codes and diagnostics ***
[2025-10-13 02:39:48]     "exeErrorCode": 0,
[2025-10-13 02:39:48]     "exeErrorDiag": "",
[2025-10-13 02:39:48]     "pilotErrorCode": 0,
[2025-10-13 02:39:48]     "pilotErrorDiag": "",
[2025-10-13 02:39:48]  *** Listing of results directory ***
[2025-10-13 02:39:48] total 409496
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc    557409 Oct 12 15:54 pilot3.tar.gz
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc      5112 Oct 12 16:46 queuedata.json
[2025-10-13 02:39:48] -rwx------. 1 boinc boinc     36292 Oct 12 16:47 runpilot2-wrapper.sh
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc       100 Oct 13 01:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:39:48] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 01:30 run_atlas
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc       105 Oct 13 01:30 job.xml
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc      9509 Oct 13 01:30 init_data.xml
[2025-10-13 02:39:48] -rw-r--r--. 2 boinc boinc 218927512 Oct 13 01:30 EVNT.46676267._003516.pool.root.1
[2025-10-13 02:39:48] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:30 start_atlas.sh
[2025-10-13 02:39:48] drwxrwx--x. 2 boinc boinc        68 Oct 13 01:30 shared
[2025-10-13 02:39:48] -rw-r--r--. 2 boinc boinc    569680 Oct 13 01:30 input.tar.gz
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc         0 Oct 13 01:30 boinc_lockfile
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc      2550 Oct 13 01:30 pandaJob.out
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc    975528 Oct 13 01:30 agis_schedconf.cvmfs.json
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc   1560580 Oct 13 01:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:39:48] drwx------. 5 boinc boinc      4096 Oct 13 01:30 pilot3
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc 194680502 Oct 13 02:38 HITS.46676269._073884.pool.root.1
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc       529 Oct 13 02:38 boinc_task_state.xml
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc      1021 Oct 13 02:38 memory_monitor_summary.json
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc    297125 Oct 13 02:38 log.46676269._073884.job.log.tgz.1
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc        95 Oct 13 02:39 pilot_heartbeat.json
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc      7769 Oct 13 02:39 heartbeat.json
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc        27 Oct 13 02:39 wrapper_checkpoint.txt
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc      8192 Oct 13 02:39 boinc_mmap_file
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc       822 Oct 13 02:39 pilotlog.txt
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc    613550 Oct 13 02:39 log.46676269._073884.job.log.1
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc       357 Oct 13 02:39 output.list
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc       620 Oct 13 02:39 runtime_log
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc    931840 Oct 13 02:39 result.tar.gz
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc      8661 Oct 13 02:39 runtime_log.err
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc       641 Oct 13 02:39 qigLDmIz5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmD3iNDmEb4X2n.diag
[2025-10-13 02:39:48] -rw-r--r--. 1 boinc boinc     21932 Oct 13 02:39 stderr.txt
[2025-10-13 02:39:48] HITS file was successfully produced:
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc 194680502 Oct 13 02:38 shared/HITS.pool.root.1
[2025-10-13 02:39:48]  *** Contents of shared directory: ***
[2025-10-13 02:39:48] total 405408
[2025-10-13 02:39:48] -rw-r--r--. 2 boinc boinc 218927512 Oct 13 01:30 ATLAS.root_0
[2025-10-13 02:39:48] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:30 start_atlas.sh
[2025-10-13 02:39:48] -rw-r--r--. 2 boinc boinc    569680 Oct 13 01:30 input.tar.gz
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc 194680502 Oct 13 02:38 HITS.pool.root.1
[2025-10-13 02:39:48] -rw-------. 1 boinc boinc    931840 Oct 13 02:39 result.tar.gz
02:39:50 (3951770): run_atlas exited; CPU time 21597.041886
02:39:50 (3951770): called boinc_finish(0)

</stderr_txt>
]]>

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