Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:01:49 (3147861): wrapper (7.7.26015): starting
23:01:49 (3147861): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 23:01:49] Arguments: --nthreads 3
[2025-10-12 23:01:49] Threads: 3
[2025-10-12 23:01:49] Checking for CVMFS
[2025-10-12 23:01:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:01:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:01:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:01:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:01:50] 2.9.2.0 1676327 4799 84544 151636 1 57 29598442 36864000 0 130560 0 3872589 99.991 165414 745 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 23:01:50] CVMFS is ok
[2025-10-12 23:01:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:01:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:01:50] Further information can be found at the LHC@home message board.
[2025-10-12 23:01:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:01:50] Checking for apptainer binary...
[2025-10-12 23:01:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:01:50] Running /usr/bin/apptainer --version
[2025-10-12 23:01:50] apptainer version 1.4.1-1.1
[2025-10-12 23:01:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:01:50] atlasA303a
[2025-10-12 23:01:50] apptainer works
[2025-10-12 23:01:50] Set ATHENA_PROC_NUMBER=3
[2025-10-12 23:01:50] Set ATHENA_CORE_NUMBER=3
[2025-10-12 23:01:50] Starting ATLAS job with PandaID=6839660324
[2025-10-12 23:01:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:22:08]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:22:08] 2025-10-12 22:21:28,654 | INFO     | job 6839660324 has completed (purged errors)
[2025-10-13 00:22:08] 2025-10-12 22:21:28,654 | INFO     | overall cleanup function is called
[2025-10-13 00:22:08] 2025-10-12 22:21:29,660 | INFO     | --- collectZombieJob: --- 10, [3158024]
[2025-10-13 00:22:08] 2025-10-12 22:21:29,661 | INFO     | zombie collector waiting for pid 3158024
[2025-10-13 00:22:08] 2025-10-12 22:21:29,661 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:22:08] 2025-10-12 22:21:29,661 | INFO     | collected zombie processes
[2025-10-13 00:22:08] 2025-10-12 22:21:29,661 | INFO     | will attempt to kill all subprocesses of pid=3158024
[2025-10-13 00:22:08] 2025-10-12 22:21:29,702 | INFO     | process IDs to be killed: [3158024] (in reverse order)
[2025-10-13 00:22:08] 2025-10-12 22:21:29,727 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:22:08] 2025-10-12 22:21:29,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:22:08] 2025-10-12 22:21:29,728 | INFO     | did not find any defunct processes belonging to 3158024
[2025-10-13 00:22:08] 2025-10-12 22:21:29,729 | INFO     | did not find any defunct processes belonging to 3158024
[2025-10-13 00:22:08] 2025-10-12 22:21:29,730 | INFO     | ready for new job
[2025-10-13 00:22:08] 2025-10-12 22:21:29,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:22:08] 2025-10-12 22:21:29,730 | INFO     | ***************************************
[2025-10-13 00:22:08] 2025-10-12 22:21:29,730 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:22:08] 2025-10-12 22:21:29,730 | INFO     | ***************************************
[2025-10-13 00:22:08] 2025-10-12 22:21:29,730 | INFO     | 
[2025-10-13 00:22:08] 2025-10-12 22:21:29,731 | INFO     | architecture information:
[2025-10-13 00:22:08] 2025-10-12 22:21:29,731 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:22:08] 2025-10-12 22:21:29,740 | INFO     | cat /etc/os-release:
[2025-10-13 00:22:08] NAME="CentOS Linux"
[2025-10-13 00:22:08] VERSION="7 (Core)"
[2025-10-13 00:22:08] ID="centos"
[2025-10-13 00:22:08] ID_LIKE="rhel fedora"
[2025-10-13 00:22:08] VERSION_ID="7"
[2025-10-13 00:22:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:22:08] ANSI_COLOR="0;31"
[2025-10-13 00:22:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:22:08] HOME_URL="https://www.centos.org/"
[2025-10-13 00:22:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:22:08] 
[2025-10-13 00:22:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:22:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:22:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:22:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:22:08] 
[2025-10-13 00:22:08] 2025-10-12 22:21:29,740 | INFO     | ***************************************
[2025-10-13 00:22:08] 2025-10-12 22:21:30,244 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 00:22:08] 2025-10-12 22:21:30,256 | INFO     | sufficient remaining disk space (375284301824 B)
[2025-10-13 00:22:08] 2025-10-12 22:21:30,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:22:08] 2025-10-12 22:21:30,257 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:22:08] 2025-10-12 22:21:30,257 | INFO     | update_server=False
[2025-10-13 00:22:08] 2025-10-12 22:21:30,257 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:22:08] 2025-10-12 22:21:30,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:22:08] 2025-10-12 22:21:30,430 | INFO     | all data control threads have been joined
[2025-10-13 00:22:08] 2025-10-12 22:21:30,742 | INFO     | all payload control threads have been joined
[2025-10-13 00:22:08] 2025-10-12 22:21:30,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:22:08] 2025-10-12 22:21:31,116 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:22:08] 2025-10-12 22:21:31,116 | INFO     | aborting loop
[2025-10-13 00:22:08] 2025-10-12 22:21:31,258 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:31,261 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:31,289 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:31,329 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:31,436 | INFO     | [data] control thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:31,595 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:31,748 | INFO     | [payload] control thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:31,757 | INFO     | all job control threads have been joined
[2025-10-13 00:22:08] 2025-10-12 22:21:31,973 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:32,122 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:32,226 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:32,394 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:32,499 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:32,690 | INFO     | [job] validate thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:32,763 | INFO     | [job] control thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:32,783 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:21:33,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:22:08] 2025-10-12 22:21:37,311 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:22:08] 2025-10-12 22:22:01,167 | INFO     | PID=3151584 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 00:22:08] 2025-10-12 22:22:01,167 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:22:08] 2025-10-12 22:22:01,167 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:22:08] 2025-10-12 22:22:01,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:22:08] 2025-10-12 22:22:01,879 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:22:08] 2025-10-12 22:22:02,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140087925962560)>', '<ExcThread(monitor, started 140087572543232)>']
[2025-10-13 00:22:08] 2025-10-12 22:22:03,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:22:08] 2025-10-12 22:22:03,178 | INFO     | [monitor] control thread has ended
[2025-10-13 00:22:08] 2025-10-12 22:22:08,007 | INFO     | all workflow threads have been joined
[2025-10-13 00:22:08] 2025-10-12 22:22:08,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:22:08] 2025-10-12 22:22:08,008 | INFO     | traces error code: 0
[2025-10-13 00:22:08] 2025-10-12 22:22:08,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:22:08] 2025-10-12 22:22:08,060 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:22:08] 2025-10-12 22:22:08,062 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:22:08] 2025-10-12 22:22:08,065 [wrapper] pilotpid: 3151584
[2025-10-13 00:22:08] 2025-10-12 22:22:08,067 [wrapper] Pilot exit status: 0
[2025-10-13 00:22:08] 2025-10-12 22:22:08,075 [wrapper] pandaids: 6839660324
[2025-10-13 00:22:08] 2025-10-12 22:22:08,092 [wrapper] cleanup supervisor_pilot 3170137 3151585
[2025-10-13 00:22:08] 2025-10-12 22:22:08,095 [wrapper] Test setup, not cleaning
[2025-10-13 00:22:08] 2025-10-12 22:22:08,097 [wrapper] apfmon messages muted
[2025-10-13 00:22:08] 2025-10-12 22:22:08,099 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:22:08] 2025-10-12 22:22:08,102 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:22:08]  *** Error codes and diagnostics ***
[2025-10-13 00:22:08]     "exeErrorCode": 0,
[2025-10-13 00:22:08]     "exeErrorDiag": "",
[2025-10-13 00:22:08]     "pilotErrorCode": 0,
[2025-10-13 00:22:08]     "pilotErrorDiag": "",
[2025-10-13 00:22:08]  *** Listing of results directory ***
[2025-10-13 00:22:08] total 406472
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc      5112 Oct 12 09:55 queuedata.json
[2025-10-13 00:22:08] -rwx------ 1 boinc boinc     36292 Oct 12 09:56 runpilot2-wrapper.sh
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:22:08] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:01 run_atlas
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:01 job.xml
[2025-10-13 00:22:08] -rw-r--r-- 2 boinc boinc 221961513 Oct 12 23:01 EVNT.46676267._003523.pool.root.1
[2025-10-13 00:22:08] -rw-r--r-- 2 boinc boinc    569682 Oct 12 23:01 input.tar.gz
[2025-10-13 00:22:08] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:01 start_atlas.sh
[2025-10-13 00:22:08] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:01 shared
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:01 boinc_setup_complete
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc      6450 Oct 12 23:01 init_data.xml
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:01 boinc_lockfile
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc      2550 Oct 12 23:01 pandaJob.out
[2025-10-13 00:22:08] -rw------- 1 boinc boinc    975536 Oct 12 23:01 agis_schedconf.cvmfs.json
[2025-10-13 00:22:08] -rw------- 1 boinc boinc   1560580 Oct 12 23:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:22:08] drwx------ 5 boinc boinc      4096 Oct 12 23:01 pilot3
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc       529 Oct 13 00:21 boinc_task_state.xml
[2025-10-13 00:22:08] -rw------- 1 boinc boinc 188488765 Oct 13 00:21 HITS.46676269._074017.pool.root.1
[2025-10-13 00:22:08] -rw------- 1 boinc boinc      1018 Oct 13 00:21 memory_monitor_summary.json
[2025-10-13 00:22:08] -rw------- 1 boinc boinc        95 Oct 13 00:21 pilot_heartbeat.json
[2025-10-13 00:22:08] -rw------- 1 boinc boinc    240200 Oct 13 00:21 log.46676269._074017.job.log.tgz.1
[2025-10-13 00:22:08] -rw------- 1 boinc boinc      7758 Oct 13 00:21 heartbeat.json
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc      8192 Oct 13 00:22 boinc_mmap_file
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc        27 Oct 13 00:22 wrapper_checkpoint.txt
[2025-10-13 00:22:08] -rw------- 1 boinc boinc      4752 Oct 13 00:22 pilotlog.txt
[2025-10-13 00:22:08] -rw------- 1 boinc boinc    703320 Oct 13 00:22 log.46676269._074017.job.log.1
[2025-10-13 00:22:08] -rw------- 1 boinc boinc       357 Oct 13 00:22 output.list
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc       620 Oct 13 00:22 runtime_log
[2025-10-13 00:22:08] -rw------- 1 boinc boinc    962560 Oct 13 00:22 result.tar.gz
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc      8797 Oct 13 00:22 runtime_log.err
[2025-10-13 00:22:08] -rw------- 1 boinc boinc       662 Oct 13 00:22 kmkKDmI75R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmN6iNDmD7I7Xn.diag
[2025-10-13 00:22:08] -rw-r--r-- 1 boinc boinc     12250 Oct 13 00:22 stderr.txt
[2025-10-13 00:22:08] HITS file was successfully produced:
[2025-10-13 00:22:08] -rw------- 1 boinc boinc 188488765 Oct 13 00:21 shared/HITS.pool.root.1
[2025-10-13 00:22:08]  *** Contents of shared directory: ***
[2025-10-13 00:22:08] total 402356
[2025-10-13 00:22:08] -rw-r--r-- 2 boinc boinc 221961513 Oct 12 23:01 ATLAS.root_0
[2025-10-13 00:22:08] -rw-r--r-- 2 boinc boinc    569682 Oct 12 23:01 input.tar.gz
[2025-10-13 00:22:08] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:01 start_atlas.sh
[2025-10-13 00:22:08] -rw------- 1 boinc boinc 188488765 Oct 13 00:21 HITS.pool.root.1
[2025-10-13 00:22:08] -rw------- 1 boinc boinc    962560 Oct 13 00:22 result.tar.gz
00:22:09 (3147861): run_atlas exited; CPU time 13650.465045
00:22:09 (3147861): called boinc_finish(0)

</stderr_txt>
]]>

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