Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
16:16:00 (4503): wrapper (7.7.26015): starting
16:16:00 (4503): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:16:00] Arguments: --nthreads 8
[2025-10-12 16:16:00] Threads: 8
[2025-10-12 16:16:00] Checking for CVMFS
[2025-10-12 16:16:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:16:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:16:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:16:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:16:01] 2.11.0.0 4363 586 42312 151623 2 19 325847 4096001 291 130560 0 45837 98.385 87007 813 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 16:16:01] CVMFS is ok
[2025-10-12 16:16:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:16:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:16:01] Further information can be found at the LHC@home message board.
[2025-10-12 16:16:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:16:01] Checking for apptainer binary...
[2025-10-12 16:16:01] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 16:16:01] apptainer is not installed, using version from CVMFS
[2025-10-12 16:16:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:16:02] WARNING: Environment variable TMPDIR already has value [/tmp/job_10511257/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node197
[2025-10-12 16:16:02] apptainer works
[2025-10-12 16:16:02] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:16:02] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:16:02] Starting ATLAS job with PandaID=6839660245
[2025-10-12 16:16:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10511257/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:10:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:10:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 17:10:21]  replicas=None
[2025-10-12 17:10:21]  scope=mc23_13p6TeV
[2025-10-12 17:10:21]  status=None
[2025-10-12 17:10:21]  status_code=0
[2025-10-12 17:10:21]  storage_token=
[2025-10-12 17:10:21]  surl=/tmp/job_10511257/atlas/pilot/slots/0/PanDA_Pilot-6839660245/log.46676269._073938.job.log.tgz.1
[2025-10-12 17:10:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/92/log.46676269._073938.job.log.tgz.1
[2025-10-12 17:10:21]  workdir=None
[2025-10-12 17:10:21] ]
[2025-10-12 17:10:21] 2025-10-12 15:09:44,643 | INFO     | transferring file log.46676269._073938.job.log.tgz.1 from /tmp/job_10511257/atlas/pilot/slots/0/PanDA_Pilot-6839660245/log.46676269._073938.job.log.tgz.1 to /tmp/j
[2025-10-12 17:10:21] 2025-10-12 15:09:44,643 | INFO     | executing command: /usr/bin/env mv /tmp/job_10511257/atlas/pilot/slots/0/PanDA_Pilot-6839660245/log.46676269._073938.job.log.tgz.1 /tmp/job_10511257/atlas/pilot/sl
[2025-10-12 17:10:21] 2025-10-12 15:09:44,651 | INFO     | adding to output.list: log.46676269._073938.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/92/log.46676269._073938.job.log.tg
[2025-10-12 17:10:21] 2025-10-12 15:09:44,651 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:10:21] 2025-10-12 15:09:44,651 | INFO     | summary of transferred files:
[2025-10-12 17:10:21] 2025-10-12 15:09:44,651 | INFO     |  -- lfn=log.46676269._073938.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:10:21] 2025-10-12 15:09:44,651 | INFO     | stage-out finished correctly
[2025-10-12 17:10:21] 2025-10-12 15:09:45,289 | WARNING  | process 11625 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:10:21] 2025-10-12 15:09:45,289 | INFO     | using path: /tmp/job_10511257/atlas/pilot/slots/0/PanDA_Pilot-6839660245/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:10:21] 2025-10-12 15:09:45,391 | INFO     | number of running child processes to parent process 11625: 1
[2025-10-12 17:10:21] 2025-10-12 15:09:45,391 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:10:21] 2025-10-12 15:09:46,537 | INFO     | time since job start (3220s) is within the limit (172800.0s)
[2025-10-12 17:10:21] 2025-10-12 15:09:46,751 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:10:21] 2025-10-12 15:09:47,894 | INFO     | monitor loop #251: job 0:6839660245 is in state 'finished'
[2025-10-12 17:10:21] 2025-10-12 15:09:47,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:10:21] 2025-10-12 15:09:48,159 | INFO     | job 6839660245 has state=finished
[2025-10-12 17:10:21] 2025-10-12 15:09:48,159 | INFO     | preparing for final server update for job 6839660245 in state='finished'
[2025-10-12 17:10:21] 2025-10-12 15:09:48,160 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:10:21] 2025-10-12 15:09:48,160 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:10:21] 2025-10-12 15:09:48,160 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:10:21] 2025-10-12 15:09:48,160 | INFO     | job 6839660245 has finished - writing final server update
[2025-10-12 17:10:21] 2025-10-12 15:09:48,160 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:10:21] 2025-10-12 15:09:48,160 | INFO     | executing command: lscpu
[2025-10-12 17:10:21] 2025-10-12 15:09:48,192 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:10:21] 2025-10-12 15:09:48,542 | INFO     | time since job start (3222s) is within the limit (172800.0s)
[2025-10-12 17:10:21] 2025-10-12 15:09:49,935 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:10:21] 2025-10-12 15:09:49,939 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2911.115453125
[2025-10-12 17:10:21] 2025-10-12 15:09:49,944 | INFO     | using path: /tmp/job_10511257/atlas/pilot/slots/0/PanDA_Pilot-6839660245/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:10:21] 2025-10-12 15:09:49,945 | INFO     | extracted standard info from prmon json
[2025-10-12 17:10:21] 2025-10-12 15:09:49,945 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:10:21] 2025-10-12 15:09:49,945 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:10:21] 2025-10-12 15:09:49,945 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:10:21] 2025-10-12 15:09:49,945 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | sum of deviations: 7364354686.0
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | mean x: 1760280264.0
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | mean y: 2450071.488888889
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | -- intersect: -459000070992.12213
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | intersect: -459000070992.12213
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | chi2: 0.8897244780348995
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | -- intersect: -459000070992.12213
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | current memory leak: 260.76 B/s (using 45 data points, chi2=0.89)
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | could have reported an average CPU frequency of 2789 MHz (5 samples)
[2025-10-12 17:10:21] 2025-10-12 15:09:49,946 | INFO     | ..............................
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . Timing measurements:
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . get job = 0 s
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . initial setup = 1 s
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . payload setup = 34 s
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . stage-in = 0 s
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . payload execution = 3166 s
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . stage-out = 0 s
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | . log creation = 0 s
[2025-10-12 17:10:21] 2025-10-12 15:09:49,947 | INFO     | ..............................
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | 
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | job summary report
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | --------------------------------------------------
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | PanDA job id: 6839660245
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | task id: 46676269
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | errors: (none)
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | pilot state: finished 
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | transexitcode: 0
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | exeerrorcode: 0
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | exeerrordiag: 
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | exitcode: 0
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | exitmsg: OK
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | cpuconsumptiontime: 19559 s
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | nevents: 400
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | neventsw: 0
[2025-10-12 17:10:21] 2025-10-12 15:09:50,027 | INFO     | pid: 11625
[2025-10-12 17:10:21] 2025-10-12 15:09:50,028 | INFO     | pgrp: 11625
[2025-10-12 17:10:21] 2025-10-12 15:09:50,028 | INFO     | corecount: 8
[2025-10-12 17:10:21] 2025-10-12 15:09:50,028 | INFO     | event service: False
[2025-10-12 17:10:21] 2025-10-12 15:09:50,028 | INFO     | sizes: {0: 2348982, 2: 2349244, 11: 2349272, 3204: 2374733, 3206: 2383761, 3208: 2383817, 3211: 2384171}
[2025-10-12 17:10:21] 2025-10-12 15:09:50,028 | INFO     | --------------------------------------------------
[2025-10-12 17:10:21] 2025-10-12 15:09:50,028 | INFO     | 
[2025-10-12 17:10:21] 2025-10-12 15:09:50,028 | INFO     | executing command: ls -lF /tmp/job_10511257/atlas/pilot/slots/0
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | job 6839660245 has completed (purged errors)
[2025-10-12 17:10:21] 2025-10-12 15:09:50,037 | INFO     | overall cleanup function is called
[2025-10-12 17:10:21] 2025-10-12 15:09:51,043 | INFO     | --- collectZombieJob: --- 10, [11625]
[2025-10-12 17:10:21] 2025-10-12 15:09:51,043 | INFO     | zombie collector waiting for pid 11625
[2025-10-12 17:10:21] 2025-10-12 15:09:51,043 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:10:21] 2025-10-12 15:09:51,044 | INFO     | collected zombie processes
[2025-10-12 17:10:21] 2025-10-12 15:09:51,044 | INFO     | will attempt to kill all subprocesses of pid=11625
[2025-10-12 17:10:21] 2025-10-12 15:09:51,151 | INFO     | process IDs to be killed: [11625] (in reverse order)
[2025-10-12 17:10:21] 2025-10-12 15:09:51,190 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:10:21] 2025-10-12 15:09:51,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:10:21] 2025-10-12 15:09:51,194 | INFO     | did not find any defunct processes belonging to 11625
[2025-10-12 17:10:21] 2025-10-12 15:09:51,197 | INFO     | did not find any defunct processes belonging to 11625
[2025-10-12 17:10:21] 2025-10-12 15:09:51,197 | INFO     | ready for new job
[2025-10-12 17:10:21] 2025-10-12 15:09:51,197 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:10:21] 2025-10-12 15:09:51,197 | INFO     | ***************************************
[2025-10-12 17:10:21] 2025-10-12 15:09:51,198 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:10:21] 2025-10-12 15:09:51,198 | INFO     | ***************************************
[2025-10-12 17:10:21] 2025-10-12 15:09:51,198 | INFO     | 
[2025-10-12 17:10:21] 2025-10-12 15:09:51,212 | INFO     | architecture information:
[2025-10-12 17:10:21] 2025-10-12 15:09:51,212 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:10:21] 2025-10-12 15:09:51,218 | INFO     | cat /etc/os-release:
[2025-10-12 17:10:21] NAME="CentOS Linux"
[2025-10-12 17:10:21] VERSION="7 (Core)"
[2025-10-12 17:10:21] ID="centos"
[2025-10-12 17:10:21] ID_LIKE="rhel fedora"
[2025-10-12 17:10:21] VERSION_ID="7"
[2025-10-12 17:10:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:10:21] ANSI_COLOR="0;31"
[2025-10-12 17:10:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:10:21] HOME_URL="https://www.centos.org/"
[2025-10-12 17:10:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:10:21] 
[2025-10-12 17:10:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:10:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:10:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:10:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:10:21] 
[2025-10-12 17:10:21] 2025-10-12 15:09:51,218 | INFO     | ***************************************
[2025-10-12 17:10:21] 2025-10-12 15:09:51,720 | INFO     | executing command: df -mP /tmp/job_10511257/atlas/pilot/slots/0
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | INFO     | sufficient remaining disk space (226381266944 B)
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | INFO     | update_server=False
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:10:21] 2025-10-12 15:09:51,727 | INFO     | aborting loop
[2025-10-12 17:10:21] 2025-10-12 15:09:52,038 | INFO     | all payload control threads have been joined
[2025-10-12 17:10:21] 2025-10-12 15:09:52,524 | INFO     | all data control threads have been joined
[2025-10-12 17:10:21] 2025-10-12 15:09:52,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:10:21] 2025-10-12 15:09:52,732 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:52,732 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:52,733 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:52,779 | INFO     | all job control threads have been joined
[2025-10-12 17:10:21] 2025-10-12 15:09:52,792 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:52,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:10:21] 2025-10-12 15:09:52,905 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:53,043 | INFO     | [payload] control thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:53,150 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:53,431 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:53,529 | INFO     | [data] control thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:53,753 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:53,784 | INFO     | [job] control thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:54,079 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:54,226 | INFO     | [job] validate thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:54,719 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:09:56,809 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:10:02,496 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:10:21] 2025-10-12 15:10:03,501 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:10:21] 2025-10-12 15:10:11,276 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:10:21] 2025-10-12 15:10:11,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-12 17:10:21] 2025-10-12 15:10:16,715 | INFO     | all workflow threads have been joined
[2025-10-12 17:10:21] 2025-10-12 15:10:16,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:10:21] 2025-10-12 15:10:16,715 | INFO     | traces error code: 0
[2025-10-12 17:10:21] 2025-10-12 15:10:16,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:10:21] 2025-10-12 15:10:21,741 | INFO     | PID=9398 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 17:10:21] 2025-10-12 15:10:21,741 | INFO     | .. there are 5 such processes running
[2025-10-12 17:10:21] 2025-10-12 15:10:21,741 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:10:21] 2025-10-12 15:10:21,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:10:21] 2025-10-12 15:10:21,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:10:21] 2025-10-12 15:10:21,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:10:21] 2025-10-12 15:10:21,741 | INFO     | [monitor] control thread has ended
[2025-10-12 17:10:21] 2025-10-12 15:10:21,794 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:10:21] 2025-10-12 15:10:21,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:10:21] 2025-10-12 15:10:21,797 [wrapper] pilotpid: 9398
[2025-10-12 17:10:21] 2025-10-12 15:10:21,798 [wrapper] Pilot exit status: 0
[2025-10-12 17:10:21] 2025-10-12 15:10:21,802 [wrapper] pandaids: 6839660245
[2025-10-12 17:10:21] 2025-10-12 15:10:21,825 [wrapper] cleanup supervisor_pilot  3464 9399
[2025-10-12 17:10:21] 2025-10-12 15:10:21,826 [wrapper] Test setup, not cleaning
[2025-10-12 17:10:21] 2025-10-12 15:10:21,827 [wrapper] apfmon messages muted
[2025-10-12 17:10:21] 2025-10-12 15:10:21,828 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:10:21] 2025-10-12 15:10:21,829 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:10:21]  *** Error codes and diagnostics ***
[2025-10-12 17:10:21]     "exeErrorCode": 0,
[2025-10-12 17:10:21]     "exeErrorDiag": "",
[2025-10-12 17:10:21]     "pilotErrorCode": 0,
[2025-10-12 17:10:21]     "pilotErrorDiag": "",
[2025-10-12 17:10:21]  *** Listing of results directory ***
[2025-10-12 17:10:21] total 410536
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user      5112 Oct 12 09:50 queuedata.json
[2025-10-12 17:10:21] -rwx------ 1 mf493845 unix-user     36292 Oct 12 09:51 runpilot2-wrapper.sh
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user       100 Oct 12 15:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:10:21] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 15:19 run_atlas
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user       105 Oct 12 15:19 job.xml
[2025-10-12 17:10:21] -rw-r--r-- 2 mf493845 unix-user 220886352 Oct 12 16:16 EVNT.46676267._003518.pool.root.1
[2025-10-12 17:10:21] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 16:16 start_atlas.sh
[2025-10-12 17:10:21] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 16:16 shared
[2025-10-12 17:10:21] -rw-r--r-- 2 mf493845 unix-user    569681 Oct 12 16:16 input.tar.gz
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user      6394 Oct 12 16:16 init_data.xml
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user         0 Oct 12 16:16 boinc_setup_complete
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user      8192 Oct 12 16:16 boinc_mmap_file
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user         0 Oct 12 16:16 boinc_lockfile
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user      2549 Oct 12 16:16 pandaJob.out
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user    975528 Oct 12 16:16 agis_schedconf.cvmfs.json
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user   1560580 Oct 12 16:16 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:10:21] drwx------ 5 mf493845 unix-user       440 Oct 12 16:16 pilot3
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user 193986290 Oct 12 17:09 HITS.46676269._073938.pool.root.1
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user      1015 Oct 12 17:09 memory_monitor_summary.json
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user    317602 Oct 12 17:09 log.46676269._073938.job.log.tgz.1
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user        95 Oct 12 17:09 pilot_heartbeat.json
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user      7776 Oct 12 17:09 heartbeat.json
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user       819 Oct 12 17:10 pilotlog.txt
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user    504780 Oct 12 17:10 log.46676269._073938.job.log.1
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user       357 Oct 12 17:10 output.list
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user       620 Oct 12 17:10 runtime_log
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user    839680 Oct 12 17:10 result.tar.gz
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user      9076 Oct 12 17:10 runtime_log.err
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user       642 Oct 12 17:10 BTWKDmj25R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5TTMDmU8zlim.diag
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user     22327 Oct 12 17:10 stderr.txt
[2025-10-12 17:10:21] HITS file was successfully produced:
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user 193986290 Oct 12 17:09 shared/HITS.pool.root.1
[2025-10-12 17:10:21]  *** Contents of shared directory: ***
[2025-10-12 17:10:21] total 406548
[2025-10-12 17:10:21] -rw-r--r-- 2 mf493845 unix-user 220886352 Oct 12 16:16 ATLAS.root_0
[2025-10-12 17:10:21] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 16:16 start_atlas.sh
[2025-10-12 17:10:21] -rw-r--r-- 2 mf493845 unix-user    569681 Oct 12 16:16 input.tar.gz
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user 193986290 Oct 12 17:09 HITS.pool.root.1
[2025-10-12 17:10:21] -rw------- 1 mf493845 unix-user    839680 Oct 12 17:10 result.tar.gz
17:10:23 (4503): run_atlas exited; CPU time 19605.415348
17:10:23 (4503): called boinc_finish(0)

</stderr_txt>
]]>

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