Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:24:01 (18636): wrapper (7.7.26015): starting
08:24:01 (18636): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 08:24:01] Arguments: --nthreads 8
[2025-10-12 08:24:01] Threads: 8
[2025-10-12 08:24:01] Checking for CVMFS
[2025-10-12 08:24:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:24:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:24:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:24:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:24:01] 2.11.2.0 2847 8495 75228 151620 3 56 12324707 20275200 1 130560 0 5116319 99.988 285560 31428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:24:01] CVMFS is ok
[2025-10-12 08:24:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:24:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:24:01] Further information can be found at the LHC@home message board.
[2025-10-12 08:24:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:24:01] Checking for apptainer binary...
[2025-10-12 08:24:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:24:01] Running /usr/bin/apptainer --version
[2025-10-12 08:24:01] apptainer version 1.3.2-1.el7
[2025-10-12 08:24:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:24:03] c-204-19.aglt2.org
[2025-10-12 08:24:03] apptainer works
[2025-10-12 08:24:03] Set ATHENA_PROC_NUMBER=8
[2025-10-12 08:24:03] Set ATHENA_CORE_NUMBER=8
[2025-10-12 08:24:03] Starting ATLAS job with PandaID=6839659726
[2025-10-12 08:24:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:28:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:28:39] 2025-10-12 14:27:41,741 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:28:39] 2025-10-12 14:27:41,741 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:28:39] 2025-10-12 14:27:41,745 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:28:39] 2025-10-12 14:27:41,745 | INFO     | sum of square deviations: 549294020.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,746 | INFO     | sum of deviations: -2502609302.0000024
[2025-10-12 10:28:39] 2025-10-12 14:27:41,746 | INFO     | mean x: 1760275552.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,746 | INFO     | mean y: 2584043.487603306
[2025-10-12 10:28:39] 2025-10-12 14:27:41,746 | INFO     | -- intersect: 8022481967.223217
[2025-10-12 10:28:39] 2025-10-12 14:27:41,746 | INFO     | intersect: 8022481967.223217
[2025-10-12 10:28:39] 2025-10-12 14:27:41,746 | INFO     | chi2: 1.6400570026938088
[2025-10-12 10:28:39] 2025-10-12 14:27:41,747 | INFO     | sum of square deviations: 483971865.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,747 | INFO     | sum of deviations: -1636047816.0000026
[2025-10-12 10:28:39] 2025-10-12 14:27:41,747 | INFO     | mean x: 1760275399.5
[2025-10-12 10:28:39] 2025-10-12 14:27:41,748 | INFO     | mean y: 2586067.7586206896
[2025-10-12 10:28:39] 2025-10-12 14:27:41,748 | INFO     | -- intersect: 5953127682.219013
[2025-10-12 10:28:39] 2025-10-12 14:27:41,748 | INFO     | intersect: 5953127682.219013
[2025-10-12 10:28:39] 2025-10-12 14:27:41,748 | INFO     | chi2: 1.6422027439770386
[2025-10-12 10:28:39] 2025-10-12 14:27:41,748 | INFO     | current chi2=1.6422027439770386 (change=-0.13083333565268473 %)
[2025-10-12 10:28:39] 2025-10-12 14:27:41,748 | INFO     | right removable region: 115
[2025-10-12 10:28:39] 2025-10-12 14:27:41,749 | INFO     | sum of square deviations: 483971865.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,749 | INFO     | sum of deviations: -21237239944.499992
[2025-10-12 10:28:39] 2025-10-12 14:27:41,749 | INFO     | mean x: 1760275704.5
[2025-10-12 10:28:39] 2025-10-12 14:27:41,749 | INFO     | mean y: 2626972.5603448274
[2025-10-12 10:28:39] 2025-10-12 14:27:41,750 | INFO     | -- intersect: 77245541712.94565
[2025-10-12 10:28:39] 2025-10-12 14:27:41,750 | INFO     | intersect: 77245541712.94565
[2025-10-12 10:28:39] 2025-10-12 14:27:41,750 | INFO     | chi2: 0.14475278360675553
[2025-10-12 10:28:39] 2025-10-12 14:27:41,750 | INFO     | current chi2=0.14475278360675553 (change=91.17391753036647 %)
[2025-10-12 10:28:39] 2025-10-12 14:27:41,750 | INFO     | sum of square deviations: 424045160.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,751 | INFO     | sum of deviations: -22424991105.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,751 | INFO     | mean x: 1760275857.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,751 | INFO     | mean y: 2629861.4684684686
[2025-10-12 10:28:39] 2025-10-12 14:27:41,751 | INFO     | -- intersect: 93092173521.32596
[2025-10-12 10:28:39] 2025-10-12 14:27:41,751 | INFO     | intersect: 93092173521.32596
[2025-10-12 10:28:39] 2025-10-12 14:27:41,752 | INFO     | chi2: 0.09634324712326078
[2025-10-12 10:28:39] 2025-10-12 14:27:41,752 | INFO     | current chi2=0.09634324712326078 (change=33.442905398632696 %)
[2025-10-12 10:28:39] 2025-10-12 14:27:41,752 | INFO     | sum of square deviations: 369281342.5
[2025-10-12 10:28:39] 2025-10-12 14:27:41,752 | INFO     | sum of deviations: -20023353791.5
[2025-10-12 10:28:39] 2025-10-12 14:27:41,753 | INFO     | mean x: 1760276009.5
[2025-10-12 10:28:39] 2025-10-12 14:27:41,753 | INFO     | mean y: 2623154.5
[2025-10-12 10:28:39] 2025-10-12 14:27:41,753 | INFO     | -- intersect: 95449170955.40417
[2025-10-12 10:28:39] 2025-10-12 14:27:41,753 | INFO     | intersect: 95449170955.40417
[2025-10-12 10:28:39] 2025-10-12 14:27:41,753 | INFO     | chi2: 0.09561679949897875
[2025-10-12 10:28:39] 2025-10-12 14:27:41,753 | INFO     | current chi2=0.09561679949897875 (change=0.7540202826593779 %)
[2025-10-12 10:28:39] 2025-10-12 14:27:41,753 | INFO     | left removable region: 30
[2025-10-12 10:28:39] 2025-10-12 14:27:41,754 | INFO     | sum of square deviations: 190403570.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,754 | INFO     | sum of deviations: -10603393075.999998
[2025-10-12 10:28:39] 2025-10-12 14:27:41,754 | INFO     | mean x: 1760276284.0
[2025-10-12 10:28:39] 2025-10-12 14:27:41,754 | INFO     | mean y: 2598375.7529411763
[2025-10-12 10:28:39] 2025-10-12 14:27:41,754 | INFO     | -- intersect: 98030704474.88022
[2025-10-12 10:28:39] 2025-10-12 14:27:41,755 | INFO     | intersect: 98030704474.88022
[2025-10-12 10:28:39] 2025-10-12 14:27:41,755 | INFO     | chi2: 0.08703520081074546
[2025-10-12 10:28:39] 2025-10-12 14:27:41,755 | INFO     | -- intersect: 98030704474.88022
[2025-10-12 10:28:39] 2025-10-12 14:27:41,755 | INFO     | current memory leak: -55.69 B/s (using 85 data points, chi2=0.09)
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | could have reported an average CPU frequency of 1939 MHz (8 samples)
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | ..............................
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | . Timing measurements:
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | . get job = 0 s
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | . initial setup = 2 s
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | . payload setup = 8 s
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | . stage-in = 0 s
[2025-10-12 10:28:39] 2025-10-12 14:27:41,756 | INFO     | . payload execution = 7361 s
[2025-10-12 10:28:39] 2025-10-12 14:27:41,757 | INFO     | . stage-out = 0 s
[2025-10-12 10:28:39] 2025-10-12 14:27:41,757 | INFO     | . log creation = 0 s
[2025-10-12 10:28:39] 2025-10-12 14:27:41,757 | INFO     | ..............................
[2025-10-12 10:28:39] 2025-10-12 14:27:42,129 | INFO     | 
[2025-10-12 10:28:39] 2025-10-12 14:27:42,129 | INFO     | job summary report
[2025-10-12 10:28:39] 2025-10-12 14:27:42,129 | INFO     | --------------------------------------------------
[2025-10-12 10:28:39] 2025-10-12 14:27:42,130 | INFO     | PanDA job id: 6839659726
[2025-10-12 10:28:39] 2025-10-12 14:27:42,130 | INFO     | task id: 46676269
[2025-10-12 10:28:39] 2025-10-12 14:27:42,130 | INFO     | errors: (none)
[2025-10-12 10:28:39] 2025-10-12 14:27:42,130 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:28:39] 2025-10-12 14:27:42,130 | INFO     | pilot state: finished 
[2025-10-12 10:28:39] 2025-10-12 14:27:42,130 | INFO     | transexitcode: 0
[2025-10-12 10:28:39] 2025-10-12 14:27:42,131 | INFO     | exeerrorcode: 0
[2025-10-12 10:28:39] 2025-10-12 14:27:42,131 | INFO     | exeerrordiag: 
[2025-10-12 10:28:39] 2025-10-12 14:27:42,131 | INFO     | exitcode: 0
[2025-10-12 10:28:39] 2025-10-12 14:27:42,131 | INFO     | exitmsg: OK
[2025-10-12 10:28:39] 2025-10-12 14:27:42,131 | INFO     | cpuconsumptiontime: 54179 s
[2025-10-12 10:28:39] 2025-10-12 14:27:42,131 | INFO     | nevents: 400
[2025-10-12 10:28:39] 2025-10-12 14:27:42,132 | INFO     | neventsw: 0
[2025-10-12 10:28:39] 2025-10-12 14:27:42,132 | INFO     | pid: 28891
[2025-10-12 10:28:39] 2025-10-12 14:27:42,132 | INFO     | pgrp: 28891
[2025-10-12 10:28:39] 2025-10-12 14:27:42,132 | INFO     | corecount: 8
[2025-10-12 10:28:39] 2025-10-12 14:27:42,132 | INFO     | event service: False
[2025-10-12 10:28:39] 2025-10-12 14:27:42,132 | INFO     | sizes: {0: 2348743, 1: 2348885, 6: 2349147, 11: 2349175, 7373: 2376537, 7375: 2385535, 7378: 2385719, 7384: 2385913}
[2025-10-12 10:28:39] 2025-10-12 14:27:42,133 | INFO     | --------------------------------------------------
[2025-10-12 10:28:39] 2025-10-12 14:27:42,133 | INFO     | 
[2025-10-12 10:28:39] 2025-10-12 14:27:42,133 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 10:28:39] 2025-10-12 14:27:42,164 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,165 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,165 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,165 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,166 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,166 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,166 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,166 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,166 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,166 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,167 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,167 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,167 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,167 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,168 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,168 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,168 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:28:39] 2025-10-12 14:27:42,168 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,168 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:28:39] 2025-10-12 14:27:42,169 | INFO     | job 6839659726 has completed (purged errors)
[2025-10-12 10:28:39] 2025-10-12 14:27:42,169 | INFO     | overall cleanup function is called
[2025-10-12 10:28:39] 2025-10-12 14:27:43,177 | INFO     | --- collectZombieJob: --- 10, [28891]
[2025-10-12 10:28:39] 2025-10-12 14:27:43,177 | INFO     | zombie collector waiting for pid 28891
[2025-10-12 10:28:39] 2025-10-12 14:27:43,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:28:39] 2025-10-12 14:27:43,178 | INFO     | collected zombie processes
[2025-10-12 10:28:39] 2025-10-12 14:27:43,178 | INFO     | will attempt to kill all subprocesses of pid=28891
[2025-10-12 10:28:39] 2025-10-12 14:27:43,269 | INFO     | process IDs to be killed: [28891] (in reverse order)
[2025-10-12 10:28:39] 2025-10-12 14:27:43,327 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:28:39] 2025-10-12 14:27:43,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:28:39] 2025-10-12 14:27:43,331 | INFO     | did not find any defunct processes belonging to 28891
[2025-10-12 10:28:39] 2025-10-12 14:27:43,335 | INFO     | did not find any defunct processes belonging to 28891
[2025-10-12 10:28:39] 2025-10-12 14:27:43,335 | INFO     | ready for new job
[2025-10-12 10:28:39] 2025-10-12 14:27:43,336 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:28:39] 2025-10-12 14:27:43,337 | INFO     | ***************************************
[2025-10-12 10:28:39] 2025-10-12 14:27:43,337 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:28:39] 2025-10-12 14:27:43,337 | INFO     | ***************************************
[2025-10-12 10:28:39] 2025-10-12 14:27:43,338 | INFO     | 
[2025-10-12 10:28:39] 2025-10-12 14:27:43,338 | INFO     | architecture information:
[2025-10-12 10:28:39] 2025-10-12 14:27:43,339 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:28:39] 2025-10-12 14:27:43,359 | INFO     | cat /etc/os-release:
[2025-10-12 10:28:39] NAME="CentOS Linux"
[2025-10-12 10:28:39] VERSION="7 (Core)"
[2025-10-12 10:28:39] ID="centos"
[2025-10-12 10:28:39] ID_LIKE="rhel fedora"
[2025-10-12 10:28:39] VERSION_ID="7"
[2025-10-12 10:28:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:28:39] ANSI_COLOR="0;31"
[2025-10-12 10:28:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:28:39] HOME_URL="https://www.centos.org/"
[2025-10-12 10:28:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:28:39] 
[2025-10-12 10:28:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:28:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:28:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:28:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:28:39] 
[2025-10-12 10:28:39] 2025-10-12 14:27:43,360 | INFO     | ***************************************
[2025-10-12 10:28:39] 2025-10-12 14:27:43,863 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 10:28:39] 2025-10-12 14:27:43,885 | INFO     | sufficient remaining disk space (18556649472 B)
[2025-10-12 10:28:39] 2025-10-12 14:27:43,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:28:39] 2025-10-12 14:27:43,886 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:28:39] 2025-10-12 14:27:43,886 | INFO     | update_server=False
[2025-10-12 10:28:39] 2025-10-12 14:27:43,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:28:39] 2025-10-12 14:27:43,886 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:28:39] 2025-10-12 14:27:43,979 | INFO     | all payload control threads have been joined
[2025-10-12 10:28:39] 2025-10-12 14:27:44,164 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 10:28:39] 2025-10-12 14:27:44,165 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 10:28:39] 2025-10-12 14:27:44,169 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:28:39] 2025-10-12 14:27:44,170 | INFO     | will abort loop
[2025-10-12 10:28:39] 2025-10-12 14:27:44,588 | INFO     | all data control threads have been joined
[2025-10-12 10:28:39] 2025-10-12 14:27:44,890 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:44,984 | INFO     | [payload] control thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,058 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,100 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,175 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,188 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,204 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,488 | INFO     | all job control threads have been joined
[2025-10-12 10:28:39] 2025-10-12 14:27:45,521 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,593 | INFO     | [data] control thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:45,889 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:46,207 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:46,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:28:39] 2025-10-12 14:27:46,381 | INFO     | [job] validate thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:46,493 | INFO     | [job] control thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:46,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:28:39] 2025-10-12 14:27:47,866 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:27:50,360 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:28:39] 2025-10-12 14:28:14,330 | INFO     | PID=22539 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 10:28:39] 2025-10-12 14:28:14,330 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:28:39] 2025-10-12 14:28:14,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:28:39] 2025-10-12 14:28:14,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:28:39] 2025-10-12 14:28:32,226 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:28:39] 2025-10-12 14:28:34,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551440406336)>', '<ExcThread(monitor, started 140550112012032)>']
[2025-10-12 10:28:39] 2025-10-12 14:28:34,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:28:39] 2025-10-12 14:28:34,434 | INFO     | [monitor] control thread has ended
[2025-10-12 10:28:39] 2025-10-12 14:28:39,037 | INFO     | all workflow threads have been joined
[2025-10-12 10:28:39] 2025-10-12 14:28:39,037 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:28:39] 2025-10-12 14:28:39,038 | INFO     | traces error code: 0
[2025-10-12 10:28:39] 2025-10-12 14:28:39,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:28:39] 2025-10-12 14:28:39,156 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:28:39] 2025-10-12 14:28:39,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:28:39] 2025-10-12 14:28:39,165 [wrapper] pilotpid: 22539
[2025-10-12 10:28:39] 2025-10-12 14:28:39,170 [wrapper] Pilot exit status: 0
[2025-10-12 10:28:39] 2025-10-12 14:28:39,189 [wrapper] pandaids: 6839659726
[2025-10-12 10:28:39] 2025-10-12 14:28:39,243 [wrapper] cleanup supervisor_pilot 25782 22540
[2025-10-12 10:28:39] 2025-10-12 14:28:39,249 [wrapper] Test setup, not cleaning
[2025-10-12 10:28:39] 2025-10-12 14:28:39,254 [wrapper] apfmon messages muted
[2025-10-12 10:28:39] 2025-10-12 14:28:39,259 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:28:39] 2025-10-12 14:28:39,263 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:28:39]  *** Error codes and diagnostics ***
[2025-10-12 10:28:39]     "exeErrorCode": 0,
[2025-10-12 10:28:39]     "exeErrorDiag": "",
[2025-10-12 10:28:39]     "pilotErrorCode": 0,
[2025-10-12 10:28:39]     "pilotErrorDiag": "",
[2025-10-12 10:28:39]  *** Listing of results directory ***
[2025-10-12 10:28:39] total 409360
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 03:41 queuedata.json
[2025-10-12 10:28:39] -rwx------ 1 boincer umatlas     36292 Oct 12 03:42 runpilot2-wrapper.sh
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas       100 Oct 12 08:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:28:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 08:24 run_atlas
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas       105 Oct 12 08:24 job.xml
[2025-10-12 10:28:39] -rw-r--r-- 2 boincer umatlas 219703965 Oct 12 08:24 EVNT.46676267._003508.pool.root.1
[2025-10-12 10:28:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:24 start_atlas.sh
[2025-10-12 10:28:39] drwxrwx--x 2 boincer umatlas      4096 Oct 12 08:24 shared
[2025-10-12 10:28:39] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 08:24 input.tar.gz
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas         0 Oct 12 08:24 boinc_lockfile
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 08:24 pandaJob.out
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas    975512 Oct 12 08:24 agis_schedconf.cvmfs.json
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas   1560580 Oct 12 08:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:28:39] drwx------ 5 boincer umatlas      4096 Oct 12 08:24 pilot3
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas 192746528 Oct 12 10:26 HITS.46676269._073705.pool.root.1
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas      1050 Oct 12 10:27 memory_monitor_summary.json
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas       530 Oct 12 10:27 boinc_task_state.xml
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas      5909 Oct 12 10:27 init_data.xml
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas    368877 Oct 12 10:27 log.46676269._073705.job.log.tgz.1
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas      7852 Oct 12 10:27 heartbeat.json
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas        95 Oct 12 10:28 pilot_heartbeat.json
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 10:28 boinc_mmap_file
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas        27 Oct 12 10:28 wrapper_checkpoint.txt
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas      4932 Oct 12 10:28 pilotlog.txt
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas   1047349 Oct 12 10:28 log.46676269._073705.job.log.1
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas       357 Oct 12 10:28 output.list
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas       620 Oct 12 10:28 runtime_log
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas   1433600 Oct 12 10:28 result.tar.gz
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 10:28 runtime_log.err
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas       659 Oct 12 10:28 AC6KDmlt5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL2iNDm1bcW9m.diag
[2025-10-12 10:28:39] -rw-r--r-- 1 boincer umatlas     20888 Oct 12 10:28 stderr.txt
[2025-10-12 10:28:39] HITS file was successfully produced:
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas 192746528 Oct 12 10:26 shared/HITS.pool.root.1
[2025-10-12 10:28:39]  *** Contents of shared directory: ***
[2025-10-12 10:28:39] total 404768
[2025-10-12 10:28:39] -rw-r--r-- 2 boincer umatlas 219703965 Oct 12 08:24 ATLAS.root_0
[2025-10-12 10:28:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:24 start_atlas.sh
[2025-10-12 10:28:39] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 08:24 input.tar.gz
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas 192746528 Oct 12 10:26 HITS.pool.root.1
[2025-10-12 10:28:39] -rw------- 1 boincer umatlas   1433600 Oct 12 10:28 result.tar.gz
10:28:40 (18636): run_atlas exited; CPU time 54195.777320
10:28:40 (18636): called boinc_finish(0)

</stderr_txt>
]]>

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