Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:22:32 (1630833): wrapper (7.7.26015): starting
08:22:32 (1630833): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 08:22:32] Arguments: --nthreads 8
[2025-10-12 08:22:32] Threads: 8
[2025-10-12 08:22:32] Checking for CVMFS
[2025-10-12 08:22:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:22:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:22:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:22:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:22:32] 2.13.2.0 5158 5674 103756 151620 0 152 40025566 40960001 22975 16776704 0 17805572 99.879 3467496 30848 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:22:32] CVMFS is ok
[2025-10-12 08:22:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:22:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:22:32] Further information can be found at the LHC@home message board.
[2025-10-12 08:22:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:22:32] Checking for apptainer binary...
[2025-10-12 08:22:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:22:32] Running /usr/bin/apptainer --version
[2025-10-12 08:22:32] apptainer version 1.4.3-1.el9
[2025-10-12 08:22:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:22:32] c-212-13.aglt2.org
[2025-10-12 08:22:32] apptainer works
[2025-10-12 08:22:32] Set ATHENA_PROC_NUMBER=8
[2025-10-12 08:22:32] Set ATHENA_CORE_NUMBER=8
[2025-10-12 08:22:32] Starting ATLAS job with PandaID=6839660005
[2025-10-12 08:22:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:55:04]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:55:04] 2025-10-12 13:53:50,034 | INFO     | transferring file log.46676269._073777.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839660005/log.46676269._073777.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 09:55:04] 2025-10-12 13:53:50,034 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839660005/log.46676269._073777.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._073777.job
[2025-10-12 09:55:04] 2025-10-12 13:53:50,056 | INFO     | adding to output.list: log.46676269._073777.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/87/log.46676269._073777.job.log.tg
[2025-10-12 09:55:04] 2025-10-12 13:53:50,057 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 09:55:04] 2025-10-12 13:53:50,057 | INFO     | summary of transferred files:
[2025-10-12 09:55:04] 2025-10-12 13:53:50,057 | INFO     |  -- lfn=log.46676269._073777.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 09:55:04] 2025-10-12 13:53:50,057 | INFO     | stage-out finished correctly
[2025-10-12 09:55:04] 2025-10-12 13:53:50,678 | INFO     | time since job start (5461s) is within the limit (172800.0s)
[2025-10-12 09:55:04] 2025-10-12 13:53:51,262 | INFO     | monitor loop #385: job 0:6839660005 is in state 'finished'
[2025-10-12 09:55:04] 2025-10-12 13:53:51,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:55:04] 2025-10-12 13:53:51,665 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:55:04] 2025-10-12 13:53:52,697 | INFO     | time since job start (5463s) is within the limit (172800.0s)
[2025-10-12 09:55:04] 2025-10-12 13:53:53,766 | INFO     | monitor loop #386: job 0:6839660005 is in state 'finished'
[2025-10-12 09:55:04] 2025-10-12 13:53:53,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:55:04] 2025-10-12 13:53:54,577 | INFO     | job 6839660005 has state=finished
[2025-10-12 09:55:04] 2025-10-12 13:53:54,577 | INFO     | preparing for final server update for job 6839660005 in state='finished'
[2025-10-12 09:55:04] 2025-10-12 13:53:54,577 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:55:04] 2025-10-12 13:53:54,578 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:55:04] 2025-10-12 13:53:54,578 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:55:04] 2025-10-12 13:53:54,578 | INFO     | job 6839660005 has finished - writing final server update
[2025-10-12 09:55:04] 2025-10-12 13:53:54,578 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:55:04] 2025-10-12 13:53:54,578 | INFO     | executing command: lscpu
[2025-10-12 09:55:04] 2025-10-12 13:53:54,647 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:55:04] 2025-10-12 13:53:54,705 | INFO     | time since job start (5465s) is within the limit (172800.0s)
[2025-10-12 09:55:04] 2025-10-12 13:53:56,271 | INFO     | monitor loop #387: job 0:6839660005 is in state 'finished'
[2025-10-12 09:55:04] 2025-10-12 13:53:56,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:55:04] 2025-10-12 13:53:56,716 | INFO     | time since job start (5467s) is within the limit (172800.0s)
[2025-10-12 09:55:04] 2025-10-12 13:53:58,722 | INFO     | time since job start (5469s) is within the limit (172800.0s)
[2025-10-12 09:55:04] 2025-10-12 13:53:58,779 | INFO     | monitor loop #388: job 0:6839660005 is in state 'finished'
[2025-10-12 09:55:04] 2025-10-12 13:53:58,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:55:04] 2025-10-12 13:54:00,729 | INFO     | time since job start (5471s) is within the limit (172800.0s)
[2025-10-12 09:55:04] 2025-10-12 13:54:01,285 | INFO     | monitor loop #389: job 0:6839660005 is in state 'finished'
[2025-10-12 09:55:04] 2025-10-12 13:54:01,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:55:04] 2025-10-12 13:54:02,834 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 09:55:04] 2025-10-12 13:54:02,840 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2875.1314791666664
[2025-10-12 09:55:04] 2025-10-12 13:54:02,861 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839660005/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:55:04] 2025-10-12 13:54:02,862 | INFO     | extracted standard info from prmon json
[2025-10-12 09:55:04] 2025-10-12 13:54:02,862 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:55:04] 2025-10-12 13:54:02,864 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:55:04] 2025-10-12 13:54:02,865 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:55:04] 2025-10-12 13:54:02,865 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:55:04] 2025-10-12 13:54:02,866 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | sum of square deviations: 170940880.4878044
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | sum of deviations: -14098994716.658535
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | mean x: 1760274579.512195
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | mean y: 2646877.6585365855
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | -- intersect: 145187940913.753
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | intersect: 145187940913.753
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | chi2: 0.029111021458858948
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | -- intersect: 145187940913.753
[2025-10-12 09:55:04] 2025-10-12 13:54:02,867 | INFO     | current memory leak: -82.48 B/s (using 82 data points, chi2=0.03)
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | could have reported an average CPU frequency of 2891 MHz (7 samples)
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | ..............................
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . Timing measurements:
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . get job = 0 s
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . initial setup = 2 s
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . payload setup = 9 s
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . stage-in = 0 s
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . payload execution = 5428 s
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . stage-out = 0 s
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | . log creation = 0 s
[2025-10-12 09:55:04] 2025-10-12 13:54:02,868 | INFO     | ..............................
[2025-10-12 09:55:04] 2025-10-12 13:54:03,007 | INFO     | 
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | job summary report
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | --------------------------------------------------
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | PanDA job id: 6839660005
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | task id: 46676269
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | errors: (none)
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | pilot state: finished 
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | transexitcode: 0
[2025-10-12 09:55:04] 2025-10-12 13:54:03,008 | INFO     | exeerrorcode: 0
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | exeerrordiag: 
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | exitcode: 0
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | exitmsg: OK
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | cpuconsumptiontime: 36409 s
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | nevents: 400
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | neventsw: 0
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | pid: 1642200
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | pgrp: 1642200
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | corecount: 8
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | event service: False
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | sizes: {0: 2348857, 7: 2349119, 11: 2349147, 5441: 2375829, 5442: 2384827, 5444: 2384883, 5455: 2385035}
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | --------------------------------------------------
[2025-10-12 09:55:04] 2025-10-12 13:54:03,009 | INFO     | 
[2025-10-12 09:55:04] 2025-10-12 13:54:03,010 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,090 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:55:04] 2025-10-12 13:54:03,091 | INFO     | job 6839660005 has completed (purged errors)
[2025-10-12 09:55:04] 2025-10-12 13:54:03,092 | INFO     | overall cleanup function is called
[2025-10-12 09:55:04] 2025-10-12 13:54:03,136 | INFO     | PID=1634522 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 09:55:04] 2025-10-12 13:54:03,136 | INFO     | .. there are 17 such processes running
[2025-10-12 09:55:04] 2025-10-12 13:54:04,100 | INFO     | --- collectZombieJob: --- 10, [1642200]
[2025-10-12 09:55:04] 2025-10-12 13:54:04,101 | INFO     | zombie collector waiting for pid 1642200
[2025-10-12 09:55:04] 2025-10-12 13:54:04,101 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:55:04] 2025-10-12 13:54:04,101 | INFO     | collected zombie processes
[2025-10-12 09:55:04] 2025-10-12 13:54:04,101 | INFO     | will attempt to kill all subprocesses of pid=1642200
[2025-10-12 09:55:04] 2025-10-12 13:54:04,518 | INFO     | process IDs to be killed: [1642200] (in reverse order)
[2025-10-12 09:55:04] 2025-10-12 13:54:04,651 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:55:04] 2025-10-12 13:54:04,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:55:04] 2025-10-12 13:54:04,668 | INFO     | did not find any defunct processes belonging to 1642200
[2025-10-12 09:55:04] 2025-10-12 13:54:04,685 | INFO     | did not find any defunct processes belonging to 1642200
[2025-10-12 09:55:04] 2025-10-12 13:54:04,685 | INFO     | ready for new job
[2025-10-12 09:55:04] 2025-10-12 13:54:04,685 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:55:04] 2025-10-12 13:54:04,687 | INFO     | ***************************************
[2025-10-12 09:55:04] 2025-10-12 13:54:04,687 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:55:04] 2025-10-12 13:54:04,687 | INFO     | ***************************************
[2025-10-12 09:55:04] 2025-10-12 13:54:04,687 | INFO     | 
[2025-10-12 09:55:04] 2025-10-12 13:54:04,693 | INFO     | architecture information:
[2025-10-12 09:55:04] 2025-10-12 13:54:04,693 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:55:04] 2025-10-12 13:54:04,713 | INFO     | cat /etc/os-release:
[2025-10-12 09:55:04] NAME="CentOS Linux"
[2025-10-12 09:55:04] VERSION="7 (Core)"
[2025-10-12 09:55:04] ID="centos"
[2025-10-12 09:55:04] ID_LIKE="rhel fedora"
[2025-10-12 09:55:04] VERSION_ID="7"
[2025-10-12 09:55:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:55:04] ANSI_COLOR="0;31"
[2025-10-12 09:55:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:55:04] HOME_URL="https://www.centos.org/"
[2025-10-12 09:55:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:55:04] 
[2025-10-12 09:55:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:55:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:55:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:55:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:55:04] 
[2025-10-12 09:55:04] 2025-10-12 13:54:04,713 | INFO     | ***************************************
[2025-10-12 09:55:04] 2025-10-12 13:54:05,216 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 09:55:04] 2025-10-12 13:54:05,239 | INFO     | sufficient remaining disk space (127482724352 B)
[2025-10-12 09:55:04] 2025-10-12 13:54:05,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:55:04] 2025-10-12 13:54:05,240 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:55:04] 2025-10-12 13:54:05,240 | INFO     | update_server=False
[2025-10-12 09:55:04] 2025-10-12 13:54:05,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:55:04] 2025-10-12 13:54:05,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:55:04] 2025-10-12 13:54:05,240 | INFO     | aborting loop
[2025-10-12 09:55:04] 2025-10-12 13:54:05,462 | INFO     | all payload control threads have been joined
[2025-10-12 09:55:04] 2025-10-12 13:54:05,674 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:55:04] 2025-10-12 13:54:06,166 | INFO     | all data control threads have been joined
[2025-10-12 09:55:04] 2025-10-12 13:54:06,246 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:06,255 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:06,467 | INFO     | [payload] control thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:06,499 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:06,586 | INFO     | all job control threads have been joined
[2025-10-12 09:55:04] 2025-10-12 13:54:06,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:55:04] 2025-10-12 13:54:07,035 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,172 | INFO     | [data] control thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,278 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,340 | INFO     | [job] validate thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,340 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,486 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,591 | INFO     | [job] control thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,680 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:07,846 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:08,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:55:04] 2025-10-12 13:54:09,010 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:10,780 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:15,675 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:55:04] 2025-10-12 13:54:16,681 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:55:04] 2025-10-12 13:54:35,681 | INFO     | PID=1634522 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:55:04] 2025-10-12 13:54:35,681 | INFO     | .. there are 17 such processes running
[2025-10-12 09:55:04] 2025-10-12 13:54:35,682 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:55:04] 2025-10-12 13:54:35,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:55:04] 2025-10-12 13:54:35,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:55:04] 2025-10-12 13:54:58,485 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:55:04] 2025-10-12 13:54:58,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199148488512)>', '<ExcThread(monitor, started 140198511888128)>']
[2025-10-12 09:55:04] 2025-10-12 13:54:58,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:55:04] 2025-10-12 13:54:58,825 | INFO     | [monitor] control thread has ended
[2025-10-12 09:55:04] 2025-10-12 13:55:03,768 | INFO     | all workflow threads have been joined
[2025-10-12 09:55:04] 2025-10-12 13:55:03,769 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:55:04] 2025-10-12 13:55:03,769 | INFO     | traces error code: 0
[2025-10-12 09:55:04] 2025-10-12 13:55:03,769 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:55:04] 2025-10-12 13:55:03,939 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:55:04] 2025-10-12 13:55:03,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:55:04] 2025-10-12 13:55:03,945 [wrapper] pilotpid: 1634522
[2025-10-12 09:55:04] 2025-10-12 13:55:03,947 [wrapper] Pilot exit status: 0
[2025-10-12 09:55:04] 2025-10-12 13:55:03,969 [wrapper] pandaids: 6839660005
[2025-10-12 09:55:04] 2025-10-12 13:55:04,062 [wrapper] cleanup supervisor_pilot 1912524 1634523
[2025-10-12 09:55:04] 2025-10-12 13:55:04,065 [wrapper] Test setup, not cleaning
[2025-10-12 09:55:04] 2025-10-12 13:55:04,085 [wrapper] apfmon messages muted
[2025-10-12 09:55:04] 2025-10-12 13:55:04,088 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:55:04] 2025-10-12 13:55:04,091 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:55:04]  *** Error codes and diagnostics ***
[2025-10-12 09:55:04]     "exeErrorCode": 0,
[2025-10-12 09:55:04]     "exeErrorDiag": "",
[2025-10-12 09:55:04]     "pilotErrorCode": 0,
[2025-10-12 09:55:04]     "pilotErrorDiag": "",
[2025-10-12 09:55:04]  *** Listing of results directory ***
[2025-10-12 09:55:04] total 412476
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 09:55:04] -rwx------. 1 boincer umatlas     36292 Oct 12 03:43 runpilot2-wrapper.sh
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 03:43 queuedata.json
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas       100 Oct 12 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:55:04] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 08:22 run_atlas
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas       105 Oct 12 08:22 job.xml
[2025-10-12 09:55:04] -rw-r--r--. 2 boincer umatlas 223396460 Oct 12 08:22 EVNT.46676267._003512.pool.root.1
[2025-10-12 09:55:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:22 start_atlas.sh
[2025-10-12 09:55:04] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 08:22 shared
[2025-10-12 09:55:04] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 08:22 input.tar.gz
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas         0 Oct 12 08:22 boinc_lockfile
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 08:22 pandaJob.out
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas    975512 Oct 12 08:22 agis_schedconf.cvmfs.json
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas   1560580 Oct 12 08:22 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:55:04] drwx------. 5 boincer umatlas      4096 Oct 12 08:22 pilot3
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas      6946 Oct 12 09:46 init_data.xml
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas 192816718 Oct 12 09:53 HITS.46676269._073777.pool.root.1
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas       529 Oct 12 09:53 boinc_task_state.xml
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas      1037 Oct 12 09:53 memory_monitor_summary.json
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas    342650 Oct 12 09:53 log.46676269._073777.job.log.tgz.1
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas      7780 Oct 12 09:54 heartbeat.json
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas        95 Oct 12 09:54 pilot_heartbeat.json
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas      4897 Oct 12 09:55 pilotlog.txt
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 09:55 boinc_mmap_file
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas        27 Oct 12 09:55 wrapper_checkpoint.txt
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas    783147 Oct 12 09:55 log.46676269._073777.job.log.1
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas       357 Oct 12 09:55 output.list
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas       620 Oct 12 09:55 runtime_log
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas   1146880 Oct 12 09:55 result.tar.gz
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas       653 Oct 12 09:55 XFKNDmNv5R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmSTTMDmRUheVm.diag
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 09:55 runtime_log.err
[2025-10-12 09:55:04] -rw-r--r--. 1 boincer umatlas     22536 Oct 12 09:55 stderr.txt
[2025-10-12 09:55:04] HITS file was successfully produced:
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas 192816718 Oct 12 09:53 shared/HITS.pool.root.1
[2025-10-12 09:55:04]  *** Contents of shared directory: ***
[2025-10-12 09:55:04] total 408168
[2025-10-12 09:55:04] -rw-r--r--. 2 boincer umatlas 223396460 Oct 12 08:22 ATLAS.root_0
[2025-10-12 09:55:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:22 start_atlas.sh
[2025-10-12 09:55:04] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 08:22 input.tar.gz
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas 192816718 Oct 12 09:53 HITS.pool.root.1
[2025-10-12 09:55:04] -rw-------. 1 boincer umatlas   1146880 Oct 12 09:55 result.tar.gz
09:55:06 (1630833): run_atlas exited; CPU time 36479.579016
09:55:06 (1630833): called boinc_finish(0)

</stderr_txt>
]]>

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