Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:21:57 (3572585): wrapper (7.7.26015): starting
08:21:57 (3572585): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:21:57] Arguments: --nthreads 12
[2025-10-12 08:21:57] Threads: 12
[2025-10-12 08:21:57] Checking for CVMFS
[2025-10-12 08:21:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:21:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:21:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:21:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:21:58] 2.13.2.0 3683012 12781 150728 151620 2 195 37273999 40960001 6591 16776704 0 144954495 99.859 55073210 32592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 08:21:58] CVMFS is ok
[2025-10-12 08:21:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:21:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:21:58] Further information can be found at the LHC@home message board.
[2025-10-12 08:21:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:21:58] Checking for apptainer binary...
[2025-10-12 08:21:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:21:58] Running /usr/bin/apptainer --version
[2025-10-12 08:21:58] apptainer version 1.4.3-1.el9
[2025-10-12 08:21:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:21:58] c8-7-4.aglt2.org
[2025-10-12 08:21:58] apptainer works
[2025-10-12 08:21:58] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:21:58] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:21:58] Starting ATLAS job with PandaID=6839659775
[2025-10-12 08:21:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:53:15]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:53:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 08:53:15]  replicas=None
[2025-10-12 08:53:15]  scope=mc23_13p6TeV
[2025-10-12 08:53:15]  status=None
[2025-10-12 08:53:15]  status_code=0
[2025-10-12 08:53:15]  storage_token=
[2025-10-12 08:53:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839659775/log.46676269._073754.job.log.tgz.1
[2025-10-12 08:53:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/f8/log.46676269._073754.job.log.tgz.1
[2025-10-12 08:53:15]  workdir=None
[2025-10-12 08:53:15] ]
[2025-10-12 08:53:15] 2025-10-12 12:52:34,343 | INFO     | transferring file log.46676269._073754.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839659775/log.46676269._073754.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 08:53:15] 2025-10-12 12:52:34,343 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839659775/log.46676269._073754.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._073754.job
[2025-10-12 08:53:15] 2025-10-12 12:52:34,357 | INFO     | adding to output.list: log.46676269._073754.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/f8/log.46676269._073754.job.log.tg
[2025-10-12 08:53:15] 2025-10-12 12:52:34,358 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 08:53:15] 2025-10-12 12:52:34,358 | INFO     | summary of transferred files:
[2025-10-12 08:53:15] 2025-10-12 12:52:34,358 | INFO     |  -- lfn=log.46676269._073754.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 08:53:15] 2025-10-12 12:52:34,358 | INFO     | stage-out finished correctly
[2025-10-12 08:53:15] 2025-10-12 12:52:34,409 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 08:53:15] 2025-10-12 12:52:34,581 | WARNING  | process 3582907 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 08:53:15] 2025-10-12 12:52:34,582 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839659775/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:53:15] 2025-10-12 12:52:34,814 | INFO     | number of running child processes to parent process 3582907: 1
[2025-10-12 08:53:15] 2025-10-12 12:52:34,814 | INFO     | maximum number of monitored processes: 6
[2025-10-12 08:53:15] 2025-10-12 12:52:35,700 | INFO     | time since job start (1828s) is within the limit (172800.0s)
[2025-10-12 08:53:15] 2025-10-12 12:52:36,524 | INFO     | job 6839659775 has state=finished
[2025-10-12 08:53:15] 2025-10-12 12:52:36,525 | INFO     | preparing for final server update for job 6839659775 in state='finished'
[2025-10-12 08:53:15] 2025-10-12 12:52:36,525 | INFO     | this job has now completed (state=finished)
[2025-10-12 08:53:15] 2025-10-12 12:52:36,525 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 08:53:15] 2025-10-12 12:52:36,525 | INFO     | log transfer has been attempted: DONE
[2025-10-12 08:53:15] 2025-10-12 12:52:36,525 | INFO     | job 6839659775 has finished - writing final server update
[2025-10-12 08:53:15] 2025-10-12 12:52:36,526 | INFO     | total number of processed events: 400 (read)
[2025-10-12 08:53:15] 2025-10-12 12:52:36,526 | INFO     | executing command: lscpu
[2025-10-12 08:53:15] 2025-10-12 12:52:36,580 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 08:53:15] 2025-10-12 12:52:37,317 | INFO     | monitor loop #138: job 0:6839659775 is in state 'finished'
[2025-10-12 08:53:15] 2025-10-12 12:52:37,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:53:15] 2025-10-12 12:52:37,706 | INFO     | time since job start (1830s) is within the limit (172800.0s)
[2025-10-12 08:53:15] 2025-10-12 12:52:38,914 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 08:53:15] 2025-10-12 12:52:38,917 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3525.1719531249905
[2025-10-12 08:53:15] 2025-10-12 12:52:38,925 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839659775/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:53:15] 2025-10-12 12:52:38,925 | INFO     | extracted standard info from prmon json
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | fitting pss+swap vs Time
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | sum of square deviations: 3765652.0
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | sum of deviations: -19834333.000000007
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | mean x: 1760272727.0
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | mean y: 2427617.652173913
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | -- intersect: 9274085072.492958
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | intersect: 9274085072.492958
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | chi2: 0.0008408216266591766
[2025-10-12 08:53:15] 2025-10-12 12:52:38,926 | INFO     | -- intersect: 9274085072.492958
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | current memory leak: -5.27 B/s (using 23 data points, chi2=0.00)
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | could have reported an average CPU frequency of 3553 MHz (5 samples)
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | ..............................
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . Timing measurements:
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . get job = 0 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . initial setup = 2 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . payload setup = 4 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . stage-in = 0 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . payload execution = 1803 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . stage-out = 0 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | . log creation = 0 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,927 | INFO     | ..............................
[2025-10-12 08:53:15] 2025-10-12 12:52:38,958 | INFO     | 
[2025-10-12 08:53:15] 2025-10-12 12:52:38,958 | INFO     | job summary report
[2025-10-12 08:53:15] 2025-10-12 12:52:38,958 | INFO     | --------------------------------------------------
[2025-10-12 08:53:15] 2025-10-12 12:52:38,958 | INFO     | PanDA job id: 6839659775
[2025-10-12 08:53:15] 2025-10-12 12:52:38,958 | INFO     | task id: 46676269
[2025-10-12 08:53:15] 2025-10-12 12:52:38,958 | INFO     | errors: (none)
[2025-10-12 08:53:15] 2025-10-12 12:52:38,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | pilot state: finished 
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | transexitcode: 0
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | exeerrorcode: 0
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | exeerrordiag: 
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | exitcode: 0
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | exitmsg: OK
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | cpuconsumptiontime: 18882 s
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | nevents: 400
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | neventsw: 0
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | pid: 3582907
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | pgrp: 3582907
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | corecount: 12
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | event service: False
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 1811: 2374124, 1812: 2383177, 1813: 2383177, 1817: 2383531}
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | --------------------------------------------------
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | 
[2025-10-12 08:53:15] 2025-10-12 12:52:38,959 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 08:53:15] 2025-10-12 12:52:38,976 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,976 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,976 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | job 6839659775 has completed (purged errors)
[2025-10-12 08:53:15] 2025-10-12 12:52:38,977 | INFO     | overall cleanup function is called
[2025-10-12 08:53:15] 2025-10-12 12:52:39,984 | INFO     | --- collectZombieJob: --- 10, [3582907]
[2025-10-12 08:53:15] 2025-10-12 12:52:39,984 | INFO     | zombie collector waiting for pid 3582907
[2025-10-12 08:53:15] 2025-10-12 12:52:39,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:53:15] 2025-10-12 12:52:39,984 | INFO     | collected zombie processes
[2025-10-12 08:53:15] 2025-10-12 12:52:39,984 | INFO     | will attempt to kill all subprocesses of pid=3582907
[2025-10-12 08:53:15] 2025-10-12 12:52:40,196 | INFO     | process IDs to be killed: [3582907] (in reverse order)
[2025-10-12 08:53:15] 2025-10-12 12:52:40,281 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:53:15] 2025-10-12 12:52:40,281 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:53:15] 2025-10-12 12:52:40,296 | INFO     | did not find any defunct processes belonging to 3582907
[2025-10-12 08:53:15] 2025-10-12 12:52:40,307 | INFO     | did not find any defunct processes belonging to 3582907
[2025-10-12 08:53:15] 2025-10-12 12:52:40,307 | INFO     | ready for new job
[2025-10-12 08:53:15] 2025-10-12 12:52:40,307 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:53:15] 2025-10-12 12:52:40,308 | INFO     | ***************************************
[2025-10-12 08:53:15] 2025-10-12 12:52:40,308 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:53:15] 2025-10-12 12:52:40,308 | INFO     | ***************************************
[2025-10-12 08:53:15] 2025-10-12 12:52:40,308 | INFO     | 
[2025-10-12 08:53:15] 2025-10-12 12:52:40,325 | INFO     | architecture information:
[2025-10-12 08:53:15] 2025-10-12 12:52:40,325 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:53:15] 2025-10-12 12:52:40,335 | INFO     | cat /etc/os-release:
[2025-10-12 08:53:15] NAME="CentOS Linux"
[2025-10-12 08:53:15] VERSION="7 (Core)"
[2025-10-12 08:53:15] ID="centos"
[2025-10-12 08:53:15] ID_LIKE="rhel fedora"
[2025-10-12 08:53:15] VERSION_ID="7"
[2025-10-12 08:53:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:53:15] ANSI_COLOR="0;31"
[2025-10-12 08:53:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:53:15] HOME_URL="https://www.centos.org/"
[2025-10-12 08:53:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:53:15] 
[2025-10-12 08:53:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:53:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:53:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:53:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:53:15] 
[2025-10-12 08:53:15] 2025-10-12 12:52:40,335 | INFO     | ***************************************
[2025-10-12 08:53:15] 2025-10-12 12:52:40,838 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 08:53:15] 2025-10-12 12:52:40,849 | INFO     | sufficient remaining disk space (167785791488 B)
[2025-10-12 08:53:15] 2025-10-12 12:52:40,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:53:15] 2025-10-12 12:52:40,850 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:53:15] 2025-10-12 12:52:40,850 | INFO     | update_server=False
[2025-10-12 08:53:15] 2025-10-12 12:52:40,850 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:53:15] 2025-10-12 12:52:40,850 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:53:15] 2025-10-12 12:52:40,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:53:15] 2025-10-12 12:52:40,850 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:53:15] 2025-10-12 12:52:40,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:53:15] 2025-10-12 12:52:40,851 | INFO     | aborting loop
[2025-10-12 08:53:15] 2025-10-12 12:52:41,216 | INFO     | all payload control threads have been joined
[2025-10-12 08:53:15] 2025-10-12 12:52:41,720 | INFO     | all data control threads have been joined
[2025-10-12 08:53:15] 2025-10-12 12:52:41,854 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:41,855 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:41,856 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:41,924 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,059 | INFO     | [job] validate thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,139 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,217 | INFO     | [payload] control thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,235 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,277 | INFO     | all job control threads have been joined
[2025-10-12 08:53:15] 2025-10-12 12:52:42,319 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,716 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,726 | INFO     | [data] control thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,855 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:42,958 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:43,282 | INFO     | [job] control thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:44,856 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:52:51,665 | INFO     | job.realtimelogging is not enabled
[2025-10-12 08:53:15] 2025-10-12 12:52:52,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:53:15] 2025-10-12 12:53:09,364 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:53:15] 2025-10-12 12:53:10,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122728228672)>', '<ExcThread(monitor, started 140121965852416)>']
[2025-10-12 08:53:15] 2025-10-12 12:53:11,202 | INFO     | PID=3576333 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 08:53:15] 2025-10-12 12:53:11,202 | INFO     | .. there are 10 such processes running
[2025-10-12 08:53:15] 2025-10-12 12:53:11,203 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:53:15] 2025-10-12 12:53:11,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:53:15] 2025-10-12 12:53:11,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:53:15] 2025-10-12 12:53:11,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:53:15] 2025-10-12 12:53:11,203 | INFO     | [monitor] control thread has ended
[2025-10-12 08:53:15] 2025-10-12 12:53:15,209 | INFO     | all workflow threads have been joined
[2025-10-12 08:53:15] 2025-10-12 12:53:15,209 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:53:15] 2025-10-12 12:53:15,210 | INFO     | traces error code: 0
[2025-10-12 08:53:15] 2025-10-12 12:53:15,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:53:15] 2025-10-12 12:53:15,326 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:53:15] 2025-10-12 12:53:15,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:53:15] 2025-10-12 12:53:15,330 [wrapper] pilotpid: 3576333
[2025-10-12 08:53:15] 2025-10-12 12:53:15,332 [wrapper] Pilot exit status: 0
[2025-10-12 08:53:15] 2025-10-12 12:53:15,339 [wrapper] pandaids: 6839659775
[2025-10-12 08:53:15] 2025-10-12 12:53:15,402 [wrapper] cleanup supervisor_pilot 3754170 3576334
[2025-10-12 08:53:15] 2025-10-12 12:53:15,404 [wrapper] Test setup, not cleaning
[2025-10-12 08:53:15] 2025-10-12 12:53:15,406 [wrapper] apfmon messages muted
[2025-10-12 08:53:15] 2025-10-12 12:53:15,408 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:53:15] 2025-10-12 12:53:15,410 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:53:15]  *** Error codes and diagnostics ***
[2025-10-12 08:53:15]     "exeErrorCode": 0,
[2025-10-12 08:53:15]     "exeErrorDiag": "",
[2025-10-12 08:53:15]     "pilotErrorCode": 0,
[2025-10-12 08:53:15]     "pilotErrorDiag": "",
[2025-10-12 08:53:15]  *** Listing of results directory ***
[2025-10-12 08:53:15] total 415852
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 03:43 queuedata.json
[2025-10-12 08:53:15] -rwx------. 1 boincer umatlas     36292 Oct 12 03:45 runpilot2-wrapper.sh
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas       100 Oct 12 08:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:53:15] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 08:21 run_atlas
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas       105 Oct 12 08:21 job.xml
[2025-10-12 08:53:15] -rw-r--r--. 2 boincer umatlas 222131751 Oct 12 08:21 EVNT.46676267._003511.pool.root.1
[2025-10-12 08:53:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:21 start_atlas.sh
[2025-10-12 08:53:15] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 08:21 shared
[2025-10-12 08:53:15] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 08:21 input.tar.gz
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas         0 Oct 12 08:21 boinc_lockfile
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 08:21 pandaJob.out
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas    975512 Oct 12 08:22 agis_schedconf.cvmfs.json
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas   1560580 Oct 12 08:22 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:53:15] drwx------. 5 boincer umatlas      4096 Oct 12 08:22 pilot3
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 08:46 init_data.xml
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas 198498722 Oct 12 08:52 HITS.46676269._073754.pool.root.1
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas       529 Oct 12 08:52 boinc_task_state.xml
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas      1029 Oct 12 08:52 memory_monitor_summary.json
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas    347917 Oct 12 08:52 log.46676269._073754.job.log.tgz.1
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas      7771 Oct 12 08:52 heartbeat.json
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas        95 Oct 12 08:53 pilot_heartbeat.json
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas      4897 Oct 12 08:53 pilotlog.txt
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas        27 Oct 12 08:53 wrapper_checkpoint.txt
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 08:53 boinc_mmap_file
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas    302600 Oct 12 08:53 log.46676269._073754.job.log.1
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas       357 Oct 12 08:53 output.list
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas       620 Oct 12 08:53 runtime_log
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas    665600 Oct 12 08:53 result.tar.gz
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas       646 Oct 12 08:53 vaqLDmrw5R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmTTMDmxKvmgn.diag
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 08:53 runtime_log.err
[2025-10-12 08:53:15] -rw-r--r--. 1 boincer umatlas     21871 Oct 12 08:53 stderr.txt
[2025-10-12 08:53:15] HITS file was successfully produced:
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas 198498722 Oct 12 08:52 shared/HITS.pool.root.1
[2025-10-12 08:53:15]  *** Contents of shared directory: ***
[2025-10-12 08:53:15] total 412012
[2025-10-12 08:53:15] -rw-r--r--. 2 boincer umatlas 222131751 Oct 12 08:21 ATLAS.root_0
[2025-10-12 08:53:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:21 start_atlas.sh
[2025-10-12 08:53:15] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 08:21 input.tar.gz
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas 198498722 Oct 12 08:52 HITS.pool.root.1
[2025-10-12 08:53:15] -rw-------. 1 boincer umatlas    665600 Oct 12 08:53 result.tar.gz
08:53:17 (3572585): run_atlas exited; CPU time 18915.221524
08:53:17 (3572585): called boinc_finish(0)

</stderr_txt>
]]>

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