Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:22:37 (18985): wrapper (7.7.26015): starting
08:22:37 (18985): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:22:37] Arguments: --nthreads 12
[2025-10-12 08:22:37] Threads: 12
[2025-10-12 08:22:37] Checking for CVMFS
[2025-10-12 08:22:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:22:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:22:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:22:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:22:38] 2.11.2.0 2998 222830 103592 151620 1 56 15069588 20275201 1 130560 1 108840947 99.984 13373072 12696 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:22:38] CVMFS is ok
[2025-10-12 08:22:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:22:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:22:38] Further information can be found at the LHC@home message board.
[2025-10-12 08:22:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:22:38] Checking for apptainer binary...
[2025-10-12 08:22:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:22:38] Running /usr/bin/apptainer --version
[2025-10-12 08:22:38] apptainer version 1.3.2-1.el7
[2025-10-12 08:22:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:22:39] c-205-25.aglt2.org
[2025-10-12 08:22:39] apptainer works
[2025-10-12 08:22:39] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:22:39] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:22:39] Starting ATLAS job with PandaID=6839659063
[2025-10-12 08:22:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:36:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:36:22]  replicas=None
[2025-10-12 09:36:22]  scope=mc23_13p6TeV
[2025-10-12 09:36:22]  status=None
[2025-10-12 09:36:22]  status_code=0
[2025-10-12 09:36:22]  storage_token=
[2025-10-12 09:36:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839659063/log.46676269._073544.job.log.tgz.1
[2025-10-12 09:36:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/d3/log.46676269._073544.job.log.tgz.1
[2025-10-12 09:36:22]  workdir=None
[2025-10-12 09:36:22] ]
[2025-10-12 09:36:22] 2025-10-12 13:35:43,132 | INFO     | time since job start (4369s) is within the limit (172800.0s)
[2025-10-12 09:36:22] 2025-10-12 13:35:43,155 | INFO     | transferring file log.46676269._073544.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839659063/log.46676269._073544.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 09:36:22] 2025-10-12 13:35:43,155 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839659063/log.46676269._073544.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._073544.job
[2025-10-12 09:36:22] 2025-10-12 13:35:43,180 | INFO     | adding to output.list: log.46676269._073544.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/d3/log.46676269._073544.job.log.tg
[2025-10-12 09:36:22] 2025-10-12 13:35:43,181 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 09:36:22] 2025-10-12 13:35:43,181 | INFO     | summary of transferred files:
[2025-10-12 09:36:22] 2025-10-12 13:35:43,181 | INFO     |  -- lfn=log.46676269._073544.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 09:36:22] 2025-10-12 13:35:43,181 | INFO     | stage-out finished correctly
[2025-10-12 09:36:22] 2025-10-12 13:35:43,265 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:36:22] 2025-10-12 13:35:43,593 | INFO     | monitor loop #326: job 0:6839659063 is in state 'finished'
[2025-10-12 09:36:22] 2025-10-12 13:35:43,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:36:22] 2025-10-12 13:35:44,245 | INFO     | PID=22946 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 09:36:22] 2025-10-12 13:35:45,018 | INFO     | job 6839659063 has state=finished
[2025-10-12 09:36:22] 2025-10-12 13:35:45,019 | INFO     | preparing for final server update for job 6839659063 in state='finished'
[2025-10-12 09:36:22] 2025-10-12 13:35:45,019 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:36:22] 2025-10-12 13:35:45,019 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:36:22] 2025-10-12 13:35:45,019 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:36:22] 2025-10-12 13:35:45,020 | INFO     | job 6839659063 has finished - writing final server update
[2025-10-12 09:36:22] 2025-10-12 13:35:45,020 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:36:22] 2025-10-12 13:35:45,021 | INFO     | executing command: lscpu
[2025-10-12 09:36:22] 2025-10-12 13:35:45,050 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:36:22] 2025-10-12 13:35:45,246 | INFO     | time since job start (4371s) is within the limit (172800.0s)
[2025-10-12 09:36:22] 2025-10-12 13:35:46,096 | INFO     | monitor loop #327: job 0:6839659063 is in state 'finished'
[2025-10-12 09:36:22] 2025-10-12 13:35:46,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:36:22] 2025-10-12 13:35:47,249 | INFO     | time since job start (4373s) is within the limit (172800.0s)
[2025-10-12 09:36:22] 2025-10-12 13:35:48,599 | INFO     | monitor loop #328: job 0:6839659063 is in state 'finished'
[2025-10-12 09:36:22] 2025-10-12 13:35:48,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,254 | INFO     | time since job start (4375s) is within the limit (172800.0s)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,712 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 09:36:22] 2025-10-12 13:35:49,715 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,717 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839659063/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,717 | INFO     | extracted standard info from prmon json
[2025-10-12 09:36:22] 2025-10-12 13:35:49,718 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:36:22] 2025-10-12 13:35:49,718 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:36:22] 2025-10-12 13:35:49,718 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:36:22] 2025-10-12 13:35:49,718 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:36:22] 2025-10-12 13:35:49,719 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:36:22] 2025-10-12 13:35:49,720 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,720 | INFO     | sum of deviations: -6218065621.999998
[2025-10-12 09:36:22] 2025-10-12 13:35:49,720 | INFO     | mean x: 1760274060.0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,720 | INFO     | mean y: 2878878.7538461536
[2025-10-12 09:36:22] 2025-10-12 13:35:49,720 | INFO     | -- intersect: 128567033959.9172
[2025-10-12 09:36:22] 2025-10-12 13:35:49,720 | INFO     | intersect: 128567033959.9172
[2025-10-12 09:36:22] 2025-10-12 13:35:49,721 | INFO     | chi2: 0.0717718278094479
[2025-10-12 09:36:22] 2025-10-12 13:35:49,721 | INFO     | -- intersect: 128567033959.9172
[2025-10-12 09:36:22] 2025-10-12 13:35:49,721 | INFO     | current memory leak: -73.04 B/s (using 65 data points, chi2=0.07)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,721 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,721 | INFO     | ..............................
[2025-10-12 09:36:22] 2025-10-12 13:35:49,721 | INFO     | . Timing measurements:
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | . get job = 0 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | . initial setup = 2 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | . payload setup = 7 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | . stage-in = 0 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | . payload execution = 4340 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | . stage-out = 0 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | . log creation = 0 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,722 | INFO     | ..............................
[2025-10-12 09:36:22] 2025-10-12 13:35:49,805 | INFO     | 
[2025-10-12 09:36:22] 2025-10-12 13:35:49,805 | INFO     | job summary report
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | --------------------------------------------------
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | PanDA job id: 6839659063
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | task id: 46676269
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | errors: (none)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | pilot state: finished 
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | transexitcode: 0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | exeerrorcode: 0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | exeerrordiag: 
[2025-10-12 09:36:22] 2025-10-12 13:35:49,806 | INFO     | exitcode: 0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | exitmsg: OK
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | cpuconsumptiontime: 46054 s
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | nevents: 400
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | neventsw: 0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | pid: 29389
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | pgrp: 29389
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | corecount: 12
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | event service: False
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 4351: 2375252, 4352: 2384434, 4359: 2384572}
[2025-10-12 09:36:22] 2025-10-12 13:35:49,807 | INFO     | --------------------------------------------------
[2025-10-12 09:36:22] 2025-10-12 13:35:49,808 | INFO     | 
[2025-10-12 09:36:22] 2025-10-12 13:35:49,808 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 09:36:22] 2025-10-12 13:35:49,831 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,831 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,831 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,831 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,831 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,833 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:36:22] 2025-10-12 13:35:49,834 | INFO     | job 6839659063 has completed (purged errors)
[2025-10-12 09:36:22] 2025-10-12 13:35:49,834 | INFO     | overall cleanup function is called
[2025-10-12 09:36:22] 2025-10-12 13:35:50,842 | INFO     | --- collectZombieJob: --- 10, [29389]
[2025-10-12 09:36:22] 2025-10-12 13:35:50,842 | INFO     | zombie collector waiting for pid 29389
[2025-10-12 09:36:22] 2025-10-12 13:35:50,843 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:36:22] 2025-10-12 13:35:50,843 | INFO     | collected zombie processes
[2025-10-12 09:36:22] 2025-10-12 13:35:50,843 | INFO     | will attempt to kill all subprocesses of pid=29389
[2025-10-12 09:36:22] 2025-10-12 13:35:50,931 | INFO     | process IDs to be killed: [29389] (in reverse order)
[2025-10-12 09:36:22] 2025-10-12 13:35:50,982 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:36:22] 2025-10-12 13:35:50,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:36:22] 2025-10-12 13:35:50,986 | INFO     | did not find any defunct processes belonging to 29389
[2025-10-12 09:36:22] 2025-10-12 13:35:50,988 | INFO     | did not find any defunct processes belonging to 29389
[2025-10-12 09:36:22] 2025-10-12 13:35:50,988 | INFO     | ready for new job
[2025-10-12 09:36:22] 2025-10-12 13:35:50,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:36:22] 2025-10-12 13:35:50,989 | INFO     | ***************************************
[2025-10-12 09:36:22] 2025-10-12 13:35:50,989 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:36:22] 2025-10-12 13:35:50,989 | INFO     | ***************************************
[2025-10-12 09:36:22] 2025-10-12 13:35:50,990 | INFO     | 
[2025-10-12 09:36:22] 2025-10-12 13:35:50,990 | INFO     | architecture information:
[2025-10-12 09:36:22] 2025-10-12 13:35:50,991 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:36:22] 2025-10-12 13:35:51,004 | INFO     | cat /etc/os-release:
[2025-10-12 09:36:22] NAME="CentOS Linux"
[2025-10-12 09:36:22] VERSION="7 (Core)"
[2025-10-12 09:36:22] ID="centos"
[2025-10-12 09:36:22] ID_LIKE="rhel fedora"
[2025-10-12 09:36:22] VERSION_ID="7"
[2025-10-12 09:36:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:36:22] ANSI_COLOR="0;31"
[2025-10-12 09:36:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:36:22] HOME_URL="https://www.centos.org/"
[2025-10-12 09:36:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:36:22] 
[2025-10-12 09:36:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:36:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:36:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:36:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:36:22] 
[2025-10-12 09:36:22] 2025-10-12 13:35:51,004 | INFO     | ***************************************
[2025-10-12 09:36:22] 2025-10-12 13:35:51,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 09:36:22] 2025-10-12 13:35:51,523 | INFO     | sufficient remaining disk space (29366419456 B)
[2025-10-12 09:36:22] 2025-10-12 13:35:51,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:36:22] 2025-10-12 13:35:51,524 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:36:22] 2025-10-12 13:35:51,524 | INFO     | update_server=False
[2025-10-12 09:36:22] 2025-10-12 13:35:51,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:36:22] 2025-10-12 13:35:51,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:36:22] 2025-10-12 13:35:51,525 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:36:22] 2025-10-12 13:35:51,612 | INFO     | all data control threads have been joined
[2025-10-12 09:36:22] 2025-10-12 13:35:51,798 | INFO     | all payload control threads have been joined
[2025-10-12 09:36:22] 2025-10-12 13:35:52,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:36:22] 2025-10-12 13:35:52,108 | INFO     | aborting loop
[2025-10-12 09:36:22] 2025-10-12 13:35:52,460 | INFO     | all job control threads have been joined
[2025-10-12 09:36:22] 2025-10-12 13:35:52,530 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:52,530 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:52,618 | INFO     | [data] control thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:52,803 | INFO     | [payload] control thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:52,824 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:52,868 | INFO     | [job] validate thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,113 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,217 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,237 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,264 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,465 | INFO     | [job] control thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,530 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,772 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:53,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:36:22] 2025-10-12 13:35:53,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:54,007 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:35:57,864 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:36:22] 2025-10-12 13:36:01,227 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:36:22] 2025-10-12 13:36:01,324 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140297606969152)>', '<ExcThread(monitor, started 140297170310912)>']
[2025-10-12 09:36:22] 2025-10-12 13:36:06,352 | INFO     | all workflow threads have been joined
[2025-10-12 09:36:22] 2025-10-12 13:36:06,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:36:22] 2025-10-12 13:36:06,354 | INFO     | traces error code: 0
[2025-10-12 09:36:22] 2025-10-12 13:36:06,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:36:22] 2025-10-12 13:36:22,467 | INFO     | PID=22946 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 09:36:22] 2025-10-12 13:36:22,468 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:36:22] 2025-10-12 13:36:22,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:36:22] 2025-10-12 13:36:22,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:36:22] 2025-10-12 13:36:22,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:36:22] 2025-10-12 13:36:22,468 | INFO     | [monitor] control thread has ended
[2025-10-12 09:36:22] 2025-10-12 13:36:22,561 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:36:22] 2025-10-12 13:36:22,564 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:36:22] 2025-10-12 13:36:22,568 [wrapper] pilotpid: 22946
[2025-10-12 09:36:22] 2025-10-12 13:36:22,572 [wrapper] Pilot exit status: 0
[2025-10-12 09:36:22] 2025-10-12 13:36:22,586 [wrapper] pandaids: 6839659063
[2025-10-12 09:36:22] 2025-10-12 13:36:22,625 [wrapper] cleanup supervisor_pilot  9513 22947
[2025-10-12 09:36:22] 2025-10-12 13:36:22,629 [wrapper] Test setup, not cleaning
[2025-10-12 09:36:22] 2025-10-12 13:36:22,632 [wrapper] apfmon messages muted
[2025-10-12 09:36:22] 2025-10-12 13:36:22,636 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:36:22] 2025-10-12 13:36:22,640 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:36:22]  *** Error codes and diagnostics ***
[2025-10-12 09:36:22]     "exeErrorCode": 0,
[2025-10-12 09:36:22]     "exeErrorDiag": "",
[2025-10-12 09:36:22]     "pilotErrorCode": 0,
[2025-10-12 09:36:22]     "pilotErrorDiag": "",
[2025-10-12 09:36:22]  *** Listing of results directory ***
[2025-10-12 09:36:22] total 407496
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 09:36:22] -rwx------ 1 boincer umatlas     36292 Oct 12 03:35 runpilot2-wrapper.sh
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 03:35 queuedata.json
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas       100 Oct 12 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:36:22] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 08:22 run_atlas
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas       105 Oct 12 08:22 job.xml
[2025-10-12 09:36:22] -rw-r--r-- 2 boincer umatlas 220401935 Oct 12 08:22 EVNT.46676267._003502.pool.root.1
[2025-10-12 09:36:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:22 start_atlas.sh
[2025-10-12 09:36:22] drwxrwx--x 2 boincer umatlas      4096 Oct 12 08:22 shared
[2025-10-12 09:36:22] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 08:22 input.tar.gz
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas         0 Oct 12 08:22 boinc_lockfile
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 08:22 pandaJob.out
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas    975512 Oct 12 08:22 agis_schedconf.cvmfs.json
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas   1560580 Oct 12 08:22 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:36:22] drwx------ 5 boincer umatlas      4096 Oct 12 08:22 pilot3
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 09:27 init_data.xml
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas 190942553 Oct 12 09:35 HITS.46676269._073544.pool.root.1
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas       530 Oct 12 09:35 boinc_task_state.xml
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas      1051 Oct 12 09:35 memory_monitor_summary.json
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas    374940 Oct 12 09:35 log.46676269._073544.job.log.tgz.1
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas      7858 Oct 12 09:35 heartbeat.json
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas        95 Oct 12 09:35 pilot_heartbeat.json
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas        27 Oct 12 09:36 wrapper_checkpoint.txt
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 09:36 boinc_mmap_file
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas       745 Oct 12 09:36 pilotlog.txt
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas    636041 Oct 12 09:36 log.46676269._073544.job.log.1
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas       357 Oct 12 09:36 output.list
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas       620 Oct 12 09:36 runtime_log
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas   1034240 Oct 12 09:36 result.tar.gz
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 09:36 runtime_log.err
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas       659 Oct 12 09:36 doSMDmOn5R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmESTMDmKRyhZn.diag
[2025-10-12 09:36:22] -rw-r--r-- 1 boincer umatlas     21933 Oct 12 09:36 stderr.txt
[2025-10-12 09:36:22] HITS file was successfully produced:
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas 190942553 Oct 12 09:35 shared/HITS.pool.root.1
[2025-10-12 09:36:22]  *** Contents of shared directory: ***
[2025-10-12 09:36:22] total 403304
[2025-10-12 09:36:22] -rw-r--r-- 2 boincer umatlas 220401935 Oct 12 08:22 ATLAS.root_0
[2025-10-12 09:36:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:22 start_atlas.sh
[2025-10-12 09:36:22] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 08:22 input.tar.gz
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas 190942553 Oct 12 09:35 HITS.pool.root.1
[2025-10-12 09:36:22] -rw------- 1 boincer umatlas   1034240 Oct 12 09:36 result.tar.gz
09:36:24 (18985): run_atlas exited; CPU time 46020.744168
09:36:24 (18985): called boinc_finish(0)

</stderr_txt>
]]>

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