Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
16:11:19 (31045): wrapper (7.7.26015): starting
16:11:19 (31045): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:11:19] Arguments: --nthreads 8
[2025-10-12 16:11:19] Threads: 8
[2025-10-12 16:11:19] Checking for CVMFS
[2025-10-12 16:11:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:11:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:11:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:11:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:11:19] 2.11.0.0 4057 617 54456 151622 2 188 1805951 4096001 3697 130560 0 210511 96.927 689920 1097 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 16:11:19] CVMFS is ok
[2025-10-12 16:11:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:11:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:11:19] Further information can be found at the LHC@home message board.
[2025-10-12 16:11:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:11:19] Checking for apptainer binary...
[2025-10-12 16:11:19] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 16:11:19] apptainer is not installed, using version from CVMFS
[2025-10-12 16:11:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:11:20] WARNING: Environment variable TMPDIR already has value [/tmp/job_10510987/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node059
[2025-10-12 16:11:20] apptainer works
[2025-10-12 16:11:20] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:11:20] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:11:20] Starting ATLAS job with PandaID=6839386585
[2025-10-12 16:11:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10510987/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:17:51]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:17:51]  lfn=log.46676269._070881.job.log.tgz.1
[2025-10-12 17:17:51]  mtime=0
[2025-10-12 17:17:51]  protocol_id=None
[2025-10-12 17:17:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 17:17:51]  replicas=None
[2025-10-12 17:17:51]  scope=mc23_13p6TeV
[2025-10-12 17:17:51]  status=None
[2025-10-12 17:17:51]  status_code=0
[2025-10-12 17:17:51]  storage_token=
[2025-10-12 17:17:51]  surl=/tmp/job_10510987/atlas/pilot/slots/0/PanDA_Pilot-6839386585/log.46676269._070881.job.log.tgz.1
[2025-10-12 17:17:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c7/ae/log.46676269._070881.job.log.tgz.1
[2025-10-12 17:17:51]  workdir=None
[2025-10-12 17:17:51] ]
[2025-10-12 17:17:51] 2025-10-12 15:17:17,127 | INFO     | transferring file log.46676269._070881.job.log.tgz.1 from /tmp/job_10510987/atlas/pilot/slots/0/PanDA_Pilot-6839386585/log.46676269._070881.job.log.tgz.1 to /tmp/j
[2025-10-12 17:17:51] 2025-10-12 15:17:17,127 | INFO     | executing command: /usr/bin/env mv /tmp/job_10510987/atlas/pilot/slots/0/PanDA_Pilot-6839386585/log.46676269._070881.job.log.tgz.1 /tmp/job_10510987/atlas/pilot/sl
[2025-10-12 17:17:51] 2025-10-12 15:17:17,137 | INFO     | adding to output.list: log.46676269._070881.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c7/ae/log.46676269._070881.job.log.tg
[2025-10-12 17:17:51] 2025-10-12 15:17:17,137 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:17:51] 2025-10-12 15:17:17,137 | INFO     | summary of transferred files:
[2025-10-12 17:17:51] 2025-10-12 15:17:17,137 | INFO     |  -- lfn=log.46676269._070881.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:17:51] 2025-10-12 15:17:17,138 | INFO     | stage-out finished correctly
[2025-10-12 17:17:51] 2025-10-12 15:17:17,210 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:17:51] 2025-10-12 15:17:17,889 | INFO     | job 6839386585 has state=finished
[2025-10-12 17:17:51] 2025-10-12 15:17:17,889 | INFO     | preparing for final server update for job 6839386585 in state='finished'
[2025-10-12 17:17:51] 2025-10-12 15:17:17,890 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:17:51] 2025-10-12 15:17:17,890 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:17:51] 2025-10-12 15:17:17,890 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:17:51] 2025-10-12 15:17:17,890 | INFO     | job 6839386585 has finished - writing final server update
[2025-10-12 17:17:51] 2025-10-12 15:17:17,890 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:17:51] 2025-10-12 15:17:17,890 | INFO     | executing command: lscpu
[2025-10-12 17:17:51] 2025-10-12 15:17:17,926 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:17:51] 2025-10-12 15:17:18,426 | INFO     | time since job start (3952s) is within the limit (172800.0s)
[2025-10-12 17:17:51] 2025-10-12 15:17:19,451 | INFO     | monitor loop #289: job 0:6839386585 is in state 'finished'
[2025-10-12 17:17:51] 2025-10-12 15:17:19,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:17:51] 2025-10-12 15:17:20,006 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:17:51] 2025-10-12 15:17:20,024 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2349.82559375
[2025-10-12 17:17:51] 2025-10-12 15:17:20,031 | INFO     | using path: /tmp/job_10510987/atlas/pilot/slots/0/PanDA_Pilot-6839386585/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:17:51] 2025-10-12 15:17:20,032 | INFO     | extracted standard info from prmon json
[2025-10-12 17:17:51] 2025-10-12 15:17:20,032 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:17:51] 2025-10-12 15:17:20,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:17:51] 2025-10-12 15:17:20,032 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:17:51] 2025-10-12 15:17:20,032 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:17:51] 2025-10-12 15:17:20,033 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | sum of square deviations: 60482994.5
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | sum of deviations: 432982635.99999994
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | mean x: 1760280348.5
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | mean y: 2530726.620689655
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | -- intersect: -12598876192.683355
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | intersect: -12598876192.683355
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | chi2: 0.002015445867722708
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | -- intersect: -12598876192.683355
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | current memory leak: 7.16 B/s (using 58 data points, chi2=0.00)
[2025-10-12 17:17:51] 2025-10-12 15:17:20,034 | INFO     | could have reported an average CPU frequency of 2349 MHz (6 samples)
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | ..............................
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . Timing measurements:
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . get job = 0 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . initial setup = 1 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . payload setup = 3 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . stage-in = 0 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . payload execution = 3930 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . stage-out = 0 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | . log creation = 0 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,035 | INFO     | ..............................
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | 
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | job summary report
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | --------------------------------------------------
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | PanDA job id: 6839386585
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | task id: 46676269
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | errors: (none)
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | pilot state: finished 
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | transexitcode: 0
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | exeerrorcode: 0
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | exeerrordiag: 
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | exitcode: 0
[2025-10-12 17:17:51] 2025-10-12 15:17:20,104 | INFO     | exitmsg: OK
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | cpuconsumptiontime: 27834 s
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | nevents: 400
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | neventsw: 0
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | pid: 1545
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | pgrp: 1545
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | corecount: 8
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | event service: False
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | sizes: {0: 2348983, 3: 2349245, 11: 2349273, 3937: 2375257, 3938: 2384341, 3941: 2384479}
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | --------------------------------------------------
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | 
[2025-10-12 17:17:51] 2025-10-12 15:17:20,105 | INFO     | executing command: ls -lF /tmp/job_10510987/atlas/pilot/slots/0
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | job 6839386585 has completed (purged errors)
[2025-10-12 17:17:51] 2025-10-12 15:17:20,116 | INFO     | overall cleanup function is called
[2025-10-12 17:17:51] 2025-10-12 15:17:21,121 | INFO     | --- collectZombieJob: --- 10, [1545]
[2025-10-12 17:17:51] 2025-10-12 15:17:21,121 | INFO     | zombie collector waiting for pid 1545
[2025-10-12 17:17:51] 2025-10-12 15:17:21,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:17:51] 2025-10-12 15:17:21,121 | INFO     | collected zombie processes
[2025-10-12 17:17:51] 2025-10-12 15:17:21,121 | INFO     | will attempt to kill all subprocesses of pid=1545
[2025-10-12 17:17:51] 2025-10-12 15:17:21,254 | INFO     | process IDs to be killed: [1545] (in reverse order)
[2025-10-12 17:17:51] 2025-10-12 15:17:21,297 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:17:51] 2025-10-12 15:17:21,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:17:51] 2025-10-12 15:17:21,302 | INFO     | did not find any defunct processes belonging to 1545
[2025-10-12 17:17:51] 2025-10-12 15:17:21,305 | INFO     | did not find any defunct processes belonging to 1545
[2025-10-12 17:17:51] 2025-10-12 15:17:21,306 | INFO     | ready for new job
[2025-10-12 17:17:51] 2025-10-12 15:17:21,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:17:51] 2025-10-12 15:17:21,306 | INFO     | ***************************************
[2025-10-12 17:17:51] 2025-10-12 15:17:21,307 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:17:51] 2025-10-12 15:17:21,307 | INFO     | ***************************************
[2025-10-12 17:17:51] 2025-10-12 15:17:21,307 | INFO     | 
[2025-10-12 17:17:51] 2025-10-12 15:17:21,321 | INFO     | architecture information:
[2025-10-12 17:17:51] 2025-10-12 15:17:21,321 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:17:51] 2025-10-12 15:17:21,329 | INFO     | cat /etc/os-release:
[2025-10-12 17:17:51] NAME="CentOS Linux"
[2025-10-12 17:17:51] VERSION="7 (Core)"
[2025-10-12 17:17:51] ID="centos"
[2025-10-12 17:17:51] ID_LIKE="rhel fedora"
[2025-10-12 17:17:51] VERSION_ID="7"
[2025-10-12 17:17:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:17:51] ANSI_COLOR="0;31"
[2025-10-12 17:17:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:17:51] HOME_URL="https://www.centos.org/"
[2025-10-12 17:17:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:17:51] 
[2025-10-12 17:17:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:17:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:17:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:17:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:17:51] 
[2025-10-12 17:17:51] 2025-10-12 15:17:21,329 | INFO     | ***************************************
[2025-10-12 17:17:51] 2025-10-12 15:17:21,831 | INFO     | executing command: df -mP /tmp/job_10510987/atlas/pilot/slots/0
[2025-10-12 17:17:51] 2025-10-12 15:17:21,839 | INFO     | sufficient remaining disk space (226777628672 B)
[2025-10-12 17:17:51] 2025-10-12 15:17:21,839 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:17:51] 2025-10-12 15:17:21,839 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:17:51] 2025-10-12 15:17:21,839 | INFO     | update_server=False
[2025-10-12 17:17:51] 2025-10-12 15:17:21,839 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:17:51] 2025-10-12 15:17:21,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:17:51] 2025-10-12 15:17:21,954 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:17:51] 2025-10-12 15:17:21,954 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:17:51] 2025-10-12 15:17:21,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:17:51] 2025-10-12 15:17:21,954 | INFO     | will abort loop
[2025-10-12 17:17:51] 2025-10-12 15:17:22,624 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:17:51] 2025-10-12 15:17:22,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:17:51] 2025-10-12 15:17:22,797 | INFO     | all data control threads have been joined
[2025-10-12 17:17:51] 2025-10-12 15:17:22,844 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:22,845 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:22,959 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:23,058 | INFO     | all payload control threads have been joined
[2025-10-12 17:17:51] 2025-10-12 15:17:23,198 | INFO     | all job control threads have been joined
[2025-10-12 17:17:51] 2025-10-12 15:17:23,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:17:51] 2025-10-12 15:17:23,374 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:23,562 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:23,629 | INFO     | [job] validate thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:23,629 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:23,802 | INFO     | [data] control thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:23,837 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:23,976 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:24,063 | INFO     | [payload] control thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:24,158 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:24,203 | INFO     | [job] control thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:24,378 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:24,723 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:27,289 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:17:51] 2025-10-12 15:17:31,882 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:17:51] 2025-10-12 15:17:33,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064669440)>']
[2025-10-12 17:17:51] 2025-10-12 15:17:38,188 | INFO     | all workflow threads have been joined
[2025-10-12 17:17:51] 2025-10-12 15:17:38,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:17:51] 2025-10-12 15:17:38,189 | INFO     | traces error code: 0
[2025-10-12 17:17:51] 2025-10-12 15:17:38,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:17:51] 2025-10-12 15:17:51,658 | INFO     | PID=5628 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 17:17:51] 2025-10-12 15:17:51,658 | INFO     | .. there are 2 such processes running
[2025-10-12 17:17:51] 2025-10-12 15:17:51,658 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:17:51] 2025-10-12 15:17:51,658 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:17:51] 2025-10-12 15:17:51,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:17:51] 2025-10-12 15:17:51,658 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:17:51] 2025-10-12 15:17:51,658 | INFO     | [monitor] control thread has ended
[2025-10-12 17:17:51] 2025-10-12 15:17:51,719 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:17:51] 2025-10-12 15:17:51,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:17:51] 2025-10-12 15:17:51,722 [wrapper] pilotpid: 5628
[2025-10-12 17:17:51] 2025-10-12 15:17:51,724 [wrapper] Pilot exit status: 0
[2025-10-12 17:17:51] 2025-10-12 15:17:51,729 [wrapper] pandaids: 6839386585
[2025-10-12 17:17:51] 2025-10-12 15:17:51,755 [wrapper] cleanup supervisor_pilot 14409 5629
[2025-10-12 17:17:51] 2025-10-12 15:17:51,756 [wrapper] Test setup, not cleaning
[2025-10-12 17:17:51] 2025-10-12 15:17:51,758 [wrapper] apfmon messages muted
[2025-10-12 17:17:51] 2025-10-12 15:17:51,759 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:17:51] 2025-10-12 15:17:51,761 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:17:51]  *** Error codes and diagnostics ***
[2025-10-12 17:17:51]     "exeErrorCode": 0,
[2025-10-12 17:17:51]     "exeErrorDiag": "",
[2025-10-12 17:17:51]     "pilotErrorCode": 0,
[2025-10-12 17:17:51]     "pilotErrorDiag": "",
[2025-10-12 17:17:51]  *** Listing of results directory ***
[2025-10-12 17:17:51] total 407892
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user    557409 Oct 12 06:11 pilot3.tar.gz
[2025-10-12 17:17:51] -rwx------ 1 mf493845 unix-user     36292 Oct 12 06:14 runpilot2-wrapper.sh
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user      5112 Oct 12 06:14 queuedata.json
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user       100 Oct 12 15:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:17:51] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 15:14 run_atlas
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user       105 Oct 12 15:14 job.xml
[2025-10-12 17:17:51] -rw-r--r-- 2 mf493845 unix-user 222477559 Oct 12 16:11 EVNT.46676267._003262.pool.root.1
[2025-10-12 17:17:51] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 16:11 start_atlas.sh
[2025-10-12 17:17:51] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 16:11 shared
[2025-10-12 17:17:51] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 12 16:11 input.tar.gz
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user      6391 Oct 12 16:11 init_data.xml
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user         0 Oct 12 16:11 boinc_setup_complete
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user      8192 Oct 12 16:11 boinc_mmap_file
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user         0 Oct 12 16:11 boinc_lockfile
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user      2550 Oct 12 16:11 pandaJob.out
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user    975528 Oct 12 16:11 agis_schedconf.cvmfs.json
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user   1560580 Oct 12 16:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:17:51] drwx------ 5 mf493845 unix-user       440 Oct 12 16:11 pilot3
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user 189506174 Oct 12 17:16 HITS.46676269._070881.pool.root.1
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user      1014 Oct 12 17:17 memory_monitor_summary.json
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user    305237 Oct 12 17:17 log.46676269._070881.job.log.tgz.1
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user      7764 Oct 12 17:17 heartbeat.json
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user       819 Oct 12 17:17 pilotlog.txt
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user        95 Oct 12 17:17 pilot_heartbeat.json
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user    602579 Oct 12 17:17 log.46676269._070881.job.log.1
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user       357 Oct 12 17:17 output.list
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user       620 Oct 12 17:17 runtime_log
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user    931840 Oct 12 17:17 result.tar.gz
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user      9076 Oct 12 17:17 runtime_log.err
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user       641 Oct 12 17:17 P9bKDmKe2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgBTMDm3XKQMo.diag
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user     22028 Oct 12 17:17 stderr.txt
[2025-10-12 17:17:51] HITS file was successfully produced:
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user 189506174 Oct 12 17:16 shared/HITS.pool.root.1
[2025-10-12 17:17:51]  *** Contents of shared directory: ***
[2025-10-12 17:17:51] total 403820
[2025-10-12 17:17:51] -rw-r--r-- 2 mf493845 unix-user 222477559 Oct 12 16:11 ATLAS.root_0
[2025-10-12 17:17:51] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 16:11 start_atlas.sh
[2025-10-12 17:17:51] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 12 16:11 input.tar.gz
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user 189506174 Oct 12 17:16 HITS.pool.root.1
[2025-10-12 17:17:51] -rw------- 1 mf493845 unix-user    931840 Oct 12 17:17 result.tar.gz
17:17:53 (31045): run_atlas exited; CPU time 27915.876173
17:17:53 (31045): called boinc_finish(0)

</stderr_txt>
]]>

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