Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:36:38 (1850897): wrapper (7.7.26015): starting
08:36:38 (1850897): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 08:36:38] Arguments: --nthreads 8
[2025-10-12 08:36:38] Threads: 8
[2025-10-12 08:36:38] Checking for CVMFS
[2025-10-12 08:36:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:36:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:36:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:36:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:36:40] 2.13.2.0 7534 77345 135168 151620 0 378 36973640 40960001 32244 16776704 0 464571307 99.773 264874284 44651 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:36:40] CVMFS is ok
[2025-10-12 08:36:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:36:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:36:40] Further information can be found at the LHC@home message board.
[2025-10-12 08:36:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:36:40] Checking for apptainer binary...
[2025-10-12 08:36:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:36:40] Running /usr/bin/apptainer --version
[2025-10-12 08:36:40] apptainer version 1.4.3-1.el9
[2025-10-12 08:36:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:36:41] c-208-39.aglt2.org
[2025-10-12 08:36:41] apptainer works
[2025-10-12 08:36:41] Set ATHENA_PROC_NUMBER=8
[2025-10-12 08:36:41] Set ATHENA_CORE_NUMBER=8
[2025-10-12 08:36:41] Starting ATLAS job with PandaID=6839387219
[2025-10-12 08:36:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:02:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:02:19] 2025-10-12 14:01:25,714 | INFO     | job 6839387219 has state=finished
[2025-10-12 10:02:19] 2025-10-12 14:01:25,714 | INFO     | preparing for final server update for job 6839387219 in state='finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:25,818 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 10:02:19] 2025-10-12 14:01:25,818 | INFO     | this job has now completed (state=finished)
[2025-10-12 10:02:19] 2025-10-12 14:01:25,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 10:02:19] 2025-10-12 14:01:25,818 | INFO     | log transfer has been attempted: DONE
[2025-10-12 10:02:19] 2025-10-12 14:01:25,818 | INFO     | job 6839387219 has finished - writing final server update
[2025-10-12 10:02:19] 2025-10-12 14:01:25,819 | INFO     | total number of processed events: 400 (read)
[2025-10-12 10:02:19] 2025-10-12 14:01:25,836 | INFO     | executing command: lscpu
[2025-10-12 10:02:19] 2025-10-12 14:01:25,974 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 10:02:19] 2025-10-12 14:01:26,879 | INFO     | time since job start (5018s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:27,340 | INFO     | monitor loop #342: job 0:6839387219 is in state 'finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:27,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:19] 2025-10-12 14:01:28,888 | INFO     | time since job start (5020s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:29,858 | INFO     | monitor loop #343: job 0:6839387219 is in state 'finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:29,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:19] 2025-10-12 14:01:30,905 | INFO     | time since job start (5022s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:32,386 | INFO     | monitor loop #344: job 0:6839387219 is in state 'finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:32,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:19] 2025-10-12 14:01:32,912 | INFO     | time since job start (5024s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:34,905 | INFO     | monitor loop #345: job 0:6839387219 is in state 'finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:34,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:19] 2025-10-12 14:01:35,032 | INFO     | PID=1857555 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:02:19] 2025-10-12 14:01:35,032 | INFO     | .. there are 31 such processes running
[2025-10-12 10:02:19] 2025-10-12 14:01:36,033 | INFO     | time since job start (5028s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:37,418 | INFO     | monitor loop #346: job 0:6839387219 is in state 'finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:37,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:19] 2025-10-12 14:01:38,040 | INFO     | time since job start (5030s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:39,936 | INFO     | monitor loop #347: job 0:6839387219 is in state 'finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:39,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:19] 2025-10-12 14:01:40,050 | INFO     | time since job start (5032s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:42,058 | INFO     | time since job start (5034s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:42,441 | INFO     | monitor loop #348: job 0:6839387219 is in state 'finished'
[2025-10-12 10:02:19] 2025-10-12 14:01:42,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,065 | INFO     | time since job start (5036s) is within the limit (172800.0s)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,254 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 10:02:19] 2025-10-12 14:01:44,260 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3636.1265937499993
[2025-10-12 10:02:19] 2025-10-12 14:01:44,272 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6839387219/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,273 | INFO     | extracted standard info from prmon json
[2025-10-12 10:02:19] 2025-10-12 14:01:44,273 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:02:19] 2025-10-12 14:01:44,273 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:02:19] 2025-10-12 14:01:44,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:02:19] 2025-10-12 14:01:44,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:02:19] 2025-10-12 14:01:44,274 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:02:19] 2025-10-12 14:01:44,274 | INFO     | sum of square deviations: 120605052.0
[2025-10-12 10:02:19] 2025-10-12 14:01:44,274 | INFO     | sum of deviations: -2649130631.0
[2025-10-12 10:02:19] 2025-10-12 14:01:44,274 | INFO     | mean x: 1760275309.0
[2025-10-12 10:02:19] 2025-10-12 14:01:44,274 | INFO     | mean y: 2533195.2739726026
[2025-10-12 10:02:19] 2025-10-12 14:01:44,274 | INFO     | -- intersect: 38667573860.94103
[2025-10-12 10:02:19] 2025-10-12 14:01:44,274 | INFO     | intersect: 38667573860.94103
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | chi2: 0.03310805739024661
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | -- intersect: 38667573860.94103
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | current memory leak: -21.97 B/s (using 73 data points, chi2=0.03)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | could have reported an average CPU frequency of 3662 MHz (6 samples)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | ..............................
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . Timing measurements:
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . get job = 0 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . initial setup = 6 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . payload setup = 45 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . stage-in = 0 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . payload execution = 4901 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . stage-out = 1 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | . log creation = 0 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,275 | INFO     | ..............................
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | 
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | job summary report
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | --------------------------------------------------
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | PanDA job id: 6839387219
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | task id: 46676269
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | errors: (none)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | pilot state: finished 
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | transexitcode: 0
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | exeerrorcode: 0
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | exeerrordiag: 
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | exitcode: 0
[2025-10-12 10:02:19] 2025-10-12 14:01:44,325 | INFO     | exitmsg: OK
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | cpuconsumptiontime: 24841 s
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | nevents: 400
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | neventsw: 0
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | pid: 1879680
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | pgrp: 1879680
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | corecount: 8
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | event service: False
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | sizes: {0: 2348857, 1: 2348857, 11: 2348885, 22: 2348913, 31: 2349203, 33: 2349231, 4950: 2375746, 4953: 2384744, 4954: 2384800, 4972: 2384994}
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | --------------------------------------------------
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | 
[2025-10-12 10:02:19] 2025-10-12 14:01:44,326 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-10-12 10:02:19] 2025-10-12 14:01:44,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:02:19] 2025-10-12 14:01:44,352 | INFO     | job 6839387219 has completed (purged errors)
[2025-10-12 10:02:19] 2025-10-12 14:01:44,353 | INFO     | overall cleanup function is called
[2025-10-12 10:02:19] 2025-10-12 14:01:45,361 | INFO     | --- collectZombieJob: --- 10, [1879680]
[2025-10-12 10:02:19] 2025-10-12 14:01:45,361 | INFO     | zombie collector waiting for pid 1879680
[2025-10-12 10:02:19] 2025-10-12 14:01:45,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:02:19] 2025-10-12 14:01:45,361 | INFO     | collected zombie processes
[2025-10-12 10:02:19] 2025-10-12 14:01:45,361 | INFO     | will attempt to kill all subprocesses of pid=1879680
[2025-10-12 10:02:19] 2025-10-12 14:01:45,790 | INFO     | process IDs to be killed: [1879680] (in reverse order)
[2025-10-12 10:02:19] 2025-10-12 14:01:45,934 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:02:19] 2025-10-12 14:01:45,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:02:19] 2025-10-12 14:01:45,955 | INFO     | did not find any defunct processes belonging to 1879680
[2025-10-12 10:02:19] 2025-10-12 14:01:45,979 | INFO     | did not find any defunct processes belonging to 1879680
[2025-10-12 10:02:19] 2025-10-12 14:01:45,979 | INFO     | ready for new job
[2025-10-12 10:02:19] 2025-10-12 14:01:45,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:02:19] 2025-10-12 14:01:45,981 | INFO     | ***************************************
[2025-10-12 10:02:19] 2025-10-12 14:01:45,981 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:02:19] 2025-10-12 14:01:45,981 | INFO     | ***************************************
[2025-10-12 10:02:19] 2025-10-12 14:01:45,981 | INFO     | 
[2025-10-12 10:02:19] 2025-10-12 14:01:45,985 | INFO     | architecture information:
[2025-10-12 10:02:19] 2025-10-12 14:01:45,985 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:02:19] 2025-10-12 14:01:46,003 | INFO     | cat /etc/os-release:
[2025-10-12 10:02:19] NAME="CentOS Linux"
[2025-10-12 10:02:19] VERSION="7 (Core)"
[2025-10-12 10:02:19] ID="centos"
[2025-10-12 10:02:19] ID_LIKE="rhel fedora"
[2025-10-12 10:02:19] VERSION_ID="7"
[2025-10-12 10:02:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:02:19] ANSI_COLOR="0;31"
[2025-10-12 10:02:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:02:19] HOME_URL="https://www.centos.org/"
[2025-10-12 10:02:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:02:19] 
[2025-10-12 10:02:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:02:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:02:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:02:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:02:19] 
[2025-10-12 10:02:19] 2025-10-12 14:01:46,003 | INFO     | ***************************************
[2025-10-12 10:02:19] 2025-10-12 14:01:46,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-10-12 10:02:19] 2025-10-12 14:01:46,589 | INFO     | sufficient remaining disk space (169537961984 B)
[2025-10-12 10:02:19] 2025-10-12 14:01:46,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:02:19] 2025-10-12 14:01:46,589 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:02:19] 2025-10-12 14:01:46,589 | INFO     | update_server=False
[2025-10-12 10:02:19] 2025-10-12 14:01:46,590 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:02:19] 2025-10-12 14:01:46,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:02:19] 2025-10-12 14:01:46,590 | INFO     | aborting loop
[2025-10-12 10:02:19] 2025-10-12 14:01:46,937 | INFO     | all job control threads have been joined
[2025-10-12 10:02:19] 2025-10-12 14:01:46,990 | INFO     | all payload control threads have been joined
[2025-10-12 10:02:19] 2025-10-12 14:01:47,261 | INFO     | all data control threads have been joined
[2025-10-12 10:02:19] 2025-10-12 14:01:47,595 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:47,596 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:47,662 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:02:19] 2025-10-12 14:01:47,680 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:47,834 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:47,834 | INFO     | [job] validate thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:47,943 | INFO     | [job] control thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:48,003 | INFO     | [payload] control thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:48,183 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:48,267 | INFO     | [data] control thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:48,340 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:48,437 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:48,438 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:49,014 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:49,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:02:19] 2025-10-12 14:01:49,670 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:49,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:02:19] 2025-10-12 14:01:50,347 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:53,784 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:02:19] 2025-10-12 14:01:56,558 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:02:19] 2025-10-12 14:01:58,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140291004229440)>', '<ExcThread(monitor, started 140290501355264)>']
[2025-10-12 10:02:19] 2025-10-12 14:02:03,375 | INFO     | all workflow threads have been joined
[2025-10-12 10:02:19] 2025-10-12 14:02:03,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:02:19] 2025-10-12 14:02:03,377 | INFO     | traces error code: 0
[2025-10-12 10:02:19] 2025-10-12 14:02:03,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | INFO     | PID=1857555 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | INFO     | .. there are 31 such processes running
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 10:02:19] 2025-10-12 14:02:18,372 | INFO     | [monitor] control thread has ended
[2025-10-12 10:02:19] 2025-10-12 14:02:18,491 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:02:19] 2025-10-12 14:02:18,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:02:19] 2025-10-12 14:02:18,495 [wrapper] pilotpid: 1857555
[2025-10-12 10:02:19] 2025-10-12 14:02:18,497 [wrapper] Pilot exit status: 0
[2025-10-12 10:02:19] 2025-10-12 14:02:18,675 [wrapper] pandaids: 6839387219
[2025-10-12 10:02:19] 2025-10-12 14:02:19,192 [wrapper] cleanup supervisor_pilot 2170442 1857556
[2025-10-12 10:02:19] 2025-10-12 14:02:19,212 [wrapper] Test setup, not cleaning
[2025-10-12 10:02:19] 2025-10-12 14:02:19,231 [wrapper] apfmon messages muted
[2025-10-12 10:02:19] 2025-10-12 14:02:19,273 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:02:19] 2025-10-12 14:02:19,300 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:02:19]  *** Error codes and diagnostics ***
[2025-10-12 10:02:19]     "exeErrorCode": 0,
[2025-10-12 10:02:19]     "exeErrorDiag": "",
[2025-10-12 10:02:19]     "pilotErrorCode": 0,
[2025-10-12 10:02:19]     "pilotErrorDiag": "",
[2025-10-12 10:02:19]  *** Listing of results directory ***
[2025-10-12 10:02:19] total 418752
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 00:11 pilot3.tar.gz
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 00:14 queuedata.json
[2025-10-12 10:02:19] -rwx------. 1 boincer umatlas     36292 Oct 12 00:15 runpilot2-wrapper.sh
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas       100 Oct 12 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:02:19] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 08:36 run_atlas
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas       105 Oct 12 08:36 job.xml
[2025-10-12 10:02:19] -rw-r--r--. 2 boincer umatlas 222771916 Oct 12 08:36 EVNT.46676267._003292.pool.root.1
[2025-10-12 10:02:19] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 08:36 shared
[2025-10-12 10:02:19] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 08:36 input.tar.gz
[2025-10-12 10:02:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:36 start_atlas.sh
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas         0 Oct 12 08:36 boinc_lockfile
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 08:36 pandaJob.out
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas    975512 Oct 12 08:37 agis_schedconf.cvmfs.json
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas   1560580 Oct 12 08:37 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:02:19] drwx------. 5 boincer umatlas      4096 Oct 12 08:37 pilot3
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas 200055036 Oct 12 10:00 HITS.46676269._071150.pool.root.1
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas       530 Oct 12 10:00 boinc_task_state.xml
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas      1046 Oct 12 10:01 memory_monitor_summary.json
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas        95 Oct 12 10:01 pilot_heartbeat.json
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas    345541 Oct 12 10:01 log.46676269._071150.job.log.tgz.1
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas      7807 Oct 12 10:01 heartbeat.json
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 10:01 init_data.xml
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas       893 Oct 12 10:02 pilotlog.txt
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 10:02 boinc_mmap_file
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas        27 Oct 12 10:02 wrapper_checkpoint.txt
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas    692148 Oct 12 10:02 log.46676269._071150.job.log.1
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas       357 Oct 12 10:02 output.list
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas       620 Oct 12 10:02 runtime_log
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas   1054720 Oct 12 10:02 result.tar.gz
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 10:02 runtime_log.err
[2025-10-12 10:02:19] -rw-------. 1 boincer umatlas       656 Oct 12 10:02 edsNDmUf2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgciNDm3b48Om.diag
[2025-10-12 10:02:19] -rw-r--r--. 1 boincer umatlas     22260 Oct 12 10:02 stderr.txt
[2025-10-12 10:02:20] HITS file was successfully produced:
[2025-10-12 10:02:20] -rw-------. 1 boincer umatlas 200055036 Oct 12 10:00 shared/HITS.pool.root.1
[2025-10-12 10:02:20]  *** Contents of shared directory: ***
[2025-10-12 10:02:20] total 414536
[2025-10-12 10:02:20] -rw-r--r--. 2 boincer umatlas 222771916 Oct 12 08:36 ATLAS.root_0
[2025-10-12 10:02:20] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 08:36 input.tar.gz
[2025-10-12 10:02:20] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:36 start_atlas.sh
[2025-10-12 10:02:20] -rw-------. 1 boincer umatlas 200055036 Oct 12 10:00 HITS.pool.root.1
[2025-10-12 10:02:20] -rw-------. 1 boincer umatlas   1054720 Oct 12 10:02 result.tar.gz
10:02:21 (1850897): run_atlas exited; CPU time 24997.886847
10:02:21 (1850897): called boinc_finish(0)

</stderr_txt>
]]>

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