Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:06:06 (3806459): wrapper (7.7.26015): starting
00:06:06 (3806459): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 00:06:06] Arguments: --nthreads 4
[2025-10-13 00:06:06] Threads: 4
[2025-10-13 00:06:06] Checking for CVMFS
[2025-10-13 00:06:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:06:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:06:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:06:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:06:06] 2.9.2.0 2032506 4884 104316 151639 4 1 26380481 36864001 0 130560 0 4387878 99.992 166713 987 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 00:06:06] CVMFS is ok
[2025-10-13 00:06:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:06:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:06:06] Further information can be found at the LHC@home message board.
[2025-10-13 00:06:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:06:06] Checking for apptainer binary...
[2025-10-13 00:06:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:06:06] Running /usr/bin/apptainer --version
[2025-10-13 00:06:06] apptainer version 1.4.1-1.1
[2025-10-13 00:06:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:06:06] madmaxA277
[2025-10-13 00:06:06] apptainer works
[2025-10-13 00:06:06] Set ATHENA_PROC_NUMBER=4
[2025-10-13 00:06:06] Set ATHENA_CORE_NUMBER=4
[2025-10-13 00:06:06] Starting ATLAS job with PandaID=6838989156
[2025-10-13 00:06:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:17:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:17:32] 2025-10-12 23:17:02,144 | INFO     | did not find any defunct processes belonging to 3816841
[2025-10-13 01:17:32] 2025-10-12 23:17:02,146 | INFO     | did not find any defunct processes belonging to 3816841
[2025-10-13 01:17:32] 2025-10-12 23:17:02,146 | INFO     | ready for new job
[2025-10-13 01:17:32] 2025-10-12 23:17:02,146 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:17:32] 2025-10-12 23:17:02,146 | INFO     | ***************************************
[2025-10-13 01:17:32] 2025-10-12 23:17:02,147 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:17:32] 2025-10-12 23:17:02,147 | INFO     | ***************************************
[2025-10-13 01:17:32] 2025-10-12 23:17:02,147 | INFO     | 
[2025-10-13 01:17:32] 2025-10-12 23:17:02,147 | INFO     | architecture information:
[2025-10-13 01:17:32] 2025-10-12 23:17:02,147 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:17:32] 2025-10-12 23:17:02,161 | INFO     | cat /etc/os-release:
[2025-10-13 01:17:32] NAME="CentOS Linux"
[2025-10-13 01:17:32] VERSION="7 (Core)"
[2025-10-13 01:17:32] ID="centos"
[2025-10-13 01:17:32] ID_LIKE="rhel fedora"
[2025-10-13 01:17:32] VERSION_ID="7"
[2025-10-13 01:17:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:17:32] ANSI_COLOR="0;31"
[2025-10-13 01:17:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:17:32] HOME_URL="https://www.centos.org/"
[2025-10-13 01:17:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:17:32] 
[2025-10-13 01:17:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:17:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:17:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:17:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:17:32] 
[2025-10-13 01:17:32] 2025-10-12 23:17:02,161 | INFO     | ***************************************
[2025-10-13 01:17:32] 2025-10-12 23:17:02,664 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 01:17:32] 2025-10-12 23:17:02,678 | INFO     | sufficient remaining disk space (333289881600 B)
[2025-10-13 01:17:32] 2025-10-12 23:17:02,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:17:32] 2025-10-12 23:17:02,679 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:17:32] 2025-10-12 23:17:02,679 | INFO     | update_server=False
[2025-10-13 01:17:32] 2025-10-12 23:17:02,679 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:17:32] 2025-10-12 23:17:02,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:17:32] 2025-10-12 23:17:02,761 | INFO     | all data control threads have been joined
[2025-10-13 01:17:32] 2025-10-12 23:17:02,868 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 01:17:32] 2025-10-12 23:17:02,869 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 01:17:32] 2025-10-12 23:17:02,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:17:32] 2025-10-12 23:17:02,869 | INFO     | will abort loop
[2025-10-13 01:17:32] 2025-10-12 23:17:03,139 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:17:32] 2025-10-12 23:17:03,156 | INFO     | all payload control threads have been joined
[2025-10-13 01:17:32] 2025-10-12 23:17:03,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:17:32] 2025-10-12 23:17:03,684 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:03,684 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:03,743 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:03,766 | INFO     | [data] control thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:03,874 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:03,930 | INFO     | all job control threads have been joined
[2025-10-13 01:17:32] 2025-10-12 23:17:04,162 | INFO     | [payload] control thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:04,332 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:04,465 | INFO     | [job] validate thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:04,496 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:04,543 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:04,623 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:04,699 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:04,935 | INFO     | [job] control thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:05,145 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:07,672 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:12,901 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:17:32] 2025-10-12 23:17:13,906 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:17:32] 2025-10-12 23:17:19,000 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:17:32] 2025-10-12 23:17:20,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361252726592)>', '<ExcThread(monitor, started 140360378468096)>']
[2025-10-13 01:17:32] 2025-10-12 23:17:25,811 | INFO     | all workflow threads have been joined
[2025-10-13 01:17:32] 2025-10-12 23:17:25,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:17:32] 2025-10-12 23:17:25,812 | INFO     | traces error code: 0
[2025-10-13 01:17:32] 2025-10-12 23:17:25,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:17:32] 2025-10-12 23:17:32,574 | INFO     | PID=3810244 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:17:32] 2025-10-12 23:17:32,574 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:17:32] 2025-10-12 23:17:32,574 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:17:32] 2025-10-12 23:17:32,574 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:17:32] 2025-10-12 23:17:32,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:17:32] 2025-10-12 23:17:32,574 | INFO     | [monitor] control thread has ended
[2025-10-13 01:17:32] 2025-10-12 23:17:32,651 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:17:32] 2025-10-12 23:17:32,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:17:32] 2025-10-12 23:17:32,658 [wrapper] pilotpid: 3810244
[2025-10-13 01:17:32] 2025-10-12 23:17:32,663 [wrapper] Pilot exit status: 0
[2025-10-13 01:17:32] 2025-10-12 23:17:32,674 [wrapper] pandaids: 6838989156
[2025-10-13 01:17:32] 2025-10-12 23:17:32,696 [wrapper] cleanup supervisor_pilot 3827948 3810245
[2025-10-13 01:17:32] 2025-10-12 23:17:32,699 [wrapper] Test setup, not cleaning
[2025-10-13 01:17:32] 2025-10-12 23:17:32,703 [wrapper] apfmon messages muted
[2025-10-13 01:17:32] 2025-10-12 23:17:32,707 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:17:32] 2025-10-12 23:17:32,711 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:17:32]  *** Error codes and diagnostics ***
[2025-10-13 01:17:32]     "exeErrorCode": 0,
[2025-10-13 01:17:32]     "exeErrorDiag": "",
[2025-10-13 01:17:32]     "pilotErrorCode": 0,
[2025-10-13 01:17:32]     "pilotErrorDiag": "",
[2025-10-13 01:17:32]  *** Listing of results directory ***
[2025-10-13 01:17:32] total 412000
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc    557409 Oct 11 23:39 pilot3.tar.gz
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc      5112 Oct 11 23:52 queuedata.json
[2025-10-13 01:17:32] -rwx------ 1 boinc boinc     36292 Oct 11 23:52 runpilot2-wrapper.sh
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc       100 Oct 13 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:17:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 00:06 run_atlas
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc       105 Oct 13 00:06 job.xml
[2025-10-13 01:17:32] -rw-r--r-- 2 boinc boinc 221218557 Oct 13 00:06 EVNT.46676267._002630.pool.root.1
[2025-10-13 01:17:32] -rw-r--r-- 2 boinc boinc    569678 Oct 13 00:06 input.tar.gz
[2025-10-13 01:17:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:06 start_atlas.sh
[2025-10-13 01:17:32] drwxrwx--x 2 boinc boinc      4096 Oct 13 00:06 shared
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:06 boinc_setup_complete
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc      6373 Oct 13 00:06 init_data.xml
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:06 boinc_lockfile
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc      2550 Oct 13 00:06 pandaJob.out
[2025-10-13 01:17:32] -rw------- 1 boinc boinc    975528 Oct 13 00:06 agis_schedconf.cvmfs.json
[2025-10-13 01:17:32] -rw------- 1 boinc boinc   1560580 Oct 13 00:06 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:17:32] drwx------ 5 boinc boinc      4096 Oct 13 00:06 pilot3
[2025-10-13 01:17:32] -rw------- 1 boinc boinc 194990607 Oct 13 01:16 HITS.46676269._065471.pool.root.1
[2025-10-13 01:17:32] -rw------- 1 boinc boinc        95 Oct 13 01:16 pilot_heartbeat.json
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc       530 Oct 13 01:16 boinc_task_state.xml
[2025-10-13 01:17:32] -rw------- 1 boinc boinc      1022 Oct 13 01:16 memory_monitor_summary.json
[2025-10-13 01:17:32] -rw------- 1 boinc boinc    259862 Oct 13 01:16 log.46676269._065471.job.log.tgz.1
[2025-10-13 01:17:32] -rw------- 1 boinc boinc      7765 Oct 13 01:17 heartbeat.json
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:17 wrapper_checkpoint.txt
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:17 boinc_mmap_file
[2025-10-13 01:17:32] -rw------- 1 boinc boinc       747 Oct 13 01:17 pilotlog.txt
[2025-10-13 01:17:32] -rw------- 1 boinc boinc    631131 Oct 13 01:17 log.46676269._065471.job.log.1
[2025-10-13 01:17:32] -rw------- 1 boinc boinc       357 Oct 13 01:17 output.list
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:17 runtime_log
[2025-10-13 01:17:32] -rw------- 1 boinc boinc    911360 Oct 13 01:17 result.tar.gz
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc      8797 Oct 13 01:17 runtime_log.err
[2025-10-13 01:17:32] -rw------- 1 boinc boinc       662 Oct 13 01:17 ikKNDmvgwR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm4dSMDmrBAXWn.diag
[2025-10-13 01:17:32] -rw-r--r-- 1 boinc boinc     10083 Oct 13 01:17 stderr.txt
[2025-10-13 01:17:32] HITS file was successfully produced:
[2025-10-13 01:17:32] -rw------- 1 boinc boinc 194990607 Oct 13 01:16 shared/HITS.pool.root.1
[2025-10-13 01:17:32]  *** Contents of shared directory: ***
[2025-10-13 01:17:32] total 407936
[2025-10-13 01:17:32] -rw-r--r-- 2 boinc boinc 221218557 Oct 13 00:06 ATLAS.root_0
[2025-10-13 01:17:32] -rw-r--r-- 2 boinc boinc    569678 Oct 13 00:06 input.tar.gz
[2025-10-13 01:17:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:06 start_atlas.sh
[2025-10-13 01:17:32] -rw------- 1 boinc boinc 194990607 Oct 13 01:16 HITS.pool.root.1
[2025-10-13 01:17:32] -rw------- 1 boinc boinc    911360 Oct 13 01:17 result.tar.gz
01:17:34 (3806459): run_atlas exited; CPU time 16031.575311
01:17:34 (3806459): called boinc_finish(0)

</stderr_txt>
]]>

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