Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:21:37 (26959): wrapper (7.7.26015): starting
18:21:37 (26959): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:21:37] Arguments: --nthreads 8
[2025-10-12 18:21:37] Threads: 8
[2025-10-12 18:21:37] Checking for CVMFS
[2025-10-12 18:21:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:21:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:21:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:21:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:21:40] 2.11.2.0 6116 220823 138780 151625 0 60 18656026 25165824 4632 130560 0 121258608 99.895 62277677 4048 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 18:21:40] CVMFS is ok
[2025-10-12 18:21:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:21:40] Checking for apptainer binary...
[2025-10-12 18:21:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:21:40] Running /usr/bin/apptainer --version
[2025-10-12 18:21:40] apptainer version 1.3.2-1.el7
[2025-10-12 18:21:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:21:55] cg-vwn314.simple-grid.lan
[2025-10-12 18:21:55] apptainer works
[2025-10-12 18:21:55] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:21:55] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:21:56] Starting ATLAS job with PandaID=6838230426
[2025-10-12 18:21:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:44:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | current memory leak: -8.98 B/s (using 148 data points, chi2=0.11)
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | ..............................
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . Timing measurements:
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . get job = 0 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . initial setup = 4 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . payload setup = 135 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . stage-in = 0 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . payload execution = 11387 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . stage-out = 3 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . log creation = 1 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | ..............................
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 21:44:53] 2025-10-12 19:43:52,129 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/4/PanDA_Pilot-6838230426/pilotlog.txt
[2025-10-12 21:44:53] 2025-10-12 19:43:52,407 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 21:44:53] - Log from pilotlog.txt -
[2025-10-12 21:44:53] 2025-10-12 19:43:52,117 | INFO     | mean x: 1760293116.5
[2025-10-12 21:44:53] 2025-10-12 19:43:52,125 | INFO     | mean y: 2522681.8445945946
[2025-10-12 21:44:53] 2025-10-12 19:43:52,125 | INFO     | -- intersect: 15804292914.613155
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | intersect: 15804292914.613155
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | chi2: 0.1105513822715585
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | -- intersect: 15804292914.613155
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | current memory leak: -8.98 B/s (using 148 data points, chi2=0.11)
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | ..............................
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . Timing measurements:
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . get job = 0 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . initial setup = 4 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . payload setup = 135 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . stage-in = 0 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . payload execution = 11387 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . stage-out = 3 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . log creation = 1 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | ..............................
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 21:44:53] 2025-10-12 19:43:52,129 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/4/PanDA_Pilot-6838230426/pilotlog.txt
[2025-10-12 21:44:53] 2025-10-12 19:43:52,407 | WARNING  | 
[2025-10-12 21:44:53] [begin log extracts]
[2025-10-12 21:44:53] - Log from pilotlog.txt -
[2025-10-12 21:44:53] 2025-10-12 19:43:52,117 | INFO     | mean x: 1760293116.5
[2025-10-12 21:44:53] 2025-10-12 19:43:52,125 | INFO     | mean y: 2522681.8445945946
[2025-10-12 21:44:53] 2025-10-12 19:43:52,125 | INFO     | -- intersect: 15804292914.613155
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | intersect: 15804292914.613155
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | chi2: 0.1105513822715585
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | -- intersect: 15804292914.613155
[2025-10-12 21:44:53] 2025-10-12 19:43:52,126 | INFO     | current memory leak: -8.98 B/s (using 148 data points, chi2=0.11)
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | ..............................
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . Timing measurements:
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . get job = 0 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,127 | INFO     | . initial setup = 4 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . payload setup = 135 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . stage-in = 0 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . payload execution = 11387 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . stage-out = 3 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | . log creation = 1 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | ..............................
[2025-10-12 21:44:53] 2025-10-12 19:43:52,128 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 21:44:53] 2025-10-12 19:43:52,129 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/4/PanDA_Pilot-6838230426/pilotlog.txt
[2025-10-12 21:44:53] [end log extracts]
[2025-10-12 21:44:53] 2025-10-12 19:43:52,407 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 21:44:53] 2025-10-12 19:43:52,408 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-12 21:44:53] 2025-10-12 19:43:52,708 | INFO     | 
[2025-10-12 21:44:53] 2025-10-12 19:43:52,708 | INFO     | job summary report
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | --------------------------------------------------
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | PanDA job id: 6838230426
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | task id: 46676269
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 19:39:52,492 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | pilot state: failed 
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | transexitcode: 65
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | exeerrorcode: 65
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                               283     2   FA
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | exitcode: 65
[2025-10-12 21:44:53] 2025-10-12 19:43:52,709 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                               283     2   FATAL  
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | cpuconsumptiontime: 39798 s
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | nevents: 0
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | neventsw: 0
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | pid: 4881
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | pgrp: 4881
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | corecount: 8
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | event service: False
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 33: 2348941, 44: 2348997, 55: 2349153, 66: 2349181, 76: 2349209, 81: 2349527, 87: 2349555, 11527: 2384678
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | --------------------------------------------------
[2025-10-12 21:44:53] 2025-10-12 19:43:52,710 | INFO     | 
[2025-10-12 21:44:53] 2025-10-12 19:43:52,711 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-12 21:44:53] 2025-10-12 19:43:52,831 | INFO     | PID=30745 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:44:53] 2025-10-12 19:43:52,832 | INFO     | .. there are 9 such processes running
[2025-10-12 21:44:53] 2025-10-12 19:43:53,343 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,343 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,343 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,345 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,345 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,345 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:44:53] 2025-10-12 19:43:53,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,345 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:44:53] 2025-10-12 19:43:53,345 | INFO     | job 6838230426 has completed (purged errors)
[2025-10-12 21:44:53] 2025-10-12 19:43:53,345 | INFO     | overall cleanup function is called
[2025-10-12 21:44:53] 2025-10-12 19:43:54,354 | INFO     | --- collectZombieJob: --- 10, [4881]
[2025-10-12 21:44:53] 2025-10-12 19:43:54,354 | INFO     | zombie collector waiting for pid 4881
[2025-10-12 21:44:53] 2025-10-12 19:43:54,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:44:53] 2025-10-12 19:43:54,355 | INFO     | collected zombie processes
[2025-10-12 21:44:53] 2025-10-12 19:43:54,355 | INFO     | will attempt to kill all subprocesses of pid=4881
[2025-10-12 21:44:53] 2025-10-12 19:43:54,507 | INFO     | process IDs to be killed: [4881] (in reverse order)
[2025-10-12 21:44:53] 2025-10-12 19:43:55,011 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:44:53] 2025-10-12 19:43:55,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:44:53] 2025-10-12 19:43:55,015 | INFO     | did not find any defunct processes belonging to 4881
[2025-10-12 21:44:53] 2025-10-12 19:43:55,018 | INFO     | did not find any defunct processes belonging to 4881
[2025-10-12 21:44:53] 2025-10-12 19:43:55,018 | INFO     | ready for new job
[2025-10-12 21:44:53] 2025-10-12 19:43:55,018 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:44:53] 2025-10-12 19:43:55,024 | INFO     | ***************************************
[2025-10-12 21:44:53] 2025-10-12 19:43:55,024 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:44:53] 2025-10-12 19:43:55,025 | INFO     | ***************************************
[2025-10-12 21:44:53] 2025-10-12 19:43:55,025 | INFO     | 
[2025-10-12 21:44:53] 2025-10-12 19:43:55,025 | INFO     | pilot is running in a VM
[2025-10-12 21:44:53] 2025-10-12 19:43:55,025 | INFO     | architecture information:
[2025-10-12 21:44:53] 2025-10-12 19:43:55,036 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:44:53] 2025-10-12 19:43:55,203 | INFO     | cat /etc/os-release:
[2025-10-12 21:44:53] NAME="CentOS Linux"
[2025-10-12 21:44:53] VERSION="7 (Core)"
[2025-10-12 21:44:53] ID="centos"
[2025-10-12 21:44:53] ID_LIKE="rhel fedora"
[2025-10-12 21:44:53] VERSION_ID="7"
[2025-10-12 21:44:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:44:53] ANSI_COLOR="0;31"
[2025-10-12 21:44:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:44:53] HOME_URL="https://www.centos.org/"
[2025-10-12 21:44:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:44:53] 
[2025-10-12 21:44:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:44:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:44:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:44:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:44:53] 
[2025-10-12 21:44:53] 2025-10-12 19:43:55,204 | INFO     | ***************************************
[2025-10-12 21:44:53] 2025-10-12 19:43:55,707 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-12 21:44:53] 2025-10-12 19:43:56,382 | INFO     | sufficient remaining disk space (496415801344 B)
[2025-10-12 21:44:53] 2025-10-12 19:43:56,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:44:53] 2025-10-12 19:43:56,383 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:44:53] 2025-10-12 19:43:56,383 | INFO     | update_server=False
[2025-10-12 21:44:53] 2025-10-12 19:43:56,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:44:53] 2025-10-12 19:43:56,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:44:53] 2025-10-12 19:43:56,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:44:53] 2025-10-12 19:43:56,681 | INFO     | all data control threads have been joined
[2025-10-12 21:44:53] 2025-10-12 19:43:56,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:44:53] 2025-10-12 19:43:56,739 | INFO     | aborting loop
[2025-10-12 21:44:53] 2025-10-12 19:43:56,940 | INFO     | all payload control threads have been joined
[2025-10-12 21:44:53] 2025-10-12 19:43:57,389 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:57,633 | INFO     | all job control threads have been joined
[2025-10-12 21:44:53] 2025-10-12 19:43:57,660 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:57,687 | INFO     | [data] control thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:57,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:44:53] 2025-10-12 19:43:57,745 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:57,873 | INFO     | [job] validate thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:57,920 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:57,923 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:57,946 | INFO     | [payload] control thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:58,034 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:58,236 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:58,392 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:58,526 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:58,619 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:58,639 | INFO     | [job] control thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:43:58,727 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:44:00,488 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:44:53] 2025-10-12 19:44:25,017 | INFO     | PID=30745 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:44:53] 2025-10-12 19:44:25,017 | INFO     | .. there are 9 such processes running
[2025-10-12 21:44:53] 2025-10-12 19:44:25,017 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:44:53] 2025-10-12 19:44:25,017 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:44:53] 2025-10-12 19:44:25,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:44:53] 2025-10-12 19:44:41,941 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:44:53] 2025-10-12 19:44:42,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140291938731840)>', '<ExcThread(monitor, started 140291214407424)>']
[2025-10-12 21:44:53] 2025-10-12 19:44:43,124 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:44:53] 2025-10-12 19:44:43,124 | INFO     | [monitor] control thread has ended
[2025-10-12 21:44:53] 2025-10-12 19:44:47,984 | INFO     | all workflow threads have been joined
[2025-10-12 21:44:53] 2025-10-12 19:44:47,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:44:53] 2025-10-12 19:44:47,985 | INFO     | traces error code: 0
[2025-10-12 21:44:53] 2025-10-12 19:44:47,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:44:53] 2025-10-12 19:44:48,354 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:44:53] 2025-10-12 19:44:48,469 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:44:53] 2025-10-12 19:44:48,554 [wrapper] pilotpid: 30745
[2025-10-12 21:44:53] 2025-10-12 19:44:48,650 [wrapper] Pilot exit status: 0
[2025-10-12 21:44:53] 2025-10-12 19:44:49,208 [wrapper] pandaids: 6838230426
[2025-10-12 21:44:53] 2025-10-12 19:44:50,454 [wrapper] cleanup supervisor_pilot 27472 30746
[2025-10-12 21:44:53] 2025-10-12 19:44:50,549 [wrapper] Test setup, not cleaning
[2025-10-12 21:44:53] 2025-10-12 19:44:50,673 [wrapper] apfmon messages muted
[2025-10-12 21:44:53] 2025-10-12 19:44:50,771 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:44:53] 2025-10-12 19:44:50,820 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:44:53]  *** Error codes and diagnostics ***
[2025-10-12 21:44:53]     "exeErrorCode": 65,
[2025-10-12 21:44:53]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                               283     2   FATAL  Standard std::exception is caught\"",
[2025-10-12 21:44:53]     "pilotErrorCode": 1305,
[2025-10-12 21:44:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                               283     2   FATAL  Stand",
[2025-10-12 21:44:53]  *** Listing of results directory ***
[2025-10-12 21:44:53] total 224528
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc    557409 Oct 11 10:32 pilot3.tar.gz
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc      5112 Oct 11 10:38 queuedata.json
[2025-10-12 21:44:53] -rwx------. 1 boinc boinc     36292 Oct 11 10:38 runpilot2-wrapper.sh
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc       100 Oct 12 18:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:44:53] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 18:21 run_atlas
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc       105 Oct 12 18:21 job.xml
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc      6389 Oct 12 18:21 init_data.xml
[2025-10-12 21:44:53] -rw-r--r--. 2 boinc boinc 221970536 Oct 12 18:21 EVNT.46676267._002181.pool.root.1
[2025-10-12 21:44:53] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:21 start_atlas.sh
[2025-10-12 21:44:53] drwxrwx--x. 2 boinc boinc        68 Oct 12 18:21 shared
[2025-10-12 21:44:53] -rw-r--r--. 2 boinc boinc    569679 Oct 12 18:21 input.tar.gz
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc         0 Oct 12 18:21 boinc_lockfile
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc      2550 Oct 12 18:21 pandaJob.out
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc    975528 Oct 12 18:25 agis_schedconf.cvmfs.json
[2025-10-12 21:44:53] drwx------. 5 boinc boinc      4096 Oct 12 18:25 pilot3
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc       531 Oct 12 21:37 boinc_task_state.xml
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc      1020 Oct 12 21:40 memory_monitor_summary.json
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc    420435 Oct 12 21:40 log.46676269._054374.job.log.tgz.1
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc   1560580 Oct 12 21:40 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc        95 Oct 12 21:43 pilot_heartbeat.json
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc     11872 Oct 12 21:43 heartbeat.json
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc      8192 Oct 12 21:44 boinc_mmap_file
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc        28 Oct 12 21:44 wrapper_checkpoint.txt
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc      4884 Oct 12 21:44 pilotlog.txt
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc   1602661 Oct 12 21:44 log.46676269._054374.job.log.1
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc       188 Oct 12 21:44 output.list
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc       620 Oct 12 21:44 runtime_log
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc   2048000 Oct 12 21:44 result.tar.gz
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc      8551 Oct 12 21:44 runtime_log.err
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc       656 Oct 12 21:44 mlMLDmCIkR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbsfNDmp3ErIm.diag
[2025-10-12 21:44:53] -rw-r--r--. 1 boinc boinc     21790 Oct 12 21:44 stderr.txt
[2025-10-12 21:44:53] No HITS result produced
[2025-10-12 21:44:53]  *** Contents of shared directory: ***
[2025-10-12 21:44:53] total 219348
[2025-10-12 21:44:53] -rw-r--r--. 2 boinc boinc 221970536 Oct 12 18:21 ATLAS.root_0
[2025-10-12 21:44:53] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:21 start_atlas.sh
[2025-10-12 21:44:53] -rw-r--r--. 2 boinc boinc    569679 Oct 12 18:21 input.tar.gz
[2025-10-12 21:44:53] -rw-------. 1 boinc boinc   2048000 Oct 12 21:44 result.tar.gz
21:44:54 (26959): run_atlas exited; CPU time 39963.726643
21:44:54 (26959): called boinc_finish(0)

</stderr_txt>
]]>

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