Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:02:15 (26176): wrapper (7.7.26015): starting
08:02:15 (26176): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 08:02:15] Arguments: --nthreads 8
[2025-10-12 08:02:15] Threads: 8
[2025-10-12 08:02:15] Checking for CVMFS
[2025-10-12 08:02:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:02:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:02:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:02:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:02:16] 2.11.2.0 2934 111998 84564 151619 2 57 14587954 20275201 1 130560 1 50185060 99.986 3856492 21295 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:02:16] CVMFS is ok
[2025-10-12 08:02:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:02:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:02:16] Further information can be found at the LHC@home message board.
[2025-10-12 08:02:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:02:16] Checking for apptainer binary...
[2025-10-12 08:02:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:02:16] Running /usr/bin/apptainer --version
[2025-10-12 08:02:16] apptainer version 1.3.2-1.el7
[2025-10-12 08:02:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:02:17] c-204-33.aglt2.org
[2025-10-12 08:02:17] apptainer works
[2025-10-12 08:02:17] Set ATHENA_PROC_NUMBER=8
[2025-10-12 08:02:17] Set ATHENA_CORE_NUMBER=8
[2025-10-12 08:02:17] Starting ATLAS job with PandaID=6839866141
[2025-10-12 08:02:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:12:52]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:12:52] 2025-10-12 14:11:48,542 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:12:52] 2025-10-12 14:11:48,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:12:52] 2025-10-12 14:11:48,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:12:52] 2025-10-12 14:11:48,547 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:12:52] 2025-10-12 14:11:48,547 | INFO     | sum of square deviations: 635130048.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,548 | INFO     | sum of deviations: 5609851274.999999
[2025-10-12 10:12:52] 2025-10-12 14:11:48,548 | INFO     | mean x: 1760274428.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,548 | INFO     | mean y: 2466572.196850394
[2025-10-12 10:12:52] 2025-10-12 14:11:48,548 | INFO     | -- intersect: -15545337811.11221
[2025-10-12 10:12:52] 2025-10-12 14:11:48,549 | INFO     | intersect: -15545337811.11221
[2025-10-12 10:12:52] 2025-10-12 14:11:48,549 | INFO     | chi2: 2.2527668734536257
[2025-10-12 10:12:52] 2025-10-12 14:11:48,549 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 10:12:52] 2025-10-12 14:11:48,550 | INFO     | sum of deviations: 13603365634.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,550 | INFO     | mean x: 1760274275.5
[2025-10-12 10:12:52] 2025-10-12 14:11:48,550 | INFO     | mean y: 2482912.0327868853
[2025-10-12 10:12:52] 2025-10-12 14:11:48,551 | INFO     | -- intersect: -42527771158.45741
[2025-10-12 10:12:52] 2025-10-12 14:11:48,551 | INFO     | intersect: -42527771158.45741
[2025-10-12 10:12:52] 2025-10-12 14:11:48,551 | INFO     | chi2: 1.4836190215596532
[2025-10-12 10:12:52] 2025-10-12 14:11:48,551 | INFO     | current chi2=1.4836190215596532 (change=34.14236337357106 %)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,552 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,552 | INFO     | sum of deviations: 13017600446.000004
[2025-10-12 10:12:52] 2025-10-12 14:11:48,553 | INFO     | mean x: 1760274123.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,553 | INFO     | mean y: 2481565.7264957265
[2025-10-12 10:12:52] 2025-10-12 14:11:48,553 | INFO     | -- intersect: -46140638810.447395
[2025-10-12 10:12:52] 2025-10-12 14:11:48,553 | INFO     | intersect: -46140638810.447395
[2025-10-12 10:12:52] 2025-10-12 14:11:48,553 | INFO     | chi2: 1.486272080808853
[2025-10-12 10:12:52] 2025-10-12 14:11:48,554 | INFO     | current chi2=1.486272080808853 (change=-0.17882348572282114 %)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,554 | INFO     | right removable region: 116
[2025-10-12 10:12:52] 2025-10-12 14:11:48,554 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 10:12:52] 2025-10-12 14:11:48,555 | INFO     | sum of deviations: -12385031391.5
[2025-10-12 10:12:52] 2025-10-12 14:11:48,555 | INFO     | mean x: 1760274580.5
[2025-10-12 10:12:52] 2025-10-12 14:11:48,555 | INFO     | mean y: 2503892.926229508
[2025-10-12 10:12:52] 2025-10-12 14:11:48,555 | INFO     | -- intersect: 38723702542.62961
[2025-10-12 10:12:52] 2025-10-12 14:11:48,555 | INFO     | intersect: 38723702542.62961
[2025-10-12 10:12:52] 2025-10-12 14:11:48,556 | INFO     | chi2: 0.868797506728835
[2025-10-12 10:12:52] 2025-10-12 14:11:48,556 | INFO     | current chi2=0.868797506728835 (change=61.43420267020719 %)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,556 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,556 | INFO     | sum of deviations: -9381929198.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,557 | INFO     | mean x: 1760274733.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,557 | INFO     | mean y: 2496896.1965811965
[2025-10-12 10:12:52] 2025-10-12 14:11:48,557 | INFO     | -- intersect: 33258367681.26883
[2025-10-12 10:12:52] 2025-10-12 14:11:48,557 | INFO     | intersect: 33258367681.26883
[2025-10-12 10:12:52] 2025-10-12 14:11:48,557 | INFO     | chi2: 0.846030360752658
[2025-10-12 10:12:52] 2025-10-12 14:11:48,557 | INFO     | current chi2=0.846030360752658 (change=2.6205353721489204 %)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,557 | INFO     | left removable region: 20
[2025-10-12 10:12:52] 2025-10-12 14:11:48,558 | INFO     | sum of square deviations: 274312120.0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,558 | INFO     | sum of deviations: 1257837141.0000002
[2025-10-12 10:12:52] 2025-10-12 14:11:48,558 | INFO     | mean x: 1760274702.5
[2025-10-12 10:12:52] 2025-10-12 14:11:48,558 | INFO     | mean y: 2508156.7708333335
[2025-10-12 10:12:52] 2025-10-12 14:11:48,558 | INFO     | -- intersect: -8069096186.366561
[2025-10-12 10:12:52] 2025-10-12 14:11:48,559 | INFO     | intersect: -8069096186.366561
[2025-10-12 10:12:52] 2025-10-12 14:11:48,559 | INFO     | chi2: 0.0005503474169491075
[2025-10-12 10:12:52] 2025-10-12 14:11:48,559 | INFO     | -- intersect: -8069096186.366561
[2025-10-12 10:12:52] 2025-10-12 14:11:48,559 | INFO     | current memory leak: 4.59 B/s (using 96 data points, chi2=0.00)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,559 | INFO     | could have reported an average CPU frequency of 1983 MHz (8 samples)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | ..............................
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | . Timing measurements:
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | . get job = 0 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | . initial setup = 2 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | . payload setup = 8 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | . stage-in = 0 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | . payload execution = 7713 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,560 | INFO     | . stage-out = 0 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,561 | INFO     | . log creation = 0 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,561 | INFO     | ..............................
[2025-10-12 10:12:52] 2025-10-12 14:11:48,652 | INFO     | 
[2025-10-12 10:12:52] 2025-10-12 14:11:48,652 | INFO     | job summary report
[2025-10-12 10:12:52] 2025-10-12 14:11:48,652 | INFO     | --------------------------------------------------
[2025-10-12 10:12:52] 2025-10-12 14:11:48,653 | INFO     | PanDA job id: 6839866141
[2025-10-12 10:12:52] 2025-10-12 14:11:48,653 | INFO     | task id: 46676269
[2025-10-12 10:12:52] 2025-10-12 14:11:48,653 | INFO     | errors: (none)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:12:52] 2025-10-12 14:11:48,653 | INFO     | pilot state: finished 
[2025-10-12 10:12:52] 2025-10-12 14:11:48,653 | INFO     | transexitcode: 0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,654 | INFO     | exeerrorcode: 0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,654 | INFO     | exeerrordiag: 
[2025-10-12 10:12:52] 2025-10-12 14:11:48,654 | INFO     | exitcode: 0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,654 | INFO     | exitmsg: OK
[2025-10-12 10:12:52] 2025-10-12 14:11:48,654 | INFO     | cpuconsumptiontime: 57406 s
[2025-10-12 10:12:52] 2025-10-12 14:11:48,654 | INFO     | nevents: 400
[2025-10-12 10:12:52] 2025-10-12 14:11:48,655 | INFO     | neventsw: 0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,655 | INFO     | pid: 4013
[2025-10-12 10:12:52] 2025-10-12 14:11:48,655 | INFO     | pgrp: 4013
[2025-10-12 10:12:52] 2025-10-12 14:11:48,655 | INFO     | corecount: 8
[2025-10-12 10:12:52] 2025-10-12 14:11:48,655 | INFO     | event service: False
[2025-10-12 10:12:52] 2025-10-12 14:11:48,656 | INFO     | sizes: {0: 2348857, 1: 2348857, 6: 2349147, 11: 2349175, 7725: 2376776, 7727: 2385774, 7729: 2385986, 7737: 2386180}
[2025-10-12 10:12:52] 2025-10-12 14:11:48,656 | INFO     | --------------------------------------------------
[2025-10-12 10:12:52] 2025-10-12 14:11:48,656 | INFO     | 
[2025-10-12 10:12:52] 2025-10-12 14:11:48,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 10:12:52] 2025-10-12 14:11:48,683 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,684 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,684 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,684 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,684 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,685 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,685 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,685 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,685 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,685 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,686 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,686 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,686 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,686 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,686 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,686 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:12:52] 2025-10-12 14:11:48,687 | INFO     | job 6839866141 has completed (purged errors)
[2025-10-12 10:12:52] 2025-10-12 14:11:48,687 | INFO     | overall cleanup function is called
[2025-10-12 10:12:52] 2025-10-12 14:11:49,695 | INFO     | --- collectZombieJob: --- 10, [4013]
[2025-10-12 10:12:52] 2025-10-12 14:11:49,695 | INFO     | zombie collector waiting for pid 4013
[2025-10-12 10:12:52] 2025-10-12 14:11:49,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:12:52] 2025-10-12 14:11:49,696 | INFO     | collected zombie processes
[2025-10-12 10:12:52] 2025-10-12 14:11:49,696 | INFO     | will attempt to kill all subprocesses of pid=4013
[2025-10-12 10:12:52] 2025-10-12 14:11:49,787 | INFO     | process IDs to be killed: [4013] (in reverse order)
[2025-10-12 10:12:52] 2025-10-12 14:11:49,845 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:12:52] 2025-10-12 14:11:49,845 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:12:52] 2025-10-12 14:11:49,849 | INFO     | did not find any defunct processes belonging to 4013
[2025-10-12 10:12:52] 2025-10-12 14:11:49,853 | INFO     | did not find any defunct processes belonging to 4013
[2025-10-12 10:12:52] 2025-10-12 14:11:49,853 | INFO     | ready for new job
[2025-10-12 10:12:52] 2025-10-12 14:11:49,853 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:12:52] 2025-10-12 14:11:49,855 | INFO     | ***************************************
[2025-10-12 10:12:52] 2025-10-12 14:11:49,856 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:12:52] 2025-10-12 14:11:49,856 | INFO     | ***************************************
[2025-10-12 10:12:52] 2025-10-12 14:11:49,856 | INFO     | 
[2025-10-12 10:12:52] 2025-10-12 14:11:49,856 | INFO     | architecture information:
[2025-10-12 10:12:52] 2025-10-12 14:11:49,857 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:12:52] 2025-10-12 14:11:49,875 | INFO     | cat /etc/os-release:
[2025-10-12 10:12:52] NAME="CentOS Linux"
[2025-10-12 10:12:52] VERSION="7 (Core)"
[2025-10-12 10:12:52] ID="centos"
[2025-10-12 10:12:52] ID_LIKE="rhel fedora"
[2025-10-12 10:12:52] VERSION_ID="7"
[2025-10-12 10:12:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:12:52] ANSI_COLOR="0;31"
[2025-10-12 10:12:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:12:52] HOME_URL="https://www.centos.org/"
[2025-10-12 10:12:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:12:52] 
[2025-10-12 10:12:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:12:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:12:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:12:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:12:52] 
[2025-10-12 10:12:52] 2025-10-12 14:11:49,875 | INFO     | ***************************************
[2025-10-12 10:12:52] 2025-10-12 14:11:50,378 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 10:12:52] 2025-10-12 14:11:50,400 | INFO     | sufficient remaining disk space (18583912448 B)
[2025-10-12 10:12:52] 2025-10-12 14:11:50,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:12:52] 2025-10-12 14:11:50,401 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:12:52] 2025-10-12 14:11:50,401 | INFO     | update_server=False
[2025-10-12 10:12:52] 2025-10-12 14:11:50,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:12:52] 2025-10-12 14:11:50,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:12:52] 2025-10-12 14:11:50,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:12:52] 2025-10-12 14:11:50,402 | INFO     | aborting loop
[2025-10-12 10:12:52] 2025-10-12 14:11:50,701 | INFO     | all data control threads have been joined
[2025-10-12 10:12:52] 2025-10-12 14:11:51,407 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:51,408 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:51,408 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:51,464 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:12:52] 2025-10-12 14:11:51,528 | INFO     | all job control threads have been joined
[2025-10-12 10:12:52] 2025-10-12 14:11:51,581 | INFO     | all payload control threads have been joined
[2025-10-12 10:12:52] 2025-10-12 14:11:51,707 | INFO     | [data] control thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:51,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:12:52] 2025-10-12 14:11:52,020 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,315 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,534 | INFO     | [job] control thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,587 | INFO     | [payload] control thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,660 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,740 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,786 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,829 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:52,869 | INFO     | [job] validate thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:53,470 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:11:55,791 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:12:00,525 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:12:52] 2025-10-12 14:12:01,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:12:52] 2025-10-12 14:12:20,723 | INFO     | PID=29949 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 10:12:52] 2025-10-12 14:12:20,723 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:12:52] 2025-10-12 14:12:20,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:12:52] 2025-10-12 14:12:20,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:12:52] 2025-10-12 14:12:46,779 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:12:52] 2025-10-12 14:12:46,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140480625932096)>', '<ExcThread(monitor, started 140480033572608)>']
[2025-10-12 10:12:52] 2025-10-12 14:12:46,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:12:52] 2025-10-12 14:12:46,842 | INFO     | [monitor] control thread has ended
[2025-10-12 10:12:52] 2025-10-12 14:12:51,838 | INFO     | all workflow threads have been joined
[2025-10-12 10:12:52] 2025-10-12 14:12:51,844 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:12:52] 2025-10-12 14:12:51,844 | INFO     | traces error code: 0
[2025-10-12 10:12:52] 2025-10-12 14:12:51,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:12:52] 2025-10-12 14:12:52,030 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:12:52] 2025-10-12 14:12:52,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:12:52] 2025-10-12 14:12:52,039 [wrapper] pilotpid: 29949
[2025-10-12 10:12:52] 2025-10-12 14:12:52,044 [wrapper] Pilot exit status: 0
[2025-10-12 10:12:52] 2025-10-12 14:12:52,064 [wrapper] pandaids: 6839866141
[2025-10-12 10:12:52] 2025-10-12 14:12:52,124 [wrapper] cleanup supervisor_pilot  5069 29950
[2025-10-12 10:12:52] 2025-10-12 14:12:52,128 [wrapper] Test setup, not cleaning
[2025-10-12 10:12:52] 2025-10-12 14:12:52,133 [wrapper] apfmon messages muted
[2025-10-12 10:12:52] 2025-10-12 14:12:52,137 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:12:52] 2025-10-12 14:12:52,142 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:12:52]  *** Error codes and diagnostics ***
[2025-10-12 10:12:52]     "exeErrorCode": 0,
[2025-10-12 10:12:52]     "exeErrorDiag": "",
[2025-10-12 10:12:52]     "pilotErrorCode": 0,
[2025-10-12 10:12:52]     "pilotErrorDiag": "",
[2025-10-12 10:12:52]  *** Listing of results directory ***
[2025-10-12 10:12:52] total 416792
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 05:51 pilot3.tar.gz
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 06:10 queuedata.json
[2025-10-12 10:12:52] -rwx------ 1 boincer umatlas     36292 Oct 12 06:11 runpilot2-wrapper.sh
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas       100 Oct 12 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:12:52] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 08:02 run_atlas
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas       105 Oct 12 08:02 job.xml
[2025-10-12 10:12:52] -rw-r--r-- 2 boincer umatlas 220893644 Oct 12 08:02 EVNT.46676267._003610.pool.root.1
[2025-10-12 10:12:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:02 start_atlas.sh
[2025-10-12 10:12:52] drwxrwx--x 2 boincer umatlas      4096 Oct 12 08:02 shared
[2025-10-12 10:12:52] -rw-r--r-- 2 boincer umatlas    569685 Oct 12 08:02 input.tar.gz
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas         0 Oct 12 08:02 boinc_lockfile
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 08:02 pandaJob.out
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas    975520 Oct 12 08:02 agis_schedconf.cvmfs.json
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas   1560580 Oct 12 08:02 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:12:52] drwx------ 5 boincer umatlas      4096 Oct 12 08:02 pilot3
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas 199060693 Oct 12 10:11 HITS.46676269._075859.pool.root.1
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas        95 Oct 12 10:11 pilot_heartbeat.json
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas       529 Oct 12 10:11 boinc_task_state.xml
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas      1051 Oct 12 10:11 memory_monitor_summary.json
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas    380550 Oct 12 10:11 log.46676269._075859.job.log.tgz.1
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas      7845 Oct 12 10:11 heartbeat.json
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 10:12 init_data.xml
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 10:12 boinc_mmap_file
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas        27 Oct 12 10:12 wrapper_checkpoint.txt
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas      4818 Oct 12 10:12 pilotlog.txt
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas   1089914 Oct 12 10:12 log.46676269._075859.job.log.1
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas       357 Oct 12 10:12 output.list
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas       620 Oct 12 10:12 runtime_log
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas   1484800 Oct 12 10:12 result.tar.gz
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas       660 Oct 12 10:12 SE6MDm0D8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRQjNDmTbMh3n.diag
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 10:12 runtime_log.err
[2025-10-12 10:12:52] -rw-r--r-- 1 boincer umatlas     20842 Oct 12 10:12 stderr.txt
[2025-10-12 10:12:52] HITS file was successfully produced:
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas 199060693 Oct 12 10:11 shared/HITS.pool.root.1
[2025-10-12 10:12:52]  *** Contents of shared directory: ***
[2025-10-12 10:12:52] total 412148
[2025-10-12 10:12:52] -rw-r--r-- 2 boincer umatlas 220893644 Oct 12 08:02 ATLAS.root_0
[2025-10-12 10:12:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 08:02 start_atlas.sh
[2025-10-12 10:12:52] -rw-r--r-- 2 boincer umatlas    569685 Oct 12 08:02 input.tar.gz
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas 199060693 Oct 12 10:11 HITS.pool.root.1
[2025-10-12 10:12:52] -rw------- 1 boincer umatlas   1484800 Oct 12 10:12 result.tar.gz
10:12:53 (26176): run_atlas exited; CPU time 57341.256565
10:12:53 (26176): called boinc_finish(0)

</stderr_txt>
]]>

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