Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:38:49 (422559): wrapper (7.7.26015): starting
08:38:49 (422559): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 08:38:49] Arguments: --nthreads 8
[2025-10-12 08:38:49] Threads: 8
[2025-10-12 08:38:49] Checking for CVMFS
[2025-10-12 08:38:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:38:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:38:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:39:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:39:10] 2.13.2.0 4499 50278 134192 151620 1 127 24575958 40960000 9599 16776704 0 43050524 99.780 25266561 37893 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 08:39:10] CVMFS is ok
[2025-10-12 08:39:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:39:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:39:10] Further information can be found at the LHC@home message board.
[2025-10-12 08:39:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:39:10] Checking for apptainer binary...
[2025-10-12 08:39:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:39:10] Running /usr/bin/apptainer --version
[2025-10-12 08:39:10] apptainer version 1.4.3-1.el9
[2025-10-12 08:39:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:39:11] c-211-8.aglt2.org
[2025-10-12 08:39:11] apptainer works
[2025-10-12 08:39:11] Set ATHENA_PROC_NUMBER=8
[2025-10-12 08:39:11] Set ATHENA_CORE_NUMBER=8
[2025-10-12 08:39:11] Starting ATLAS job with PandaID=6839658301
[2025-10-12 08:39:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:39:02]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:39:02] 2025-10-12 15:38:18,823 | INFO     | sum of deviations: -26087587387.965714
[2025-10-12 11:39:02] 2025-10-12 15:38:18,883 | INFO     | mean x: 1760278154.097143
[2025-10-12 11:39:02] 2025-10-12 15:38:18,883 | INFO     | mean y: 2541740.4685714287
[2025-10-12 11:39:02] 2025-10-12 15:38:18,883 | INFO     | -- intersect: 27636875680.021515
[2025-10-12 11:39:02] 2025-10-12 15:38:18,883 | INFO     | intersect: 27636875680.021515
[2025-10-12 11:39:02] 2025-10-12 15:38:18,884 | INFO     | chi2: 2.5491849159624884
[2025-10-12 11:39:02] 2025-10-12 15:38:18,884 | INFO     | sum of square deviations: 1523345304.8000014
[2025-10-12 11:39:02] 2025-10-12 15:38:18,886 | INFO     | sum of deviations: -13868880628.000004
[2025-10-12 11:39:02] 2025-10-12 15:38:18,886 | INFO     | mean x: 1760278001.6
[2025-10-12 11:39:02] 2025-10-12 15:38:18,886 | INFO     | mean y: 2554919.3529411764
[2025-10-12 11:39:02] 2025-10-12 15:38:18,886 | INFO     | -- intersect: 16028524474.226759
[2025-10-12 11:39:02] 2025-10-12 15:38:18,952 | INFO     | intersect: 16028524474.226759
[2025-10-12 11:39:02] 2025-10-12 15:38:18,952 | INFO     | chi2: 1.8503390242947837
[2025-10-12 11:39:02] 2025-10-12 15:38:18,953 | INFO     | current chi2=1.8503390242947837 (change=27.41448402945078 %)
[2025-10-12 11:39:02] 2025-10-12 15:38:18,953 | INFO     | sum of square deviations: 1392835224.4484837
[2025-10-12 11:39:02] 2025-10-12 15:38:18,954 | INFO     | sum of deviations: -12984100389.927267
[2025-10-12 11:39:02] 2025-10-12 15:38:18,955 | INFO     | mean x: 1760277849.0969696
[2025-10-12 11:39:02] 2025-10-12 15:38:18,955 | INFO     | mean y: 2555953.7454545456
[2025-10-12 11:39:02] 2025-10-12 15:38:18,955 | INFO     | -- intersect: 16411980346.275705
[2025-10-12 11:39:02] 2025-10-12 15:38:18,955 | INFO     | intersect: 16411980346.275705
[2025-10-12 11:39:02] 2025-10-12 15:38:18,955 | INFO     | chi2: 1.8492817705469726
[2025-10-12 11:39:02] 2025-10-12 15:38:19,060 | INFO     | current chi2=1.8492817705469726 (change=0.05713838026055902 %)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,060 | INFO     | right removable region: 164
[2025-10-12 11:39:02] 2025-10-12 15:38:19,061 | INFO     | sum of square deviations: 1523334934.8000014
[2025-10-12 11:39:02] 2025-10-12 15:38:19,062 | INFO     | sum of deviations: -52733727734.19996
[2025-10-12 11:39:02] 2025-10-12 15:38:19,062 | INFO     | mean x: 1760278306.6
[2025-10-12 11:39:02] 2025-10-12 15:38:19,062 | INFO     | mean y: 2570709.688235294
[2025-10-12 11:39:02] 2025-10-12 15:38:19,062 | INFO     | -- intersect: 60938635941.36368
[2025-10-12 11:39:02] 2025-10-12 15:38:19,063 | INFO     | intersect: 60938635941.36368
[2025-10-12 11:39:02] 2025-10-12 15:38:19,063 | INFO     | chi2: 1.0446801954113447
[2025-10-12 11:39:02] 2025-10-12 15:38:19,063 | INFO     | current chi2=1.0446801954113447 (change=59.01905001595744 %)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,084 | INFO     | sum of square deviations: 1392855346.8121254
[2025-10-12 11:39:02] 2025-10-12 15:38:19,085 | INFO     | sum of deviations: -49999538623.593925
[2025-10-12 11:39:02] 2025-10-12 15:38:19,086 | INFO     | mean x: 1760278459.0848484
[2025-10-12 11:39:02] 2025-10-12 15:38:19,086 | INFO     | mean y: 2567453.0424242425
[2025-10-12 11:39:02] 2025-10-12 15:38:19,086 | INFO     | -- intersect: 63191548997.1287
[2025-10-12 11:39:02] 2025-10-12 15:38:19,086 | INFO     | intersect: 63191548997.1287
[2025-10-12 11:39:02] 2025-10-12 15:38:19,087 | INFO     | chi2: 1.0309247609806529
[2025-10-12 11:39:02] 2025-10-12 15:38:19,087 | INFO     | current chi2=1.0309247609806529 (change=1.3167124724974422 %)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,087 | INFO     | left removable region: 20
[2025-10-12 11:39:02] 2025-10-12 15:38:19,088 | INFO     | sum of square deviations: 925833122.9999982
[2025-10-12 11:39:02] 2025-10-12 15:38:19,089 | INFO     | sum of deviations: -21779695431.333332
[2025-10-12 11:39:02] 2025-10-12 15:38:19,089 | INFO     | mean x: 1760278428.5833333
[2025-10-12 11:39:02] 2025-10-12 15:38:19,090 | INFO     | mean y: 2563587.6944444445
[2025-10-12 11:39:02] 2025-10-12 15:38:19,090 | INFO     | -- intersect: 41412108241.5544
[2025-10-12 11:39:02] 2025-10-12 15:38:19,090 | INFO     | intersect: 41412108241.5544
[2025-10-12 11:39:02] 2025-10-12 15:38:19,090 | INFO     | chi2: 0.25047498633408427
[2025-10-12 11:39:02] 2025-10-12 15:38:19,090 | INFO     | -- intersect: 41412108241.5544
[2025-10-12 11:39:02] 2025-10-12 15:38:19,091 | INFO     | current memory leak: -23.52 B/s (using 144 data points, chi2=0.25)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,091 | INFO     | could have reported an average CPU frequency of 2525 MHz (9 samples)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,092 | INFO     | ..............................
[2025-10-12 11:39:02] 2025-10-12 15:38:19,092 | INFO     | . Timing measurements:
[2025-10-12 11:39:02] 2025-10-12 15:38:19,092 | INFO     | . get job = 0 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,092 | INFO     | . initial setup = 4 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,092 | INFO     | . payload setup = 15 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,093 | INFO     | . stage-in = 0 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,093 | INFO     | . payload execution = 10647 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,093 | INFO     | . stage-out = 1 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,093 | INFO     | . log creation = 0 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,093 | INFO     | ..............................
[2025-10-12 11:39:02] 2025-10-12 15:38:19,382 | INFO     | 
[2025-10-12 11:39:02] 2025-10-12 15:38:19,383 | INFO     | job summary report
[2025-10-12 11:39:02] 2025-10-12 15:38:19,383 | INFO     | --------------------------------------------------
[2025-10-12 11:39:02] 2025-10-12 15:38:19,383 | INFO     | PanDA job id: 6839658301
[2025-10-12 11:39:02] 2025-10-12 15:38:19,383 | INFO     | task id: 46676269
[2025-10-12 11:39:02] 2025-10-12 15:38:19,384 | INFO     | errors: (none)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:39:02] 2025-10-12 15:38:19,384 | INFO     | pilot state: finished 
[2025-10-12 11:39:02] 2025-10-12 15:38:19,384 | INFO     | transexitcode: 0
[2025-10-12 11:39:02] 2025-10-12 15:38:19,384 | INFO     | exeerrorcode: 0
[2025-10-12 11:39:02] 2025-10-12 15:38:19,384 | INFO     | exeerrordiag: 
[2025-10-12 11:39:02] 2025-10-12 15:38:19,385 | INFO     | exitcode: 0
[2025-10-12 11:39:02] 2025-10-12 15:38:19,385 | INFO     | exitmsg: OK
[2025-10-12 11:39:02] 2025-10-12 15:38:19,385 | INFO     | cpuconsumptiontime: 56327 s
[2025-10-12 11:39:02] 2025-10-12 15:38:19,385 | INFO     | nevents: 400
[2025-10-12 11:39:02] 2025-10-12 15:38:19,385 | INFO     | neventsw: 0
[2025-10-12 11:39:02] 2025-10-12 15:38:19,385 | INFO     | pid: 434475
[2025-10-12 11:39:02] 2025-10-12 15:38:19,386 | INFO     | pgrp: 434475
[2025-10-12 11:39:02] 2025-10-12 15:38:19,386 | INFO     | corecount: 8
[2025-10-12 11:39:02] 2025-10-12 15:38:19,386 | INFO     | event service: False
[2025-10-12 11:39:02] 2025-10-12 15:38:19,386 | INFO     | sizes: {0: 2348630, 1: 2348885, 2: 2348885, 13: 2348913, 17: 2349231, 23: 2349259, 10663: 2378445, 10665: 2387443, 10667: 2387499, 10685: 2387785}
[2025-10-12 11:39:02] 2025-10-12 15:38:19,386 | INFO     | --------------------------------------------------
[2025-10-12 11:39:02] 2025-10-12 15:38:19,386 | INFO     | 
[2025-10-12 11:39:02] 2025-10-12 15:38:19,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 11:39:02] 2025-10-12 15:38:19,481 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,482 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,482 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:39:02] 2025-10-12 15:38:19,484 | INFO     | job 6839658301 has completed (purged errors)
[2025-10-12 11:39:02] 2025-10-12 15:38:19,486 | INFO     | overall cleanup function is called
[2025-10-12 11:39:02] 2025-10-12 15:38:19,901 | INFO     | number of running child processes to parent process 434475: 1
[2025-10-12 11:39:02] 2025-10-12 15:38:19,901 | INFO     | maximum number of monitored processes: 6
[2025-10-12 11:39:02] 2025-10-12 15:38:19,901 | INFO     | aborting job monitoring since job object (job id=6839658301) has expired
[2025-10-12 11:39:02] 2025-10-12 15:38:20,306 | INFO     | PID=426330 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 11:39:02] 2025-10-12 15:38:20,306 | INFO     | .. there are 9 such processes running
[2025-10-12 11:39:02] 2025-10-12 15:38:20,547 | INFO     | --- collectZombieJob: --- 10, [434475]
[2025-10-12 11:39:02] 2025-10-12 15:38:20,547 | INFO     | zombie collector waiting for pid 434475
[2025-10-12 11:39:02] 2025-10-12 15:38:20,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:39:02] 2025-10-12 15:38:20,547 | INFO     | collected zombie processes
[2025-10-12 11:39:02] 2025-10-12 15:38:20,548 | INFO     | will attempt to kill all subprocesses of pid=434475
[2025-10-12 11:39:02] 2025-10-12 15:38:20,923 | INFO     | process IDs to be killed: [434475] (in reverse order)
[2025-10-12 11:39:02] 2025-10-12 15:38:21,041 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:39:02] 2025-10-12 15:38:21,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:39:02] 2025-10-12 15:38:21,065 | INFO     | did not find any defunct processes belonging to 434475
[2025-10-12 11:39:02] 2025-10-12 15:38:21,097 | INFO     | did not find any defunct processes belonging to 434475
[2025-10-12 11:39:02] 2025-10-12 15:38:21,097 | INFO     | ready for new job
[2025-10-12 11:39:02] 2025-10-12 15:38:21,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:39:02] 2025-10-12 15:38:21,100 | INFO     | ***************************************
[2025-10-12 11:39:02] 2025-10-12 15:38:21,101 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:39:02] 2025-10-12 15:38:21,101 | INFO     | ***************************************
[2025-10-12 11:39:02] 2025-10-12 15:38:21,101 | INFO     | 
[2025-10-12 11:39:02] 2025-10-12 15:38:21,112 | INFO     | architecture information:
[2025-10-12 11:39:02] 2025-10-12 15:38:21,158 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:39:02] 2025-10-12 15:38:21,208 | INFO     | cat /etc/os-release:
[2025-10-12 11:39:02] NAME="CentOS Linux"
[2025-10-12 11:39:02] VERSION="7 (Core)"
[2025-10-12 11:39:02] ID="centos"
[2025-10-12 11:39:02] ID_LIKE="rhel fedora"
[2025-10-12 11:39:02] VERSION_ID="7"
[2025-10-12 11:39:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:39:02] ANSI_COLOR="0;31"
[2025-10-12 11:39:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:39:02] HOME_URL="https://www.centos.org/"
[2025-10-12 11:39:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:39:02] 
[2025-10-12 11:39:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:39:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:39:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:39:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:39:02] 
[2025-10-12 11:39:02] 2025-10-12 15:38:21,208 | INFO     | ***************************************
[2025-10-12 11:39:02] 2025-10-12 15:38:21,712 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 11:39:02] 2025-10-12 15:38:21,747 | INFO     | sufficient remaining disk space (63182995456 B)
[2025-10-12 11:39:02] 2025-10-12 15:38:21,748 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:39:02] 2025-10-12 15:38:21,748 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:39:02] 2025-10-12 15:38:21,748 | INFO     | update_server=False
[2025-10-12 11:39:02] 2025-10-12 15:38:21,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:39:02] 2025-10-12 15:38:21,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:39:02] 2025-10-12 15:38:21,750 | INFO     | aborting loop
[2025-10-12 11:39:02] 2025-10-12 15:38:21,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:39:02] 2025-10-12 15:38:22,199 | INFO     | all data control threads have been joined
[2025-10-12 11:39:02] 2025-10-12 15:38:22,200 | INFO     | all job control threads have been joined
[2025-10-12 11:39:02] 2025-10-12 15:38:22,434 | INFO     | all payload control threads have been joined
[2025-10-12 11:39:02] 2025-10-12 15:38:22,762 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:22,763 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:22,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:39:02] 2025-10-12 15:38:23,167 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:23,207 | INFO     | [data] control thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:23,257 | INFO     | [job] control thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:23,431 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:23,440 | INFO     | [payload] control thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:23,952 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:24,041 | INFO     | [job] validate thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:24,136 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:24,164 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:24,167 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:24,295 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:24,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:39:02] 2025-10-12 15:38:24,851 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:25,400 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:25,771 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:39:02] 2025-10-12 15:38:53,301 | INFO     | PID=426330 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 11:39:02] 2025-10-12 15:38:53,301 | INFO     | .. there are 9 such processes running
[2025-10-12 11:39:02] 2025-10-12 15:38:53,303 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:39:02] 2025-10-12 15:38:53,303 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:39:02] 2025-10-12 15:38:53,303 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:39:02] 2025-10-12 15:38:55,706 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:39:02] 2025-10-12 15:38:57,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394945275712)>', '<ExcThread(monitor, started 140394159404800)>']
[2025-10-12 11:39:02] 2025-10-12 15:38:57,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:39:02] 2025-10-12 15:38:57,328 | INFO     | [monitor] control thread has ended
[2025-10-12 11:39:02] 2025-10-12 15:39:02,036 | INFO     | all workflow threads have been joined
[2025-10-12 11:39:02] 2025-10-12 15:39:02,036 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:39:02] 2025-10-12 15:39:02,036 | INFO     | traces error code: 0
[2025-10-12 11:39:02] 2025-10-12 15:39:02,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:39:02] 2025-10-12 15:39:02,674 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:39:02] 2025-10-12 15:39:02,679 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:39:02] 2025-10-12 15:39:02,683 [wrapper] pilotpid: 426330
[2025-10-12 11:39:02] 2025-10-12 15:39:02,687 [wrapper] Pilot exit status: 0
[2025-10-12 11:39:02] 2025-10-12 15:39:02,707 [wrapper] pandaids: 6839658301
[2025-10-12 11:39:02] 2025-10-12 15:39:02,772 [wrapper] cleanup supervisor_pilot  692960 426331
[2025-10-12 11:39:02] 2025-10-12 15:39:02,776 [wrapper] Test setup, not cleaning
[2025-10-12 11:39:02] 2025-10-12 15:39:02,780 [wrapper] apfmon messages muted
[2025-10-12 11:39:02] 2025-10-12 15:39:02,785 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:39:02] 2025-10-12 15:39:02,795 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:39:02]  *** Error codes and diagnostics ***
[2025-10-12 11:39:02]     "exeErrorCode": 0,
[2025-10-12 11:39:02]     "exeErrorDiag": "",
[2025-10-12 11:39:02]     "pilotErrorCode": 0,
[2025-10-12 11:39:02]     "pilotErrorDiag": "",
[2025-10-12 11:39:02]  *** Listing of results directory ***
[2025-10-12 11:39:02] total 408760
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 11:39:02] -rwx------. 1 boincer umatlas     36292 Oct 12 03:17 runpilot2-wrapper.sh
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 03:17 queuedata.json
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas       100 Oct 12 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:39:02] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 08:38 run_atlas
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas       105 Oct 12 08:38 job.xml
[2025-10-12 11:39:02] -rw-r--r--. 2 boincer umatlas 220343904 Oct 12 08:38 EVNT.46676267._003497.pool.root.1
[2025-10-12 11:39:02] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 08:38 shared
[2025-10-12 11:39:02] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 08:38 input.tar.gz
[2025-10-12 11:39:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:38 start_atlas.sh
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas         0 Oct 12 08:38 boinc_lockfile
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 08:39 pandaJob.out
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas    975512 Oct 12 08:39 agis_schedconf.cvmfs.json
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas   1560580 Oct 12 08:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:39:02] drwx------. 5 boincer umatlas      4096 Oct 12 08:39 pilot3
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas      6612 Oct 12 11:31 init_data.xml
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas 190551534 Oct 12 11:36 HITS.46676269._073458.pool.root.1
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas       530 Oct 12 11:37 boinc_task_state.xml
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas      1046 Oct 12 11:37 memory_monitor_summary.json
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas    421300 Oct 12 11:37 log.46676269._073458.job.log.tgz.1
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas      7827 Oct 12 11:38 heartbeat.json
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas        95 Oct 12 11:38 pilot_heartbeat.json
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas        27 Oct 12 11:38 wrapper_checkpoint.txt
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 11:38 boinc_mmap_file
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas      4822 Oct 12 11:39 pilotlog.txt
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas   1468698 Oct 12 11:39 log.46676269._073458.job.log.1
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas       357 Oct 12 11:39 output.list
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas       620 Oct 12 11:39 runtime_log
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas   1904640 Oct 12 11:39 result.tar.gz
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas      8699 Oct 12 11:39 runtime_log.err
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas       653 Oct 12 11:39 GdXNDmmV5R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2QTMDmvWn9im.diag
[2025-10-12 11:39:02] -rw-r--r--. 1 boincer umatlas     21170 Oct 12 11:39 stderr.txt
[2025-10-12 11:39:02] HITS file was successfully produced:
[2025-10-12 11:39:02] -rw-------. 1 boincer umatlas 190551534 Oct 12 11:36 shared/HITS.pool.root.1
[2025-10-12 11:39:03]  *** Contents of shared directory: ***
[2025-10-12 11:39:03] total 403708
[2025-10-12 11:39:03] -rw-r--r--. 2 boincer umatlas 220343904 Oct 12 08:38 ATLAS.root_0
[2025-10-12 11:39:03] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 08:38 input.tar.gz
[2025-10-12 11:39:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 08:38 start_atlas.sh
[2025-10-12 11:39:03] -rw-------. 1 boincer umatlas 190551534 Oct 12 11:36 HITS.pool.root.1
[2025-10-12 11:39:03] -rw-------. 1 boincer umatlas   1904640 Oct 12 11:39 result.tar.gz
11:39:04 (422559): run_atlas exited; CPU time 56558.741500
11:39:04 (422559): called boinc_finish(0)

</stderr_txt>
]]>

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