Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:07:33 (415450): wrapper (7.7.26015): starting
05:07:33 (415450): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 05:07:33] Arguments: --nthreads 8
[2025-10-12 05:07:33] Threads: 8
[2025-10-12 05:07:33] Checking for CVMFS
[2025-10-12 05:07:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:07:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:07:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:07:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:07:35] 2.11.3.0 1872 29899 227896 151619 3 543 31295856 45568000 14146 130560 0 186493132 99.865 74273817 22913 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 05:07:35] CVMFS is ok
[2025-10-12 05:07:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:07:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:07:35] Further information can be found at the LHC@home message board.
[2025-10-12 05:07:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:07:35] Checking for apptainer binary...
[2025-10-12 05:07:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:07:35] Running /usr/bin/apptainer --version
[2025-10-12 05:07:35] apptainer version 1.4.1-1.el9
[2025-10-12 05:07:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:07:36] wns0012.triumf.lcg
[2025-10-12 05:07:36] apptainer works
[2025-10-12 05:07:36] Set ATHENA_PROC_NUMBER=8
[2025-10-12 05:07:36] Set ATHENA_CORE_NUMBER=8
[2025-10-12 05:07:36] Starting ATLAS job with PandaID=6839866018
[2025-10-12 05:07:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:14:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | WARNING  | wrong length of table data, x=[1760271017.0, 1760271078.0], y=[1965.0, 605765.0] (must be same and length>=4)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | ..............................
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . Timing measurements:
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . get job = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . initial setup = 6 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . payload setup = 36 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . stage-in = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . payload execution = 101 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . stage-out = 2 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . log creation = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | ..............................
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839866018/pilotlog.txt
[2025-10-12 05:14:40] 2025-10-12 12:14:06,805 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 05:14:40] - Log from pilotlog.txt -
[2025-10-12 05:14:40] 2025-10-12 12:14:06,784 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839866018/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | INFO     | extracted standard info from prmon json
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | WARNING  | wrong length of table data, x=[1760271017.0, 1760271078.0], y=[1965.0, 605765.0] (must be same and length>=4)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | ..............................
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . Timing measurements:
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . get job = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . initial setup = 6 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . payload setup = 36 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . stage-in = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . payload execution = 101 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . stage-out = 2 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . log creation = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | ..............................
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839866018/pilotlog.txt
[2025-10-12 05:14:40] 2025-10-12 12:14:06,805 | WARNING  | 
[2025-10-12 05:14:40] [begin log extracts]
[2025-10-12 05:14:40] - Log from pilotlog.txt -
[2025-10-12 05:14:40] 2025-10-12 12:14:06,784 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839866018/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | INFO     | extracted standard info from prmon json
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:14:40] 2025-10-12 12:14:06,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | WARNING  | wrong length of table data, x=[1760271017.0, 1760271078.0], y=[1965.0, 605765.0] (must be same and length>=4)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | ..............................
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . Timing measurements:
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . get job = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . initial setup = 6 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,786 | INFO     | . payload setup = 36 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . stage-in = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . payload execution = 101 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . stage-out = 2 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | . log creation = 0 s
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | ..............................
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 05:14:40] 2025-10-12 12:14:06,787 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839866018/pilotlog.txt
[2025-10-12 05:14:40] [end log extracts]
[2025-10-12 05:14:40] 2025-10-12 12:14:06,806 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 05:14:40] 2025-10-12 12:14:06,806 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 05:14:40] 2025-10-12 12:14:07,128 | INFO     | 
[2025-10-12 05:14:40] 2025-10-12 12:14:07,129 | INFO     | job summary report
[2025-10-12 05:14:40] 2025-10-12 12:14:07,129 | INFO     | --------------------------------------------------
[2025-10-12 05:14:40] 2025-10-12 12:14:07,129 | INFO     | PanDA job id: 6839866018
[2025-10-12 05:14:40] 2025-10-12 12:14:07,129 | INFO     | task id: 46676269
[2025-10-12 05:14:40] 2025-10-12 12:14:07,129 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 05:11:21,457 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 05:14:40] 2025-10-12 12:14:07,130 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 05:14:40] 2025-10-12 12:14:07,130 | INFO     | pilot state: failed 
[2025-10-12 05:14:40] 2025-10-12 12:14:07,130 | INFO     | transexitcode: 65
[2025-10-12 05:14:40] 2025-10-12 12:14:07,144 | INFO     | exeerrorcode: 65
[2025-10-12 05:14:40] 2025-10-12 12:14:07,144 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 05:14:40] 2025-10-12 12:14:07,144 | INFO     | exitcode: 65
[2025-10-12 05:14:40] 2025-10-12 12:14:07,144 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 05:14:40] 2025-10-12 12:14:07,144 | INFO     | cpuconsumptiontime: 21 s
[2025-10-12 05:14:40] 2025-10-12 12:14:07,144 | INFO     | nevents: 0
[2025-10-12 05:14:40] 2025-10-12 12:14:07,155 | INFO     | neventsw: 0
[2025-10-12 05:14:40] 2025-10-12 12:14:07,155 | INFO     | pid: 426004
[2025-10-12 05:14:40] 2025-10-12 12:14:07,155 | INFO     | pgrp: 426004
[2025-10-12 05:14:40] 2025-10-12 12:14:07,155 | INFO     | corecount: 8
[2025-10-12 05:14:40] 2025-10-12 12:14:07,155 | INFO     | event service: False
[2025-10-12 05:14:40] 2025-10-12 12:14:07,156 | INFO     | sizes: {0: 2348683, 1: 2348882, 12: 2348882, 23: 2348910, 25: 2349200, 34: 2349228, 142: 2372525, 146: 2376845, 292: 2377011}
[2025-10-12 05:14:40] 2025-10-12 12:14:07,156 | INFO     | --------------------------------------------------
[2025-10-12 05:14:40] 2025-10-12 12:14:07,156 | INFO     | 
[2025-10-12 05:14:40] 2025-10-12 12:14:07,156 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 05:14:40] 2025-10-12 12:14:07,337 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,338 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | job 6839866018 has completed (purged errors)
[2025-10-12 05:14:40] 2025-10-12 12:14:07,339 | INFO     | overall cleanup function is called
[2025-10-12 05:14:40] 2025-10-12 12:14:08,351 | INFO     | --- collectZombieJob: --- 10, [426004]
[2025-10-12 05:14:40] 2025-10-12 12:14:08,351 | INFO     | zombie collector waiting for pid 426004
[2025-10-12 05:14:40] 2025-10-12 12:14:08,351 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:14:40] 2025-10-12 12:14:08,351 | INFO     | collected zombie processes
[2025-10-12 05:14:40] 2025-10-12 12:14:08,351 | INFO     | will attempt to kill all subprocesses of pid=426004
[2025-10-12 05:14:40] 2025-10-12 12:14:08,747 | INFO     | process IDs to be killed: [426004] (in reverse order)
[2025-10-12 05:14:40] 2025-10-12 12:14:09,078 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:14:40] 2025-10-12 12:14:09,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:14:40] 2025-10-12 12:14:09,116 | INFO     | did not find any defunct processes belonging to 426004
[2025-10-12 05:14:40] 2025-10-12 12:14:09,151 | INFO     | did not find any defunct processes belonging to 426004
[2025-10-12 05:14:40] 2025-10-12 12:14:09,152 | INFO     | ready for new job
[2025-10-12 05:14:40] 2025-10-12 12:14:09,152 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:14:40] 2025-10-12 12:14:09,171 | INFO     | ***************************************
[2025-10-12 05:14:40] 2025-10-12 12:14:09,171 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 05:14:40] 2025-10-12 12:14:09,171 | INFO     | ***************************************
[2025-10-12 05:14:40] 2025-10-12 12:14:09,171 | INFO     | 
[2025-10-12 05:14:40] 2025-10-12 12:14:09,173 | INFO     | architecture information:
[2025-10-12 05:14:40] 2025-10-12 12:14:09,190 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:14:40] 2025-10-12 12:14:09,319 | INFO     | cat /etc/os-release:
[2025-10-12 05:14:40] NAME="CentOS Linux"
[2025-10-12 05:14:40] VERSION="7 (Core)"
[2025-10-12 05:14:40] ID="centos"
[2025-10-12 05:14:40] ID_LIKE="rhel fedora"
[2025-10-12 05:14:40] VERSION_ID="7"
[2025-10-12 05:14:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:14:40] ANSI_COLOR="0;31"
[2025-10-12 05:14:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:14:40] HOME_URL="https://www.centos.org/"
[2025-10-12 05:14:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:14:40] 
[2025-10-12 05:14:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:14:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:14:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:14:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:14:40] 
[2025-10-12 05:14:40] 2025-10-12 12:14:09,319 | INFO     | ***************************************
[2025-10-12 05:14:40] 2025-10-12 12:14:09,822 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 05:14:40] 2025-10-12 12:14:09,893 | INFO     | sufficient remaining disk space (1256089190400 B)
[2025-10-12 05:14:40] 2025-10-12 12:14:09,894 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:14:40] 2025-10-12 12:14:09,894 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:14:40] 2025-10-12 12:14:09,894 | INFO     | update_server=False
[2025-10-12 05:14:40] 2025-10-12 12:14:09,894 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:14:40] 2025-10-12 12:14:09,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:14:40] 2025-10-12 12:14:10,080 | INFO     | all data control threads have been joined
[2025-10-12 05:14:40] 2025-10-12 12:14:10,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:14:40] 2025-10-12 12:14:10,548 | INFO     | aborting loop
[2025-10-12 05:14:40] 2025-10-12 12:14:10,722 | INFO     | all job control threads have been joined
[2025-10-12 05:14:40] 2025-10-12 12:14:10,901 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:10,925 | INFO     | all payload control threads have been joined
[2025-10-12 05:14:40] 2025-10-12 12:14:11,086 | INFO     | [data] control thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,376 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,549 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,554 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,586 | INFO     | [job] validate thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,728 | INFO     | [job] control thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,952 | INFO     | [payload] control thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:11,966 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:12,102 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:12,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:14:40] 2025-10-12 12:14:12,157 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:14:40] 2025-10-12 12:14:12,171 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:12,260 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:12,275 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:13,163 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:16,164 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:14:40] 2025-10-12 12:14:23,680 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:14:40] 2025-10-12 12:14:24,101 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513212618560)>', '<ExcThread(monitor, started 140512539440896)>']
[2025-10-12 05:14:40] 2025-10-12 12:14:29,128 | INFO     | all workflow threads have been joined
[2025-10-12 05:14:40] 2025-10-12 12:14:29,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:14:40] 2025-10-12 12:14:29,128 | INFO     | traces error code: 0
[2025-10-12 05:14:40] 2025-10-12 12:14:29,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:14:40] 2025-10-12 12:14:39,095 | INFO     | PID=419193 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 05:14:40] 2025-10-12 12:14:39,095 | INFO     | .. there are 26 such processes running
[2025-10-12 05:14:40] 2025-10-12 12:14:39,096 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:14:40] 2025-10-12 12:14:39,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:14:40] 2025-10-12 12:14:39,097 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:14:40] 2025-10-12 12:14:39,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:14:40] 2025-10-12 12:14:39,097 | INFO     | [monitor] control thread has ended
[2025-10-12 05:14:40] 2025-10-12 12:14:39,222 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:14:40] 2025-10-12 12:14:39,225 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:14:40] 2025-10-12 12:14:39,226 [wrapper] pilotpid: 419193
[2025-10-12 05:14:40] 2025-10-12 12:14:39,228 [wrapper] Pilot exit status: 0
[2025-10-12 05:14:40] 2025-10-12 12:14:39,305 [wrapper] pandaids: 6839866018
[2025-10-12 05:14:40] 2025-10-12 12:14:39,673 [wrapper] cleanup supervisor_pilot  419199 419194
[2025-10-12 05:14:40] 2025-10-12 12:14:39,711 [wrapper] Test setup, not cleaning
[2025-10-12 05:14:40] 2025-10-12 12:14:39,722 [wrapper] apfmon messages muted
[2025-10-12 05:14:40] 2025-10-12 12:14:39,732 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:14:40] 2025-10-12 12:14:39,738 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:14:40]  *** Error codes and diagnostics ***
[2025-10-12 05:14:40]     "exeErrorCode": 65,
[2025-10-12 05:14:40]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 05:14:40]     "pilotErrorCode": 1305,
[2025-10-12 05:14:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 05:14:40]  *** Listing of results directory ***
[2025-10-12 05:14:40] total 219564
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc    563267 Oct  7 00:02 pilot3.tar.gz
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc      5112 Oct 12 03:05 queuedata.json
[2025-10-12 05:14:40] -rwx------. 1 boinc boinc     36292 Oct 12 03:07 runpilot2-wrapper.sh
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc       100 Oct 12 05:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:14:40] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 05:07 run_atlas
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc       105 Oct 12 05:07 job.xml
[2025-10-12 05:14:40] -rw-r--r--. 2 boinc boinc 220672513 Oct 12 05:07 EVNT.46676267._003606.pool.root.1
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc      6444 Oct 12 05:07 init_data.xml
[2025-10-12 05:14:40] -rw-r--r--. 2 boinc boinc     15120 Oct 12 05:07 start_atlas.sh
[2025-10-12 05:14:40] drwxrwx--x. 2 boinc boinc      4096 Oct 12 05:07 shared
[2025-10-12 05:14:40] -rw-r--r--. 2 boinc boinc    576707 Oct 12 05:07 input.tar.gz
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc         0 Oct 12 05:07 boinc_lockfile
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc      2550 Oct 12 05:07 pandaJob.out
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc    975520 Oct 12 05:08 agis_schedconf.cvmfs.json
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc   1560580 Oct 12 05:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:14:40] drwx------. 4 boinc boinc      4096 Oct 12 05:08 pilot3
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc       525 Oct 12 05:11 boinc_task_state.xml
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc       985 Oct 12 05:11 memory_monitor_summary.json
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc     23046 Oct 12 05:11 log.46676269._075753.job.log.tgz.1
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc      8391 Oct 12 05:14 heartbeat.json
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc      8192 Oct 12 05:14 boinc_mmap_file
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc        23 Oct 12 05:14 wrapper_checkpoint.txt
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc       822 Oct 12 05:14 pilotlog.txt
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc        95 Oct 12 05:14 pilot_heartbeat.json
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc    102545 Oct 12 05:14 log.46676269._075753.job.log.1
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc       188 Oct 12 05:14 output.list
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc       620 Oct 12 05:14 runtime_log
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc    143360 Oct 12 05:14 result.tar.gz
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc      8526 Oct 12 05:14 runtime_log.err
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc       644 Oct 12 05:14 MTCMDmaA8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbPjNDmXMkIYn.diag
[2025-10-12 05:14:40] -rw-r--r--. 1 boinc boinc     21861 Oct 12 05:14 stderr.txt
[2025-10-12 05:14:40] No HITS result produced
[2025-10-12 05:14:40]  *** Contents of shared directory: ***
[2025-10-12 05:14:40] total 216228
[2025-10-12 05:14:40] -rw-r--r--. 2 boinc boinc 220672513 Oct 12 05:07 ATLAS.root_0
[2025-10-12 05:14:40] -rw-r--r--. 2 boinc boinc     15120 Oct 12 05:07 start_atlas.sh
[2025-10-12 05:14:40] -rw-r--r--. 2 boinc boinc    576707 Oct 12 05:07 input.tar.gz
[2025-10-12 05:14:40] -rw-------. 1 boinc boinc    143360 Oct 12 05:14 result.tar.gz
05:14:41 (415450): run_atlas exited; CPU time 32.988180
05:14:41 (415450): called boinc_finish(0)

</stderr_txt>
]]>

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