Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:42:24 (3937400): wrapper (7.7.26015): starting
10:42:24 (3937400): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:42:24] Arguments: --nthreads 8
[2025-10-12 10:42:24] Threads: 8
[2025-10-12 10:42:24] Checking for CVMFS
[2025-10-12 10:42:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:42:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:42:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:42:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:42:26] 2.13.2.0 831533 129378 275168 151623 3 197 29816010 32935937 43237 16776704 0 274479269 99.648 248807487 20485 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 10:42:26] CVMFS is ok
[2025-10-12 10:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:42:26] Further information can be found at the LHC@home message board.
[2025-10-12 10:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:42:26] Checking for apptainer binary...
[2025-10-12 10:42:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:42:26] Running /usr/bin/apptainer --version
[2025-10-12 10:42:28] apptainer version 1.4.3-1.el9
[2025-10-12 10:42:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:42:30] c6-2-11-2.aglt2.org
[2025-10-12 10:42:30] apptainer works
[2025-10-12 10:42:30] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:42:30] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:42:30] Starting ATLAS job with PandaID=6839865915
[2025-10-12 10:42:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:40:03 (3937400): BOINC client no longer exists - exiting
12:40:03 (3937400): timer handler: client dead, exiting
12:45:46 (329258): wrapper (7.7.26015): starting
12:45:46 (329258): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 12:45:46] Arguments: --nthreads 9
[2025-10-12 12:45:46] Threads: 9
[2025-10-12 12:45:46] This job has been restarted, cleaning up previous attempt
[2025-10-12 12:45:46] Checking for CVMFS
[2025-10-12 12:45:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:45:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:45:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:45:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:45:47] 2.13.2.0 831533 129501 278320 151627 0 378 30443560 32935937 39679 16776704 0 275240264 99.650 248962300 20478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:45:47] CVMFS is ok
[2025-10-12 12:45:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:45:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:45:47] Further information can be found at the LHC@home message board.
[2025-10-12 12:45:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:45:47] Checking for apptainer binary...
[2025-10-12 12:45:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:45:47] Running /usr/bin/apptainer --version
[2025-10-12 12:45:48] apptainer version 1.4.3-1.el9
[2025-10-12 12:45:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:45:48] c6-2-11-2.aglt2.org
[2025-10-12 12:45:48] apptainer works
[2025-10-12 12:45:48] Set ATHENA_PROC_NUMBER=9
[2025-10-12 12:45:48] Set ATHENA_CORE_NUMBER=9
[2025-10-12 12:45:48] Starting ATLAS job with PandaID=6839865915
[2025-10-12 12:45:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:19:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:19:14] 2025-10-12 23:18:30,528 | INFO     | monitor loop #1230: job 0:6839865915 is in state 'finished'
[2025-10-12 19:19:14] 2025-10-12 23:18:30,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:19:14] 2025-10-12 23:18:30,798 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 19:19:14] 2025-10-12 23:18:30,851 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2650.4405833333344
[2025-10-12 19:19:14] 2025-10-12 23:18:30,970 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839865915/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:19:14] 2025-10-12 23:18:30,971 | INFO     | extracted standard info from prmon json
[2025-10-12 19:19:14] 2025-10-12 23:18:30,971 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:19:14] 2025-10-12 23:18:30,971 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:19:14] 2025-10-12 23:18:30,995 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:19:14] 2025-10-12 23:18:30,995 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:19:14] 2025-10-12 23:18:31,023 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:19:14] 2025-10-12 23:18:31,036 | INFO     | sum of square deviations: 17557710411.489666
[2025-10-12 19:19:14] 2025-10-12 23:18:31,056 | INFO     | sum of deviations: 60801766947.880165
[2025-10-12 19:19:14] 2025-10-12 23:18:31,056 | INFO     | mean x: 1760299340.5364583
[2025-10-12 19:19:14] 2025-10-12 23:18:31,057 | INFO     | mean y: 2134121.5442708335
[2025-10-12 19:19:14] 2025-10-12 23:18:31,057 | INFO     | -- intersect: -6093723923.350098
[2025-10-12 19:19:14] 2025-10-12 23:18:31,057 | INFO     | intersect: -6093723923.350098
[2025-10-12 19:19:14] 2025-10-12 23:18:31,057 | INFO     | chi2: 3.006895723391739
[2025-10-12 19:19:14] 2025-10-12 23:18:31,058 | INFO     | sum of square deviations: 16880729726.554184
[2025-10-12 19:19:14] 2025-10-12 23:18:31,086 | INFO     | sum of deviations: 89815555605.22958
[2025-10-12 19:19:14] 2025-10-12 23:18:31,087 | INFO     | mean x: 1760299188.0343008
[2025-10-12 19:19:14] 2025-10-12 23:18:31,087 | INFO     | mean y: 2140607.828496042
[2025-10-12 19:19:14] 2025-10-12 23:18:31,087 | INFO     | -- intersect: -9363701519.009949
[2025-10-12 19:19:14] 2025-10-12 23:18:31,087 | INFO     | intersect: -9363701519.009949
[2025-10-12 19:19:14] 2025-10-12 23:18:31,096 | INFO     | chi2: 2.2819580397985715
[2025-10-12 19:19:14] 2025-10-12 23:18:31,096 | INFO     | current chi2=2.2819580397985715 (change=24.10917272433536 %)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,096 | INFO     | right removable region: 378
[2025-10-12 19:19:14] 2025-10-12 23:18:31,097 | INFO     | sum of square deviations: 16880744611.482836
[2025-10-12 19:19:14] 2025-10-12 23:18:31,110 | INFO     | sum of deviations: -12163751398.211086
[2025-10-12 19:19:14] 2025-10-12 23:18:31,110 | INFO     | mean x: 1760299493.0369394
[2025-10-12 19:19:14] 2025-10-12 23:18:31,110 | INFO     | mean y: 2150517.300791557
[2025-10-12 19:19:14] 2025-10-12 23:18:31,110 | INFO     | -- intersect: 1270568819.4847662
[2025-10-12 19:19:14] 2025-10-12 23:18:31,110 | INFO     | intersect: 1270568819.4847662
[2025-10-12 19:19:14] 2025-10-12 23:18:31,111 | INFO     | chi2: 1.0174795949323006
[2025-10-12 19:19:14] 2025-10-12 23:18:31,111 | INFO     | current chi2=1.0174795949323006 (change=66.16179314044862 %)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,111 | INFO     | sum of square deviations: 16221407048.975943
[2025-10-12 19:19:14] 2025-10-12 23:18:31,126 | INFO     | sum of deviations: -30609576165.334225
[2025-10-12 19:19:14] 2025-10-12 23:18:31,136 | INFO     | mean x: 1760299645.5374331
[2025-10-12 19:19:14] 2025-10-12 23:18:31,136 | INFO     | mean y: 2154763.1310160425
[2025-10-12 19:19:14] 2025-10-12 23:18:31,137 | INFO     | -- intersect: 3323816435.95677
[2025-10-12 19:19:14] 2025-10-12 23:18:31,137 | INFO     | intersect: 3323816435.95677
[2025-10-12 19:19:14] 2025-10-12 23:18:31,137 | INFO     | chi2: 0.8535049259755103
[2025-10-12 19:19:14] 2025-10-12 23:18:31,137 | INFO     | current chi2=0.8535049259755103 (change=16.11576976811024 %)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,137 | INFO     | left removable region: 20
[2025-10-12 19:19:14] 2025-10-12 23:18:31,138 | INFO     | sum of square deviations: 14227267699.027885
[2025-10-12 19:19:14] 2025-10-12 23:18:31,151 | INFO     | sum of deviations: -4542779473.837988
[2025-10-12 19:19:14] 2025-10-12 23:18:31,151 | INFO     | mean x: 1760299767.5363128
[2025-10-12 19:19:14] 2025-10-12 23:18:31,151 | INFO     | mean y: 2162636.410614525
[2025-10-12 19:19:14] 2025-10-12 23:18:31,152 | INFO     | -- intersect: 564227947.9610631
[2025-10-12 19:19:14] 2025-10-12 23:18:31,152 | INFO     | intersect: 564227947.9610631
[2025-10-12 19:19:14] 2025-10-12 23:18:31,152 | INFO     | chi2: 0.11433437233423968
[2025-10-12 19:19:14] 2025-10-12 23:18:31,152 | INFO     | -- intersect: 564227947.9610631
[2025-10-12 19:19:14] 2025-10-12 23:18:31,153 | INFO     | current memory leak: -0.32 B/s (using 358 data points, chi2=0.11)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,153 | INFO     | could have reported an average CPU frequency of 2672 MHz (16 samples)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,154 | INFO     | ..............................
[2025-10-12 19:19:14] 2025-10-12 23:18:31,154 | INFO     | . Timing measurements:
[2025-10-12 19:19:14] 2025-10-12 23:18:31,154 | INFO     | . get job = 0 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,161 | INFO     | . initial setup = 1 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,161 | INFO     | . payload setup = 18 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,161 | INFO     | . stage-in = 0 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,162 | INFO     | . payload execution = 23432 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,162 | INFO     | . stage-out = 4 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,162 | INFO     | . log creation = 0 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,162 | INFO     | ..............................
[2025-10-12 19:19:14] 2025-10-12 23:18:31,184 | INFO     | time since job start (23530s) is within the limit (172800.0s)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,593 | INFO     | 
[2025-10-12 19:19:14] 2025-10-12 23:18:31,593 | INFO     | job summary report
[2025-10-12 19:19:14] 2025-10-12 23:18:31,593 | INFO     | --------------------------------------------------
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | PanDA job id: 6839865915
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | task id: 46676269
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | errors: (none)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | pilot state: finished 
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | transexitcode: 0
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | exeerrorcode: 0
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | exeerrordiag: 
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | exitcode: 0
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | exitmsg: OK
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | cpuconsumptiontime: 46613 s
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | nevents: 400
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | neventsw: 0
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | pid: 380923
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | pgrp: 380923
[2025-10-12 19:19:14] 2025-10-12 23:18:31,594 | INFO     | corecount: 9
[2025-10-12 19:19:14] 2025-10-12 23:18:31,595 | INFO     | event service: False
[2025-10-12 19:19:14] 2025-10-12 23:18:31,595 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348885, 12: 2348913, 15: 2349203, 24: 2349231, 23456: 2383879, 23462: 2392877, 23463: 2392933, 23495: 2393127}
[2025-10-12 19:19:14] 2025-10-12 23:18:31,595 | INFO     | --------------------------------------------------
[2025-10-12 19:19:14] 2025-10-12 23:18:31,595 | INFO     | 
[2025-10-12 19:19:14] 2025-10-12 23:18:31,595 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 19:19:14] 2025-10-12 23:18:31,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | job 6839865915 has completed (purged errors)
[2025-10-12 19:19:14] 2025-10-12 23:18:31,748 | INFO     | overall cleanup function is called
[2025-10-12 19:19:14] 2025-10-12 23:18:32,769 | INFO     | --- collectZombieJob: --- 10, [380923]
[2025-10-12 19:19:14] 2025-10-12 23:18:32,769 | INFO     | zombie collector waiting for pid 380923
[2025-10-12 19:19:14] 2025-10-12 23:18:32,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:19:14] 2025-10-12 23:18:32,769 | INFO     | collected zombie processes
[2025-10-12 19:19:14] 2025-10-12 23:18:32,769 | INFO     | will attempt to kill all subprocesses of pid=380923
[2025-10-12 19:19:14] 2025-10-12 23:18:34,472 | INFO     | process IDs to be killed: [380923] (in reverse order)
[2025-10-12 19:19:14] 2025-10-12 23:18:35,029 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:19:14] 2025-10-12 23:18:35,029 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:19:14] 2025-10-12 23:18:35,179 | INFO     | did not find any defunct processes belonging to 380923
[2025-10-12 19:19:14] 2025-10-12 23:18:35,339 | INFO     | did not find any defunct processes belonging to 380923
[2025-10-12 19:19:14] 2025-10-12 23:18:35,340 | INFO     | ready for new job
[2025-10-12 19:19:14] 2025-10-12 23:18:35,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:19:14] 2025-10-12 23:18:35,355 | INFO     | ***************************************
[2025-10-12 19:19:14] 2025-10-12 23:18:35,375 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:19:14] 2025-10-12 23:18:35,375 | INFO     | ***************************************
[2025-10-12 19:19:14] 2025-10-12 23:18:35,375 | INFO     | 
[2025-10-12 19:19:14] 2025-10-12 23:18:35,425 | INFO     | architecture information:
[2025-10-12 19:19:14] 2025-10-12 23:18:35,426 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:19:14] 2025-10-12 23:18:35,532 | INFO     | cat /etc/os-release:
[2025-10-12 19:19:14] NAME="CentOS Linux"
[2025-10-12 19:19:14] VERSION="7 (Core)"
[2025-10-12 19:19:14] ID="centos"
[2025-10-12 19:19:14] ID_LIKE="rhel fedora"
[2025-10-12 19:19:14] VERSION_ID="7"
[2025-10-12 19:19:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:19:14] ANSI_COLOR="0;31"
[2025-10-12 19:19:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:19:14] HOME_URL="https://www.centos.org/"
[2025-10-12 19:19:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:19:14] 
[2025-10-12 19:19:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:19:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:19:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:19:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:19:14] 
[2025-10-12 19:19:14] 2025-10-12 23:18:35,533 | INFO     | ***************************************
[2025-10-12 19:19:14] 2025-10-12 23:18:36,050 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 19:19:14] 2025-10-12 23:18:36,146 | INFO     | sufficient remaining disk space (93846503424 B)
[2025-10-12 19:19:14] 2025-10-12 23:18:36,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:19:14] 2025-10-12 23:18:36,147 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:19:14] 2025-10-12 23:18:36,147 | INFO     | update_server=False
[2025-10-12 19:19:14] 2025-10-12 23:18:36,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:19:14] 2025-10-12 23:18:36,607 | INFO     | all payload control threads have been joined
[2025-10-12 19:19:14] 2025-10-12 23:18:36,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:19:14] 2025-10-12 23:18:36,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:19:14] 2025-10-12 23:18:36,664 | INFO     | aborting loop
[2025-10-12 19:19:14] 2025-10-12 23:18:36,692 | INFO     | all job control threads have been joined
[2025-10-12 19:19:14] 2025-10-12 23:18:36,796 | INFO     | all data control threads have been joined
[2025-10-12 19:19:14] 2025-10-12 23:18:36,857 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:19:14] 2025-10-12 23:18:37,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:19:14] 2025-10-12 23:18:37,153 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:37,601 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:37,613 | INFO     | [payload] control thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:37,637 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:37,671 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:37,698 | INFO     | [job] control thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:37,802 | INFO     | [data] control thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:37,824 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:38,114 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:38,115 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:38,150 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:38,211 | INFO     | [job] validate thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:38,269 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:38,756 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:38,864 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:18:41,161 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:19:14] 2025-10-12 23:19:04,628 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:19:14] 2025-10-12 23:19:06,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139970008713024)>', '<ExcThread(monitor, started 139969226077952)>']
[2025-10-12 19:19:14] 2025-10-12 23:19:07,034 | INFO     | PID=348250 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 19:19:14] 2025-10-12 23:19:07,034 | INFO     | .. there are 45 such processes running
[2025-10-12 19:19:14] 2025-10-12 23:19:07,035 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:19:14] 2025-10-12 23:19:07,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:19:14] 2025-10-12 23:19:07,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:19:14] 2025-10-12 23:19:07,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:19:14] 2025-10-12 23:19:07,036 | INFO     | [monitor] control thread has ended
[2025-10-12 19:19:14] 2025-10-12 23:19:11,070 | INFO     | all workflow threads have been joined
[2025-10-12 19:19:14] 2025-10-12 23:19:11,070 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:19:14] 2025-10-12 23:19:11,071 | INFO     | traces error code: 0
[2025-10-12 19:19:14] 2025-10-12 23:19:11,071 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:19:14] 2025-10-12 23:19:12,339 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:19:14] 2025-10-12 23:19:12,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:19:14] 2025-10-12 23:19:12,406 [wrapper] pilotpid: 348250
[2025-10-12 19:19:14] 2025-10-12 23:19:12,421 [wrapper] Pilot exit status: 0
[2025-10-12 19:19:14] 2025-10-12 23:19:12,573 [wrapper] pandaids: 6839865915 6839865915
[2025-10-12 19:19:14] 2025-10-12 23:19:13,159 [wrapper] cleanup supervisor_pilot 1967385 348251
[2025-10-12 19:19:14] 2025-10-12 23:19:13,199 [wrapper] Test setup, not cleaning
[2025-10-12 19:19:14] 2025-10-12 23:19:13,230 [wrapper] apfmon messages muted
[2025-10-12 19:19:14] 2025-10-12 23:19:13,254 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:19:14] 2025-10-12 23:19:13,293 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:19:14]  *** Error codes and diagnostics ***
[2025-10-12 19:19:14]     "exeErrorCode": 0,
[2025-10-12 19:19:14]     "exeErrorDiag": "",
[2025-10-12 19:19:14]     "pilotErrorCode": 0,
[2025-10-12 19:19:14]     "pilotErrorDiag": "",
[2025-10-12 19:19:14]  *** Listing of results directory ***
[2025-10-12 19:19:14] total 626040
[2025-10-12 19:19:14] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 05:51 pilot3.tar.gz
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 06:02 queuedata.json
[2025-10-12 19:19:14] -rwx------. 1 boincer umatlas     36292 Oct 12 06:03 runpilot2-wrapper.sh
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas       100 Oct 12 10:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:19:14] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 10:42 run_atlas
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas       105 Oct 12 10:42 job.xml
[2025-10-12 19:19:14] -rw-r--r--. 3 boincer umatlas 220316495 Oct 12 10:42 EVNT.46676267._003600.pool.root.1
[2025-10-12 19:19:14] -rw-r--r--. 3 boincer umatlas 220316495 Oct 12 10:42 ATLAS.root_0
[2025-10-12 19:19:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:42 start_atlas.sh
[2025-10-12 19:19:14] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 10:42 shared
[2025-10-12 19:19:14] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 10:42 input.tar.gz
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas         0 Oct 12 10:42 boinc_lockfile
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 12:45 pandaJob.out
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas    975528 Oct 12 12:46 agis_schedconf.cvmfs.json
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas      6857 Oct 12 19:13 init_data.xml
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas 190039535 Oct 12 19:16 HITS.46676269._075650.pool.root.1
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas       531 Oct 12 19:16 boinc_task_state.xml
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas      1053 Oct 12 19:17 memory_monitor_summary.json
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas    570592 Oct 12 19:17 log.46676269._075650.job.log.tgz.1
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas      7837 Oct 12 19:18 heartbeat.json
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas        96 Oct 12 19:19 pilot_heartbeat.json
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 19:19 boinc_mmap_file
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas        28 Oct 12 19:19 wrapper_checkpoint.txt
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas      4823 Oct 12 19:19 pilotlog.txt
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas   2670028 Oct 12 19:19 log.46676269._075650.job.log.1
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas       357 Oct 12 19:19 output.list
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas       620 Oct 12 19:19 runtime_log
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas   3256320 Oct 12 19:19 result.tar.gz
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas      8794 Oct 12 19:19 runtime_log.err
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas       784 Oct 12 19:19 27qLDmC67R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmobTMDmdkHgFo.diag
[2025-10-12 19:19:14] -rw-r--r--. 1 boincer umatlas     23514 Oct 12 19:19 stderr.txt
[2025-10-12 19:19:14] HITS file was successfully produced:
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas 190039535 Oct 12 19:16 shared/HITS.pool.root.1
[2025-10-12 19:19:14]  *** Contents of shared directory: ***
[2025-10-12 19:19:14] total 404508
[2025-10-12 19:19:14] -rw-r--r--. 3 boincer umatlas 220316495 Oct 12 10:42 ATLAS.root_0
[2025-10-12 19:19:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:42 start_atlas.sh
[2025-10-12 19:19:14] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 10:42 input.tar.gz
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas 190039535 Oct 12 19:16 HITS.pool.root.1
[2025-10-12 19:19:14] -rw-------. 1 boincer umatlas   3256320 Oct 12 19:19 result.tar.gz
19:19:15 (329258): run_atlas exited; CPU time 47931.198473
19:19:15 (329258): called boinc_finish(0)

</stderr_txt>
]]>

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