Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:37:53 (542062): wrapper (7.7.26015): starting
06:37:53 (542062): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 06:37:53] Arguments: --nthreads 12
[2025-10-13 06:37:53] Threads: 12
[2025-10-13 06:37:53] Checking for CVMFS
[2025-10-13 06:37:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:37:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:37:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:37:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:37:54] 2.13.2.0 9461 16801 97296 151649 1 188 7339260 46080001 922 130560 0 39297626 99.996 606864 14684 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 06:37:54] CVMFS is ok
[2025-10-13 06:37:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:37:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:37:54] Further information can be found at the LHC@home message board.
[2025-10-13 06:37:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:37:54] Checking for apptainer binary...
[2025-10-13 06:37:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:37:54] Running /usr/bin/apptainer --version
[2025-10-13 06:37:54] apptainer version 1.4.2-1.el9
[2025-10-13 06:37:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:37:54] minis01.farm.particle.cz
[2025-10-13 06:37:54] apptainer works
[2025-10-13 06:37:54] Set ATHENA_PROC_NUMBER=12
[2025-10-13 06:37:54] Set ATHENA_CORE_NUMBER=12
[2025-10-13 06:37:54] Starting ATLAS job with PandaID=6839385228
[2025-10-13 06:37:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:29:35]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:29:35] 2025-10-13 05:28:56,782 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 07:29:35] 2025-10-13 05:28:56,782 | INFO     | summary of transferred files:
[2025-10-13 07:29:35] 2025-10-13 05:28:56,782 | INFO     |  -- lfn=log.46676269._070472.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 07:29:35] 2025-10-13 05:28:56,782 | INFO     | stage-out finished correctly
[2025-10-13 07:29:35] 2025-10-13 05:28:57,662 | INFO     | time since job start (3054s) is within the limit (172800.0s)
[2025-10-13 07:29:35] 2025-10-13 05:28:58,723 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 07:29:35] 2025-10-13 05:28:58,802 | INFO     | job 6839385228 has state=finished
[2025-10-13 07:29:35] 2025-10-13 05:28:58,802 | INFO     | preparing for final server update for job 6839385228 in state='finished'
[2025-10-13 07:29:35] 2025-10-13 05:28:58,803 | INFO     | this job has now completed (state=finished)
[2025-10-13 07:29:35] 2025-10-13 05:28:58,803 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 07:29:35] 2025-10-13 05:28:58,803 | INFO     | log transfer has been attempted: DONE
[2025-10-13 07:29:35] 2025-10-13 05:28:58,803 | INFO     | job 6839385228 has finished - writing final server update
[2025-10-13 07:29:35] 2025-10-13 05:28:58,803 | INFO     | total number of processed events: 400 (read)
[2025-10-13 07:29:35] 2025-10-13 05:28:58,804 | INFO     | executing command: lscpu
[2025-10-13 07:29:35] 2025-10-13 05:28:58,837 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 07:29:35] 2025-10-13 05:28:58,948 | INFO     | PID=546195 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 07:29:35] 2025-10-13 05:28:58,948 | INFO     | .. there are 2 such processes running
[2025-10-13 07:29:35] 2025-10-13 05:28:59,712 | WARNING  | process 552893 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 07:29:35] 2025-10-13 05:28:59,712 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6839385228/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:29:35] 2025-10-13 05:28:59,713 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6839385228/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:29:35] 2025-10-13 05:28:59,713 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 07:29:35] 2025-10-13 05:28:59,713 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 07:29:35] 2025-10-13 05:28:59,714 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4519914 B
[2025-10-13 07:29:35] 2025-10-13 05:28:59,714 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15785 B
[2025-10-13 07:29:35] 2025-10-13 05:28:59,714 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-13 07:29:35] 2025-10-13 05:28:59,949 | INFO     | time since job start (3056s) is within the limit (172800.0s)
[2025-10-13 07:29:35] 2025-10-13 05:29:01,954 | INFO     | time since job start (3058s) is within the limit (172800.0s)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,449 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 07:29:35] 2025-10-13 05:29:02,460 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2767.9981562499997
[2025-10-13 07:29:35] 2025-10-13 05:29:02,462 | INFO     | sufficient remaining disk space (65442676736 B)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,463 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,465 | INFO     | size of work directory /var/lib/boinc/slots/3/PanDA_Pilot-6839385228: 4806682 B (within 2537553920 B limit)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,465 | INFO     | pfn file=/var/lib/boinc/slots/3/PanDA_Pilot-6839385228/HITS.46676269._070472.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,465 | INFO     | total size of present files: 0 B (workdir size: 4806682 B)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,465 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/3/PanDA_Pilot-6839385228/HITS.46676269._070472.pool.root.1 since it does not exist
[2025-10-13 07:29:35] 2025-10-13 05:29:02,469 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6839385228/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,470 | INFO     | extracted standard info from prmon json
[2025-10-13 07:29:35] 2025-10-13 05:29:02,470 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:29:35] 2025-10-13 05:29:02,470 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:29:35] 2025-10-13 05:29:02,471 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:29:35] 2025-10-13 05:29:02,471 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:29:35] 2025-10-13 05:29:02,472 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:29:35] 2025-10-13 05:29:02,473 | INFO     | sum of square deviations: 24640462.0
[2025-10-13 07:29:35] 2025-10-13 05:29:02,473 | INFO     | sum of deviations: -1862347995.0
[2025-10-13 07:29:35] 2025-10-13 05:29:02,473 | INFO     | mean x: 1760331893.0
[2025-10-13 07:29:35] 2025-10-13 05:29:02,473 | INFO     | mean y: 2864983.7209302327
[2025-10-13 07:29:35] 2025-10-13 05:29:02,473 | INFO     | -- intersect: 133050312367.74744
[2025-10-13 07:29:35] 2025-10-13 05:29:02,474 | INFO     | intersect: 133050312367.74744
[2025-10-13 07:29:35] 2025-10-13 05:29:02,474 | INFO     | chi2: 0.04863562547458637
[2025-10-13 07:29:35] 2025-10-13 05:29:02,474 | INFO     | -- intersect: 133050312367.74744
[2025-10-13 07:29:35] 2025-10-13 05:29:02,474 | INFO     | current memory leak: -75.58 B/s (using 43 data points, chi2=0.05)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,474 | INFO     | could have reported an average CPU frequency of 2756 MHz (5 samples)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,475 | INFO     | ..............................
[2025-10-13 07:29:35] 2025-10-13 05:29:02,475 | INFO     | . Timing measurements:
[2025-10-13 07:29:35] 2025-10-13 05:29:02,475 | INFO     | . get job = 0 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,475 | INFO     | . initial setup = 1 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,475 | INFO     | . payload setup = 5 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,475 | INFO     | . stage-in = 0 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,475 | INFO     | . payload execution = 3029 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,476 | INFO     | . stage-out = 0 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,476 | INFO     | . log creation = 0 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,476 | INFO     | ..............................
[2025-10-13 07:29:35] 2025-10-13 05:29:02,549 | INFO     | 
[2025-10-13 07:29:35] 2025-10-13 05:29:02,550 | INFO     | job summary report
[2025-10-13 07:29:35] 2025-10-13 05:29:02,550 | INFO     | --------------------------------------------------
[2025-10-13 07:29:35] 2025-10-13 05:29:02,550 | INFO     | PanDA job id: 6839385228
[2025-10-13 07:29:35] 2025-10-13 05:29:02,550 | INFO     | task id: 46676269
[2025-10-13 07:29:35] 2025-10-13 05:29:02,550 | INFO     | errors: (none)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,550 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:29:35] 2025-10-13 05:29:02,551 | INFO     | pilot state: finished 
[2025-10-13 07:29:35] 2025-10-13 05:29:02,551 | INFO     | transexitcode: 0
[2025-10-13 07:29:35] 2025-10-13 05:29:02,551 | INFO     | exeerrorcode: 0
[2025-10-13 07:29:35] 2025-10-13 05:29:02,551 | INFO     | exeerrordiag: 
[2025-10-13 07:29:35] 2025-10-13 05:29:02,551 | INFO     | exitcode: 0
[2025-10-13 07:29:35] 2025-10-13 05:29:02,552 | INFO     | exitmsg: OK
[2025-10-13 07:29:35] 2025-10-13 05:29:02,552 | INFO     | cpuconsumptiontime: 33386 s
[2025-10-13 07:29:35] 2025-10-13 05:29:02,552 | INFO     | nevents: 400
[2025-10-13 07:29:35] 2025-10-13 05:29:02,552 | INFO     | neventsw: 0
[2025-10-13 07:29:35] 2025-10-13 05:29:02,552 | INFO     | pid: 552893
[2025-10-13 07:29:35] 2025-10-13 05:29:02,552 | INFO     | pgrp: 552893
[2025-10-13 07:29:35] 2025-10-13 05:29:02,553 | INFO     | corecount: 12
[2025-10-13 07:29:35] 2025-10-13 05:29:02,553 | INFO     | event service: False
[2025-10-13 07:29:35] 2025-10-13 05:29:02,553 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 3038: 2383567, 3040: 2383567, 3044: 2383821}
[2025-10-13 07:29:35] 2025-10-13 05:29:02,553 | INFO     | --------------------------------------------------
[2025-10-13 07:29:35] 2025-10-13 05:29:02,553 | INFO     | 
[2025-10-13 07:29:35] 2025-10-13 05:29:02,554 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-13 07:29:35] 2025-10-13 05:29:02,573 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,574 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,574 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,574 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,574 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:29:35] 2025-10-13 05:29:02,578 | INFO     | job 6839385228 has completed (purged errors)
[2025-10-13 07:29:35] 2025-10-13 05:29:02,578 | INFO     | overall cleanup function is called
[2025-10-13 07:29:35] 2025-10-13 05:29:02,698 | INFO     | number of running child processes to parent process 552893: 1
[2025-10-13 07:29:35] 2025-10-13 05:29:02,698 | INFO     | maximum number of monitored processes: 6
[2025-10-13 07:29:35] 2025-10-13 05:29:02,698 | INFO     | aborting job monitoring since job object (job id=6839385228) has expired
[2025-10-13 07:29:35] 2025-10-13 05:29:03,588 | INFO     | --- collectZombieJob: --- 10, [552893]
[2025-10-13 07:29:35] 2025-10-13 05:29:03,588 | INFO     | zombie collector waiting for pid 552893
[2025-10-13 07:29:35] 2025-10-13 05:29:03,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:29:35] 2025-10-13 05:29:03,588 | INFO     | collected zombie processes
[2025-10-13 07:29:35] 2025-10-13 05:29:03,589 | INFO     | will attempt to kill all subprocesses of pid=552893
[2025-10-13 07:29:35] 2025-10-13 05:29:03,736 | INFO     | process IDs to be killed: [552893] (in reverse order)
[2025-10-13 07:29:35] 2025-10-13 05:29:03,791 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:29:35] 2025-10-13 05:29:03,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:29:35] 2025-10-13 05:29:03,796 | INFO     | did not find any defunct processes belonging to 552893
[2025-10-13 07:29:35] 2025-10-13 05:29:03,800 | INFO     | did not find any defunct processes belonging to 552893
[2025-10-13 07:29:35] 2025-10-13 05:29:03,800 | INFO     | ready for new job
[2025-10-13 07:29:35] 2025-10-13 05:29:03,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:29:35] 2025-10-13 05:29:03,802 | INFO     | ***************************************
[2025-10-13 07:29:35] 2025-10-13 05:29:03,802 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:29:35] 2025-10-13 05:29:03,802 | INFO     | ***************************************
[2025-10-13 07:29:35] 2025-10-13 05:29:03,802 | INFO     | 
[2025-10-13 07:29:35] 2025-10-13 05:29:03,803 | INFO     | architecture information:
[2025-10-13 07:29:35] 2025-10-13 05:29:03,804 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:29:35] 2025-10-13 05:29:03,817 | INFO     | cat /etc/os-release:
[2025-10-13 07:29:35] NAME="CentOS Linux"
[2025-10-13 07:29:35] VERSION="7 (Core)"
[2025-10-13 07:29:35] ID="centos"
[2025-10-13 07:29:35] ID_LIKE="rhel fedora"
[2025-10-13 07:29:35] VERSION_ID="7"
[2025-10-13 07:29:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:29:35] ANSI_COLOR="0;31"
[2025-10-13 07:29:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:29:35] HOME_URL="https://www.centos.org/"
[2025-10-13 07:29:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:29:35] 
[2025-10-13 07:29:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:29:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:29:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:29:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:29:35] 
[2025-10-13 07:29:35] 2025-10-13 05:29:03,817 | INFO     | ***************************************
[2025-10-13 07:29:35] 2025-10-13 05:29:04,320 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-13 07:29:35] 2025-10-13 05:29:04,335 | INFO     | sufficient remaining disk space (65447919616 B)
[2025-10-13 07:29:35] 2025-10-13 05:29:04,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:29:35] 2025-10-13 05:29:04,336 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:29:35] 2025-10-13 05:29:04,336 | INFO     | update_server=False
[2025-10-13 07:29:35] 2025-10-13 05:29:04,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:29:35] 2025-10-13 05:29:04,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:29:35] 2025-10-13 05:29:04,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:29:35] 2025-10-13 05:29:04,337 | INFO     | aborting loop
[2025-10-13 07:29:35] 2025-10-13 05:29:04,342 | INFO     | all data control threads have been joined
[2025-10-13 07:29:35] 2025-10-13 05:29:04,586 | INFO     | all job control threads have been joined
[2025-10-13 07:29:35] 2025-10-13 05:29:04,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:29:35] 2025-10-13 05:29:04,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:29:35] 2025-10-13 05:29:05,214 | INFO     | all payload control threads have been joined
[2025-10-13 07:29:35] 2025-10-13 05:29:05,341 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:05,342 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:05,342 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:05,348 | INFO     | [data] control thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:05,527 | INFO     | [job] validate thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:05,591 | INFO     | [job] control thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:05,749 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:05,959 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:06,033 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:06,047 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:06,219 | INFO     | [payload] control thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:06,315 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:06,727 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:06,794 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:06,875 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:07,081 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:29:35] 2025-10-13 05:29:08,813 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:29:35] 2025-10-13 05:29:09,493 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140150787045184)>', '<ExcThread(monitor, started 140150445156096)>']
[2025-10-13 07:29:35] 2025-10-13 05:29:14,518 | INFO     | all workflow threads have been joined
[2025-10-13 07:29:35] 2025-10-13 05:29:14,518 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:29:35] 2025-10-13 05:29:14,519 | INFO     | traces error code: 0
[2025-10-13 07:29:35] 2025-10-13 05:29:14,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:29:35] 2025-10-13 05:29:35,222 | INFO     | PID=546195 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 07:29:35] 2025-10-13 05:29:35,222 | INFO     | .. there are 2 such processes running
[2025-10-13 07:29:35] 2025-10-13 05:29:35,223 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:29:35] 2025-10-13 05:29:35,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:29:35] 2025-10-13 05:29:35,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:29:35] 2025-10-13 05:29:35,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:29:35] 2025-10-13 05:29:35,223 | INFO     | [monitor] control thread has ended
[2025-10-13 07:29:35] 2025-10-13 05:29:35,334 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:29:35] 2025-10-13 05:29:35,337 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:29:35] 2025-10-13 05:29:35,339 [wrapper] pilotpid: 546195
[2025-10-13 07:29:35] 2025-10-13 05:29:35,342 [wrapper] Pilot exit status: 0
[2025-10-13 07:29:35] 2025-10-13 05:29:35,352 [wrapper] pandaids: 6839385228
[2025-10-13 07:29:35] 2025-10-13 05:29:35,389 [wrapper] cleanup supervisor_pilot  604609 546196
[2025-10-13 07:29:35] 2025-10-13 05:29:35,392 [wrapper] Test setup, not cleaning
[2025-10-13 07:29:35] 2025-10-13 05:29:35,395 [wrapper] apfmon messages muted
[2025-10-13 07:29:35] 2025-10-13 05:29:35,397 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:29:35] 2025-10-13 05:29:35,400 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:29:35]  *** Error codes and diagnostics ***
[2025-10-13 07:29:35]     "exeErrorCode": 0,
[2025-10-13 07:29:35]     "exeErrorDiag": "",
[2025-10-13 07:29:35]     "pilotErrorCode": 0,
[2025-10-13 07:29:35]     "pilotErrorDiag": "",
[2025-10-13 07:29:35]  *** Listing of results directory ***
[2025-10-13 07:29:35] total 413140
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc    557409 Oct 12 06:04 pilot3.tar.gz
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc      5112 Oct 12 06:06 queuedata.json
[2025-10-13 07:29:35] -rwx------. 1 boinc boinc     36292 Oct 12 06:07 runpilot2-wrapper.sh
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc       100 Oct 13 06:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:29:35] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 06:37 run_atlas
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc       105 Oct 13 06:37 job.xml
[2025-10-13 07:29:35] -rw-r--r--. 2 boinc boinc 224495475 Oct 13 06:37 EVNT.46676267._003231.pool.root.1
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc      6518 Oct 13 06:37 init_data.xml
[2025-10-13 07:29:35] -rw-r--r--. 2 boinc boinc     15120 Oct 13 06:37 start_atlas.sh
[2025-10-13 07:29:35] drwxrwx--x. 2 boinc boinc      4096 Oct 13 06:37 shared
[2025-10-13 07:29:35] -rw-r--r--. 2 boinc boinc    569681 Oct 13 06:37 input.tar.gz
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc         0 Oct 13 06:37 boinc_lockfile
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc      2550 Oct 13 06:37 pandaJob.out
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc    974365 Oct 13 06:38 agis_schedconf.cvmfs.json
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc   1560580 Oct 13 06:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:29:35] drwx------. 5 boinc boinc      4096 Oct 13 06:38 pilot3
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc 192982875 Oct 13 07:28 HITS.46676269._070472.pool.root.1
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc       529 Oct 13 07:28 boinc_task_state.xml
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc        95 Oct 13 07:28 pilot_heartbeat.json
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc      1013 Oct 13 07:28 memory_monitor_summary.json
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc    371902 Oct 13 07:28 log.46676269._070472.job.log.tgz.1
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc      7777 Oct 13 07:29 heartbeat.json
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc      8192 Oct 13 07:29 boinc_mmap_file
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc        27 Oct 13 07:29 wrapper_checkpoint.txt
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc       821 Oct 13 07:29 pilotlog.txt
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc    472914 Oct 13 07:29 log.46676269._070472.job.log.1
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc       357 Oct 13 07:29 output.list
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc       620 Oct 13 07:29 runtime_log
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc    860160 Oct 13 07:29 result.tar.gz
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc      8750 Oct 13 07:29 runtime_log.err
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc       663 Oct 13 07:29 8fFODmHY2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvXiNDmpIT1Uo.diag
[2025-10-13 07:29:35] -rw-r--r--. 1 boinc boinc     22490 Oct 13 07:29 stderr.txt
[2025-10-13 07:29:35] HITS file was successfully produced:
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc 192982875 Oct 13 07:28 shared/HITS.pool.root.1
[2025-10-13 07:29:35]  *** Contents of shared directory: ***
[2025-10-13 07:29:35] total 409116
[2025-10-13 07:29:35] -rw-r--r--. 2 boinc boinc 224495475 Oct 13 06:37 ATLAS.root_0
[2025-10-13 07:29:35] -rw-r--r--. 2 boinc boinc     15120 Oct 13 06:37 start_atlas.sh
[2025-10-13 07:29:35] -rw-r--r--. 2 boinc boinc    569681 Oct 13 06:37 input.tar.gz
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc 192982875 Oct 13 07:28 HITS.pool.root.1
[2025-10-13 07:29:35] -rw-------. 1 boinc boinc    860160 Oct 13 07:29 result.tar.gz
07:29:36 (542062): run_atlas exited; CPU time 33403.626103
07:29:36 (542062): called boinc_finish(0)

</stderr_txt>
]]>

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