Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:58:54 (2835240): wrapper (7.7.26015): starting
07:58:54 (2835240): wrapper: running run_atlas (--nthreads 10)
[2025-10-12 07:58:54] Arguments: --nthreads 10
[2025-10-12 07:58:54] Threads: 10
[2025-10-12 07:58:54] Checking for CVMFS
[2025-10-12 07:58:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:58:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:58:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:58:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:58:55] 2.13.1.0 7481 77309 115364 151619 0 750 33815840 40960000 29688 16776704 0 446236950 99.779 253535842 45796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 07:58:55] CVMFS is ok
[2025-10-12 07:58:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:58:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:58:55] Further information can be found at the LHC@home message board.
[2025-10-12 07:58:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:58:55] Checking for apptainer binary...
[2025-10-12 07:58:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:58:55] Running /usr/bin/apptainer --version
[2025-10-12 07:58:55] apptainer version 1.4.3-1.el9
[2025-10-12 07:58:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:58:56] c-208-38.aglt2.org
[2025-10-12 07:58:56] apptainer works
[2025-10-12 07:58:56] Set ATHENA_PROC_NUMBER=10
[2025-10-12 07:58:56] Set ATHENA_CORE_NUMBER=10
[2025-10-12 07:58:56] Starting ATLAS job with PandaID=6839658319
[2025-10-12 07:58:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:08:51]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:08:51] 2025-10-12 13:07:35,479 | INFO     | job 6839658319 has finished - writing final server update
[2025-10-12 09:08:51] 2025-10-12 13:07:35,479 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:08:51] 2025-10-12 13:07:35,488 | INFO     | executing command: lscpu
[2025-10-12 09:08:51] 2025-10-12 13:07:35,824 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:08:51] 2025-10-12 13:07:35,923 | INFO     | time since job start (4079s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:35,995 | WARNING  | process 2849213 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 09:08:51] 2025-10-12 13:07:35,995 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839658319/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:08:51] 2025-10-12 13:07:35,996 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3748807 B
[2025-10-12 09:08:51] 2025-10-12 13:07:35,996 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15546 B
[2025-10-12 09:08:51] 2025-10-12 13:07:35,996 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 09:08:51] 2025-10-12 13:07:37,950 | INFO     | time since job start (4081s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:39,958 | INFO     | time since job start (4083s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:41,967 | INFO     | time since job start (4085s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:43,977 | INFO     | time since job start (4087s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:45,984 | INFO     | time since job start (4089s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:47,994 | INFO     | time since job start (4091s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:50,000 | INFO     | time since job start (4094s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:52,007 | INFO     | time since job start (4096s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:54,018 | INFO     | time since job start (4098s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:56,039 | INFO     | time since job start (4100s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:07:58,100 | INFO     | PID=2840615 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:08:51] 2025-10-12 13:07:58,100 | INFO     | .. there are 23 such processes running
[2025-10-12 09:08:51] 2025-10-12 13:07:59,100 | INFO     | time since job start (4103s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:08:01,107 | INFO     | time since job start (4105s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:08:03,114 | INFO     | time since job start (4107s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:08:05,121 | INFO     | time since job start (4109s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:08:07,128 | INFO     | time since job start (4111s) is within the limit (172800.0s)
[2025-10-12 09:08:51] 2025-10-12 13:08:07,967 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 09:08:51] 2025-10-12 13:08:07,976 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3732.9105859375018
[2025-10-12 09:08:51] 2025-10-12 13:08:07,990 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839658319/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:08:51] 2025-10-12 13:08:07,991 | INFO     | extracted standard info from prmon json
[2025-10-12 09:08:51] 2025-10-12 13:08:07,991 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:08:51] 2025-10-12 13:08:07,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:08:51] 2025-10-12 13:08:07,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:08:51] 2025-10-12 13:08:07,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:08:51] 2025-10-12 13:08:07,992 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:08:51] 2025-10-12 13:08:07,992 | INFO     | sum of square deviations: 60486228.4827586
[2025-10-12 09:08:51] 2025-10-12 13:08:07,992 | INFO     | sum of deviations: 7360417908.862071
[2025-10-12 09:08:51] 2025-10-12 13:08:07,992 | INFO     | mean x: 1760272527.5172415
[2025-10-12 09:08:51] 2025-10-12 13:08:07,992 | INFO     | mean y: 2514345.6379310344
[2025-10-12 09:08:51] 2025-10-12 13:08:07,992 | INFO     | -- intersect: -214200648275.23816
[2025-10-12 09:08:51] 2025-10-12 13:08:07,992 | INFO     | intersect: -214200648275.23816
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | chi2: 0.2225185040423711
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | -- intersect: -214200648275.23816
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | current memory leak: 121.69 B/s (using 58 data points, chi2=0.22)
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | could have reported an average CPU frequency of 3752 MHz (6 samples)
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | ..............................
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . Timing measurements:
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . get job = 0 s
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . initial setup = 4 s
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . payload setup = 29 s
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . stage-in = 0 s
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . payload execution = 3980 s
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . stage-out = 1 s
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | . log creation = 0 s
[2025-10-12 09:08:51] 2025-10-12 13:08:07,993 | INFO     | ..............................
[2025-10-12 09:08:51] 2025-10-12 13:08:08,038 | INFO     | sufficient remaining disk space (170782621696 B)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,044 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,048 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6839658319: 4043726 B (within 2537553920 B limit)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,048 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6839658319/HITS.46676269._073476.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,048 | INFO     | total size of present files: 0 B (workdir size: 4043726 B)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,048 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6839658319/HITS.46676269._073476.pool.root.1 since it does not exist
[2025-10-12 09:08:51] 2025-10-12 13:08:08,136 | INFO     | 
[2025-10-12 09:08:51] 2025-10-12 13:08:08,151 | INFO     | job summary report
[2025-10-12 09:08:51] 2025-10-12 13:08:08,159 | INFO     | --------------------------------------------------
[2025-10-12 09:08:51] 2025-10-12 13:08:08,159 | INFO     | PanDA job id: 6839658319
[2025-10-12 09:08:51] 2025-10-12 13:08:08,159 | INFO     | task id: 46676269
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | errors: (none)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | pilot state: finished 
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | transexitcode: 0
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | exeerrorcode: 0
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | exeerrordiag: 
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | exitcode: 0
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | exitmsg: OK
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | cpuconsumptiontime: 24130 s
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | nevents: 400
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | neventsw: 0
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | pid: 2849213
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | pgrp: 2849213
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | corecount: 10
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | event service: False
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | sizes: {0: 2348685, 1: 2348884, 12: 2348884, 23: 2348912, 26: 2349202, 33: 2349230, 4014: 2375344, 4015: 2375343, 4018: 2384397, 4019: 2384453, 4052: 2384647}
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | --------------------------------------------------
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | 
[2025-10-12 09:08:51] 2025-10-12 13:08:08,160 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | job 6839658319 has completed (purged errors)
[2025-10-12 09:08:51] 2025-10-12 13:08:08,229 | INFO     | overall cleanup function is called
[2025-10-12 09:08:51] 2025-10-12 13:08:08,810 | INFO     | number of running child processes to parent process 2849213: 1
[2025-10-12 09:08:51] 2025-10-12 13:08:08,811 | INFO     | maximum number of monitored processes: 6
[2025-10-12 09:08:51] 2025-10-12 13:08:08,811 | INFO     | aborting job monitoring since job object (job id=6839658319) has expired
[2025-10-12 09:08:51] 2025-10-12 13:08:09,276 | INFO     | --- collectZombieJob: --- 10, [2849213]
[2025-10-12 09:08:51] 2025-10-12 13:08:09,277 | INFO     | zombie collector waiting for pid 2849213
[2025-10-12 09:08:51] 2025-10-12 13:08:09,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:08:51] 2025-10-12 13:08:09,277 | INFO     | collected zombie processes
[2025-10-12 09:08:51] 2025-10-12 13:08:09,277 | INFO     | will attempt to kill all subprocesses of pid=2849213
[2025-10-12 09:08:51] 2025-10-12 13:08:10,211 | INFO     | process IDs to be killed: [2849213] (in reverse order)
[2025-10-12 09:08:51] 2025-10-12 13:08:10,696 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:08:51] 2025-10-12 13:08:10,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:08:51] 2025-10-12 13:08:10,861 | INFO     | did not find any defunct processes belonging to 2849213
[2025-10-12 09:08:51] 2025-10-12 13:08:11,045 | INFO     | did not find any defunct processes belonging to 2849213
[2025-10-12 09:08:51] 2025-10-12 13:08:11,045 | INFO     | ready for new job
[2025-10-12 09:08:51] 2025-10-12 13:08:11,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:08:51] 2025-10-12 13:08:11,046 | INFO     | ***************************************
[2025-10-12 09:08:51] 2025-10-12 13:08:11,046 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:08:51] 2025-10-12 13:08:11,046 | INFO     | ***************************************
[2025-10-12 09:08:51] 2025-10-12 13:08:11,046 | INFO     | 
[2025-10-12 09:08:51] 2025-10-12 13:08:11,109 | INFO     | architecture information:
[2025-10-12 09:08:51] 2025-10-12 13:08:11,125 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:08:51] 2025-10-12 13:08:11,170 | INFO     | cat /etc/os-release:
[2025-10-12 09:08:51] NAME="CentOS Linux"
[2025-10-12 09:08:51] VERSION="7 (Core)"
[2025-10-12 09:08:51] ID="centos"
[2025-10-12 09:08:51] ID_LIKE="rhel fedora"
[2025-10-12 09:08:51] VERSION_ID="7"
[2025-10-12 09:08:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:08:51] ANSI_COLOR="0;31"
[2025-10-12 09:08:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:08:51] HOME_URL="https://www.centos.org/"
[2025-10-12 09:08:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:08:51] 
[2025-10-12 09:08:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:08:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:08:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:08:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:08:51] 
[2025-10-12 09:08:51] 2025-10-12 13:08:11,170 | INFO     | ***************************************
[2025-10-12 09:08:51] 2025-10-12 13:08:11,674 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 09:08:51] 2025-10-12 13:08:11,765 | INFO     | sufficient remaining disk space (170785767424 B)
[2025-10-12 09:08:51] 2025-10-12 13:08:11,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:08:51] 2025-10-12 13:08:11,766 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:08:51] 2025-10-12 13:08:11,766 | INFO     | update_server=False
[2025-10-12 09:08:51] 2025-10-12 13:08:11,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:08:51] 2025-10-12 13:08:11,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:08:51] 2025-10-12 13:08:12,072 | INFO     | all payload control threads have been joined
[2025-10-12 09:08:51] 2025-10-12 13:08:12,275 | INFO     | all data control threads have been joined
[2025-10-12 09:08:51] 2025-10-12 13:08:12,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:08:51] 2025-10-12 13:08:12,322 | INFO     | aborting loop
[2025-10-12 09:08:51] 2025-10-12 13:08:12,322 | INFO     | all job control threads have been joined
[2025-10-12 09:08:51] 2025-10-12 13:08:12,558 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:08:51] 2025-10-12 13:08:12,773 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:12,965 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:08:51] 2025-10-12 13:08:13,078 | INFO     | [payload] control thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,281 | INFO     | [data] control thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,327 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,328 | INFO     | [job] control thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,363 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,448 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,492 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,593 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,633 | INFO     | [job] validate thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,669 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,758 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:13,772 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:14,067 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:16,567 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:08:51] 2025-10-12 13:08:40,870 | INFO     | PID=2840615 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:08:51] 2025-10-12 13:08:40,871 | INFO     | .. there are 23 such processes running
[2025-10-12 09:08:51] 2025-10-12 13:08:40,871 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:08:51] 2025-10-12 13:08:40,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:08:51] 2025-10-12 13:08:40,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:08:51] 2025-10-12 13:08:43,029 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:08:51] 2025-10-12 13:08:43,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140207816906560)>', '<ExcThread(monitor, started 140206648846080)>']
[2025-10-12 09:08:51] 2025-10-12 13:08:44,909 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:08:51] 2025-10-12 13:08:44,910 | INFO     | [monitor] control thread has ended
[2025-10-12 09:08:51] 2025-10-12 13:08:48,985 | INFO     | all workflow threads have been joined
[2025-10-12 09:08:51] 2025-10-12 13:08:48,986 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:08:51] 2025-10-12 13:08:48,986 | INFO     | traces error code: 0
[2025-10-12 09:08:51] 2025-10-12 13:08:48,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:08:51] 2025-10-12 13:08:50,040 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:08:51] 2025-10-12 13:08:50,042 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:08:51] 2025-10-12 13:08:50,044 [wrapper] pilotpid: 2840615
[2025-10-12 09:08:51] 2025-10-12 13:08:50,046 [wrapper] Pilot exit status: 0
[2025-10-12 09:08:51] 2025-10-12 13:08:50,091 [wrapper] pandaids: 6839658319
[2025-10-12 09:08:51] 2025-10-12 13:08:50,997 [wrapper] cleanup supervisor_pilot 3083513 2840616
[2025-10-12 09:08:51] 2025-10-12 13:08:51,020 [wrapper] Test setup, not cleaning
[2025-10-12 09:08:51] 2025-10-12 13:08:51,038 [wrapper] apfmon messages muted
[2025-10-12 09:08:51] 2025-10-12 13:08:51,050 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:08:51] 2025-10-12 13:08:51,065 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:08:51]  *** Error codes and diagnostics ***
[2025-10-12 09:08:51]     "exeErrorCode": 0,
[2025-10-12 09:08:51]     "exeErrorDiag": "",
[2025-10-12 09:08:51]     "pilotErrorCode": 0,
[2025-10-12 09:08:51]     "pilotErrorDiag": "",
[2025-10-12 09:08:51]  *** Listing of results directory ***
[2025-10-12 09:08:51] total 404008
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 09:08:51] -rwx------. 1 boincer umatlas     36292 Oct 12 03:22 runpilot2-wrapper.sh
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 03:22 queuedata.json
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas       100 Oct 12 07:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:08:51] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 07:58 run_atlas
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas       105 Oct 12 07:58 job.xml
[2025-10-12 09:08:51] -rw-r--r--. 2 boincer umatlas 218504823 Oct 12 07:58 EVNT.46676267._003499.pool.root.1
[2025-10-12 09:08:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:58 start_atlas.sh
[2025-10-12 09:08:51] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 07:58 shared
[2025-10-12 09:08:51] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 07:58 input.tar.gz
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas         0 Oct 12 07:58 boinc_lockfile
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 07:58 pandaJob.out
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas    975520 Oct 12 07:59 agis_schedconf.cvmfs.json
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:08:51] drwx------. 5 boincer umatlas      4096 Oct 12 07:59 pilot3
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas      7172 Oct 12 09:02 init_data.xml
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas 189417801 Oct 12 09:06 HITS.46676269._073476.pool.root.1
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas       529 Oct 12 09:06 boinc_task_state.xml
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas      1050 Oct 12 09:07 memory_monitor_summary.json
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas    348580 Oct 12 09:07 log.46676269._073476.job.log.tgz.1
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas        95 Oct 12 09:07 pilot_heartbeat.json
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas      7818 Oct 12 09:08 heartbeat.json
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas      4825 Oct 12 09:08 pilotlog.txt
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas        27 Oct 12 09:08 wrapper_checkpoint.txt
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 09:08 boinc_mmap_file
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas    590074 Oct 12 09:08 log.46676269._073476.job.log.1
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas       357 Oct 12 09:08 output.list
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas       620 Oct 12 09:08 runtime_log
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas    962560 Oct 12 09:08 result.tar.gz
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas       657 Oct 12 09:08 utgNDmfa5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmY0iNDmoIQY0n.diag
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 09:08 runtime_log.err
[2025-10-12 09:08:51] -rw-r--r--. 1 boincer umatlas     14813 Oct 12 09:08 stderr.txt
[2025-10-12 09:08:51] HITS file was successfully produced:
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas 189417801 Oct 12 09:06 shared/HITS.pool.root.1
[2025-10-12 09:08:51]  *** Contents of shared directory: ***
[2025-10-12 09:08:51] total 399888
[2025-10-12 09:08:51] -rw-r--r--. 2 boincer umatlas 218504823 Oct 12 07:58 ATLAS.root_0
[2025-10-12 09:08:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:58 start_atlas.sh
[2025-10-12 09:08:51] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 07:58 input.tar.gz
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas 189417801 Oct 12 09:06 HITS.pool.root.1
[2025-10-12 09:08:51] -rw-------. 1 boincer umatlas    962560 Oct 12 09:08 result.tar.gz
09:08:53 (2835240): run_atlas exited; CPU time 24243.161679
09:08:53 (2835240): called boinc_finish(0)

</stderr_txt>
]]>

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