Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:08:23 (2938021): wrapper (7.7.26015): starting
00:08:23 (2938021): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 00:08:23] Arguments: --nthreads 3
[2025-10-13 00:08:23] Threads: 3
[2025-10-13 00:08:23] Checking for CVMFS
[2025-10-13 00:08:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:08:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:08:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:08:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:08:24] 2.9.2.0 1520902 4780 86964 151639 3 56 23211845 36864001 0 130560 0 3743129 99.991 167923 1029 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 00:08:24] CVMFS is ok
[2025-10-13 00:08:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:08:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:08:24] Further information can be found at the LHC@home message board.
[2025-10-13 00:08:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:08:24] Checking for apptainer binary...
[2025-10-13 00:08:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:08:24] Running /usr/bin/apptainer --version
[2025-10-13 00:08:24] apptainer version 1.4.1-1.1
[2025-10-13 00:08:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:08:24] magicA250a
[2025-10-13 00:08:24] apptainer works
[2025-10-13 00:08:24] Set ATHENA_PROC_NUMBER=3
[2025-10-13 00:08:24] Set ATHENA_CORE_NUMBER=3
[2025-10-13 00:08:24] Starting ATLAS job with PandaID=6839637037
[2025-10-13 00:08:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:33:37]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:33:37] 2025-10-12 23:32:59,805 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:33:37] 2025-10-12 23:32:59,807 | INFO     | job 6839637037 has completed (purged errors)
[2025-10-13 01:33:37] 2025-10-12 23:32:59,807 | INFO     | overall cleanup function is called
[2025-10-13 01:33:37] 2025-10-12 23:33:00,813 | INFO     | --- collectZombieJob: --- 10, [2948177]
[2025-10-13 01:33:37] 2025-10-12 23:33:00,813 | INFO     | zombie collector waiting for pid 2948177
[2025-10-13 01:33:37] 2025-10-12 23:33:00,813 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:33:37] 2025-10-12 23:33:00,813 | INFO     | collected zombie processes
[2025-10-13 01:33:37] 2025-10-12 23:33:00,813 | INFO     | will attempt to kill all subprocesses of pid=2948177
[2025-10-13 01:33:37] 2025-10-12 23:33:00,854 | INFO     | process IDs to be killed: [2948177] (in reverse order)
[2025-10-13 01:33:37] 2025-10-12 23:33:00,878 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:33:37] 2025-10-12 23:33:00,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:33:37] 2025-10-12 23:33:00,880 | INFO     | did not find any defunct processes belonging to 2948177
[2025-10-13 01:33:37] 2025-10-12 23:33:00,881 | INFO     | did not find any defunct processes belonging to 2948177
[2025-10-13 01:33:37] 2025-10-12 23:33:00,881 | INFO     | ready for new job
[2025-10-13 01:33:37] 2025-10-12 23:33:00,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:33:37] 2025-10-12 23:33:00,882 | INFO     | ***************************************
[2025-10-13 01:33:37] 2025-10-12 23:33:00,882 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:33:37] 2025-10-12 23:33:00,882 | INFO     | ***************************************
[2025-10-13 01:33:37] 2025-10-12 23:33:00,882 | INFO     | 
[2025-10-13 01:33:37] 2025-10-12 23:33:00,882 | INFO     | architecture information:
[2025-10-13 01:33:37] 2025-10-12 23:33:00,882 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:33:37] 2025-10-12 23:33:00,891 | INFO     | cat /etc/os-release:
[2025-10-13 01:33:37] NAME="CentOS Linux"
[2025-10-13 01:33:37] VERSION="7 (Core)"
[2025-10-13 01:33:37] ID="centos"
[2025-10-13 01:33:37] ID_LIKE="rhel fedora"
[2025-10-13 01:33:37] VERSION_ID="7"
[2025-10-13 01:33:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:33:37] ANSI_COLOR="0;31"
[2025-10-13 01:33:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:33:37] HOME_URL="https://www.centos.org/"
[2025-10-13 01:33:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:33:37] 
[2025-10-13 01:33:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:33:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:33:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:33:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:33:37] 
[2025-10-13 01:33:37] 2025-10-12 23:33:00,891 | INFO     | ***************************************
[2025-10-13 01:33:37] 2025-10-12 23:33:01,394 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 01:33:37] 2025-10-12 23:33:01,405 | INFO     | sufficient remaining disk space (336740745216 B)
[2025-10-13 01:33:37] 2025-10-12 23:33:01,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:33:37] 2025-10-12 23:33:01,405 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:33:37] 2025-10-12 23:33:01,405 | INFO     | update_server=False
[2025-10-13 01:33:37] 2025-10-12 23:33:01,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:33:37] 2025-10-12 23:33:01,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:33:37] 2025-10-12 23:33:01,628 | INFO     | all payload control threads have been joined
[2025-10-13 01:33:37] 2025-10-12 23:33:01,742 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:33:37] 2025-10-12 23:33:01,742 | INFO     | aborting loop
[2025-10-13 01:33:37] 2025-10-12 23:33:01,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:33:37] 2025-10-12 23:33:02,188 | INFO     | all data control threads have been joined
[2025-10-13 01:33:37] 2025-10-12 23:33:02,411 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:02,411 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:02,430 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:02,634 | INFO     | [payload] control thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:02,704 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:02,748 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:03,107 | INFO     | all job control threads have been joined
[2025-10-13 01:33:37] 2025-10-12 23:33:03,161 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:03,188 | INFO     | [data] control thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:03,207 | INFO     | [job] validate thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:03,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:33:37] 2025-10-12 23:33:03,511 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:03,520 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:03,770 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:03,847 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:04,113 | INFO     | [job] control thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:07,376 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:12,183 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:33:37] 2025-10-12 23:33:13,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:33:37] 2025-10-12 23:33:31,041 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:33:37] 2025-10-12 23:33:32,166 | INFO     | PID=2941738 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:33:37] 2025-10-12 23:33:32,166 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:33:37] 2025-10-12 23:33:32,166 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:33:37] 2025-10-12 23:33:32,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:33:37] 2025-10-12 23:33:32,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411784763200)>', '<ExcThread(monitor, started 140411070838528)>']
[2025-10-13 01:33:37] 2025-10-12 23:33:33,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:33:37] 2025-10-12 23:33:33,172 | INFO     | [monitor] control thread has ended
[2025-10-13 01:33:37] 2025-10-12 23:33:37,350 | INFO     | all workflow threads have been joined
[2025-10-13 01:33:37] 2025-10-12 23:33:37,350 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:33:37] 2025-10-12 23:33:37,351 | INFO     | traces error code: 0
[2025-10-13 01:33:37] 2025-10-12 23:33:37,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:33:37] 2025-10-12 23:33:37,399 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:33:37] 2025-10-12 23:33:37,401 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:33:37] 2025-10-12 23:33:37,404 [wrapper] pilotpid: 2941738
[2025-10-13 01:33:37] 2025-10-12 23:33:37,406 [wrapper] Pilot exit status: 0
[2025-10-13 01:33:37] 2025-10-12 23:33:37,413 [wrapper] pandaids: 6839637037
[2025-10-13 01:33:37] 2025-10-12 23:33:37,429 [wrapper] cleanup supervisor_pilot 2960117 2941739
[2025-10-13 01:33:37] 2025-10-12 23:33:37,431 [wrapper] Test setup, not cleaning
[2025-10-13 01:33:37] 2025-10-12 23:33:37,433 [wrapper] apfmon messages muted
[2025-10-13 01:33:37] 2025-10-12 23:33:37,435 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:33:37] 2025-10-12 23:33:37,438 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:33:37]  *** Error codes and diagnostics ***
[2025-10-13 01:33:37]     "exeErrorCode": 0,
[2025-10-13 01:33:37]     "exeErrorDiag": "",
[2025-10-13 01:33:37]     "pilotErrorCode": 0,
[2025-10-13 01:33:37]     "pilotErrorDiag": "",
[2025-10-13 01:33:37]  *** Listing of results directory ***
[2025-10-13 01:33:37] total 418996
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-13 01:33:37] -rwx------ 1 boinc boinc     36292 Oct 12 09:00 runpilot2-wrapper.sh
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc      5112 Oct 12 09:00 queuedata.json
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc       100 Oct 13 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:33:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 00:08 run_atlas
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc       105 Oct 13 00:08 job.xml
[2025-10-13 01:33:37] -rw-r--r-- 2 boinc boinc 222410551 Oct 13 00:08 EVNT.46676267._003491.pool.root.1
[2025-10-13 01:33:37] -rw-r--r-- 2 boinc boinc    569675 Oct 13 00:08 input.tar.gz
[2025-10-13 01:33:37] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:08 start_atlas.sh
[2025-10-13 01:33:37] drwxrwx--x 2 boinc boinc      4096 Oct 13 00:08 shared
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:08 boinc_setup_complete
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc      6442 Oct 13 00:08 init_data.xml
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:08 boinc_lockfile
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc      2550 Oct 13 00:08 pandaJob.out
[2025-10-13 01:33:37] -rw------- 1 boinc boinc    975528 Oct 13 00:08 agis_schedconf.cvmfs.json
[2025-10-13 01:33:37] -rw------- 1 boinc boinc   1560580 Oct 13 00:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:33:37] drwx------ 5 boinc boinc      4096 Oct 13 00:08 pilot3
[2025-10-13 01:33:37] -rw------- 1 boinc boinc 200712900 Oct 13 01:32 HITS.46676269._073295.pool.root.1
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc       529 Oct 13 01:32 boinc_task_state.xml
[2025-10-13 01:33:37] -rw------- 1 boinc boinc      1024 Oct 13 01:32 memory_monitor_summary.json
[2025-10-13 01:33:37] -rw------- 1 boinc boinc    268544 Oct 13 01:32 log.46676269._073295.job.log.tgz.1
[2025-10-13 01:33:37] -rw------- 1 boinc boinc        95 Oct 13 01:32 pilot_heartbeat.json
[2025-10-13 01:33:37] -rw------- 1 boinc boinc      7770 Oct 13 01:32 heartbeat.json
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:33 boinc_mmap_file
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:33 wrapper_checkpoint.txt
[2025-10-13 01:33:37] -rw------- 1 boinc boinc      4824 Oct 13 01:33 pilotlog.txt
[2025-10-13 01:33:37] -rw------- 1 boinc boinc    743672 Oct 13 01:33 log.46676269._073295.job.log.1
[2025-10-13 01:33:37] -rw------- 1 boinc boinc       357 Oct 13 01:33 output.list
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:33 runtime_log
[2025-10-13 01:33:37] -rw------- 1 boinc boinc   1034240 Oct 13 01:33 result.tar.gz
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc      8797 Oct 13 01:33 runtime_log.err
[2025-10-13 01:33:37] -rw------- 1 boinc boinc       662 Oct 13 01:33 QOAMDmnF5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMyiNDmkGBnMn.diag
[2025-10-13 01:33:37] -rw-r--r-- 1 boinc boinc     12929 Oct 13 01:33 stderr.txt
[2025-10-13 01:33:37] HITS file was successfully produced:
[2025-10-13 01:33:37] -rw------- 1 boinc boinc 200712900 Oct 13 01:32 shared/HITS.pool.root.1
[2025-10-13 01:33:37]  *** Contents of shared directory: ***
[2025-10-13 01:33:37] total 414808
[2025-10-13 01:33:37] -rw-r--r-- 2 boinc boinc 222410551 Oct 13 00:08 ATLAS.root_0
[2025-10-13 01:33:37] -rw-r--r-- 2 boinc boinc    569675 Oct 13 00:08 input.tar.gz
[2025-10-13 01:33:37] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:08 start_atlas.sh
[2025-10-13 01:33:37] -rw------- 1 boinc boinc 200712900 Oct 13 01:32 HITS.pool.root.1
[2025-10-13 01:33:37] -rw------- 1 boinc boinc   1034240 Oct 13 01:33 result.tar.gz
01:33:39 (2938021): run_atlas exited; CPU time 14581.674342
01:33:39 (2938021): called boinc_finish(0)

</stderr_txt>
]]>

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