Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:37:29 (3806760): wrapper (7.7.26015): starting
23:37:29 (3806760): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 23:37:29] Arguments: --nthreads 4
[2025-10-12 23:37:29] Threads: 4
[2025-10-12 23:37:29] Checking for CVMFS
[2025-10-12 23:37:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:37:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:37:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:37:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:37:30] 2.9.2.0 2039669 4869 99372 151638 0 57 26716169 36864001 0 130560 0 4573120 99.989 292488 1258 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 23:37:30] CVMFS is ok
[2025-10-12 23:37:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:37:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:37:30] Further information can be found at the LHC@home message board.
[2025-10-12 23:37:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:37:30] Checking for apptainer binary...
[2025-10-12 23:37:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:37:30] Running /usr/bin/apptainer --version
[2025-10-12 23:37:30] apptainer version 1.4.1-1.1
[2025-10-12 23:37:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:37:30] thA315a
[2025-10-12 23:37:30] apptainer works
[2025-10-12 23:37:30] Set ATHENA_PROC_NUMBER=4
[2025-10-12 23:37:30] Set ATHENA_CORE_NUMBER=4
[2025-10-12 23:37:30] Starting ATLAS job with PandaID=6839385001
[2025-10-12 23:37:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:46:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:46:47] 2025-10-12 22:46:09,935 | INFO     | overall cleanup function is called
[2025-10-13 00:46:47] 2025-10-12 22:46:10,772 | INFO     | PID=3810561 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 00:46:47] 2025-10-12 22:46:10,942 | INFO     | --- collectZombieJob: --- 10, [3817127]
[2025-10-13 00:46:47] 2025-10-12 22:46:10,942 | INFO     | zombie collector waiting for pid 3817127
[2025-10-13 00:46:47] 2025-10-12 22:46:10,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:46:47] 2025-10-12 22:46:10,942 | INFO     | collected zombie processes
[2025-10-13 00:46:47] 2025-10-12 22:46:10,942 | INFO     | will attempt to kill all subprocesses of pid=3817127
[2025-10-13 00:46:47] 2025-10-12 22:46:10,986 | INFO     | process IDs to be killed: [3817127] (in reverse order)
[2025-10-13 00:46:47] 2025-10-12 22:46:11,017 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:46:47] 2025-10-12 22:46:11,017 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:46:47] 2025-10-12 22:46:11,019 | INFO     | did not find any defunct processes belonging to 3817127
[2025-10-13 00:46:47] 2025-10-12 22:46:11,020 | INFO     | did not find any defunct processes belonging to 3817127
[2025-10-13 00:46:47] 2025-10-12 22:46:11,020 | INFO     | ready for new job
[2025-10-13 00:46:47] 2025-10-12 22:46:11,020 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:46:47] 2025-10-12 22:46:11,021 | INFO     | ***************************************
[2025-10-13 00:46:47] 2025-10-12 22:46:11,021 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:46:47] 2025-10-12 22:46:11,021 | INFO     | ***************************************
[2025-10-13 00:46:47] 2025-10-12 22:46:11,021 | INFO     | 
[2025-10-13 00:46:47] 2025-10-12 22:46:11,022 | INFO     | architecture information:
[2025-10-13 00:46:47] 2025-10-12 22:46:11,022 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:46:47] 2025-10-12 22:46:11,034 | INFO     | cat /etc/os-release:
[2025-10-13 00:46:47] NAME="CentOS Linux"
[2025-10-13 00:46:47] VERSION="7 (Core)"
[2025-10-13 00:46:47] ID="centos"
[2025-10-13 00:46:47] ID_LIKE="rhel fedora"
[2025-10-13 00:46:47] VERSION_ID="7"
[2025-10-13 00:46:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:46:47] ANSI_COLOR="0;31"
[2025-10-13 00:46:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:46:47] HOME_URL="https://www.centos.org/"
[2025-10-13 00:46:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:46:47] 
[2025-10-13 00:46:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:46:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:46:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:46:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:46:47] 
[2025-10-13 00:46:47] 2025-10-12 22:46:11,035 | INFO     | ***************************************
[2025-10-13 00:46:47] 2025-10-12 22:46:11,538 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 00:46:47] 2025-10-12 22:46:11,555 | INFO     | sufficient remaining disk space (232627634176 B)
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | INFO     | update_server=False
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:46:47] 2025-10-12 22:46:11,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:46:47] 2025-10-12 22:46:11,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:46:47] 2025-10-12 22:46:11,683 | INFO     | all job control threads have been joined
[2025-10-13 00:46:47] 2025-10-12 22:46:11,815 | INFO     | all payload control threads have been joined
[2025-10-13 00:46:47] 2025-10-12 22:46:11,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:46:47] 2025-10-12 22:46:12,049 | INFO     | all data control threads have been joined
[2025-10-13 00:46:47] 2025-10-12 22:46:12,342 | INFO     | job.realtimelogging is not enabled
[2025-10-13 00:46:47] 2025-10-12 22:46:12,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:46:47] 2025-10-12 22:46:12,425 | INFO     | aborting loop
[2025-10-13 00:46:47] 2025-10-12 22:46:12,561 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:12,562 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:12,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:46:47] 2025-10-12 22:46:12,689 | INFO     | [job] control thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:12,816 | INFO     | [payload] control thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:12,822 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,055 | INFO     | [data] control thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,261 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,305 | INFO     | [job] validate thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,330 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,347 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,431 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,483 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,726 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,752 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:13,823 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:16,694 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:46:47] 2025-10-12 22:46:42,207 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:46:47] 2025-10-12 22:46:42,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858965686080)>', '<ExcThread(monitor, started 139857959581440)>']
[2025-10-13 00:46:47] 2025-10-12 22:46:43,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:46:47] 2025-10-12 22:46:43,728 | INFO     | [monitor] control thread has ended
[2025-10-13 00:46:47] 2025-10-12 22:46:47,806 | INFO     | all workflow threads have been joined
[2025-10-13 00:46:47] 2025-10-12 22:46:47,806 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:46:47] 2025-10-12 22:46:47,806 | INFO     | traces error code: 0
[2025-10-13 00:46:47] 2025-10-12 22:46:47,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:46:47] 2025-10-12 22:46:47,870 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:46:47] 2025-10-12 22:46:47,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:46:47] 2025-10-12 22:46:47,878 [wrapper] pilotpid: 3810561
[2025-10-13 00:46:47] 2025-10-12 22:46:47,881 [wrapper] Pilot exit status: 0
[2025-10-13 00:46:47] 2025-10-12 22:46:47,894 [wrapper] pandaids: 6839385001
[2025-10-13 00:46:47] 2025-10-12 22:46:47,915 [wrapper] cleanup supervisor_pilot 3827130 3810562
[2025-10-13 00:46:47] 2025-10-12 22:46:47,918 [wrapper] Test setup, not cleaning
[2025-10-13 00:46:47] 2025-10-12 22:46:47,922 [wrapper] apfmon messages muted
[2025-10-13 00:46:47] 2025-10-12 22:46:47,925 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:46:47] 2025-10-12 22:46:47,929 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:46:47]  *** Error codes and diagnostics ***
[2025-10-13 00:46:47]     "exeErrorCode": 0,
[2025-10-13 00:46:47]     "exeErrorDiag": "",
[2025-10-13 00:46:47]     "pilotErrorCode": 0,
[2025-10-13 00:46:47]     "pilotErrorDiag": "",
[2025-10-13 00:46:47]  *** Listing of results directory ***
[2025-10-13 00:46:47] total 407052
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc    557409 Oct 12 05:35 pilot3.tar.gz
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:55 queuedata.json
[2025-10-13 00:46:47] -rwx------ 1 boinc boinc     36292 Oct 12 05:55 runpilot2-wrapper.sh
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:46:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:37 run_atlas
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:37 job.xml
[2025-10-13 00:46:47] -rw-r--r-- 2 boinc boinc 219239469 Oct 12 23:37 EVNT.46676267._001130.pool.root.1
[2025-10-13 00:46:47] -rw-r--r-- 2 boinc boinc    569690 Oct 12 23:37 input.tar.gz
[2025-10-13 00:46:47] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:37 start_atlas.sh
[2025-10-13 00:46:47] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:37 shared
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:37 boinc_setup_complete
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc      6371 Oct 12 23:37 init_data.xml
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:37 boinc_lockfile
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc      2550 Oct 12 23:37 pandaJob.out
[2025-10-13 00:46:47] -rw------- 1 boinc boinc    975528 Oct 12 23:37 agis_schedconf.cvmfs.json
[2025-10-13 00:46:47] -rw------- 1 boinc boinc   1560580 Oct 12 23:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:46:47] drwx------ 5 boinc boinc      4096 Oct 12 23:37 pilot3
[2025-10-13 00:46:47] -rw------- 1 boinc boinc 191928558 Oct 13 00:45 HITS.46676269._070245.pool.root.1
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc       529 Oct 13 00:45 boinc_task_state.xml
[2025-10-13 00:46:47] -rw------- 1 boinc boinc        95 Oct 13 00:45 pilot_heartbeat.json
[2025-10-13 00:46:47] -rw------- 1 boinc boinc      1023 Oct 13 00:46 memory_monitor_summary.json
[2025-10-13 00:46:47] -rw------- 1 boinc boinc    265669 Oct 13 00:46 log.46676269._070245.job.log.tgz.1
[2025-10-13 00:46:47] -rw------- 1 boinc boinc      7769 Oct 13 00:46 heartbeat.json
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc      8192 Oct 13 00:46 boinc_mmap_file
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc        27 Oct 13 00:46 wrapper_checkpoint.txt
[2025-10-13 00:46:47] -rw------- 1 boinc boinc      4628 Oct 13 00:46 pilotlog.txt
[2025-10-13 00:46:47] -rw------- 1 boinc boinc    614239 Oct 13 00:46 log.46676269._070245.job.log.1
[2025-10-13 00:46:47] -rw------- 1 boinc boinc       357 Oct 13 00:46 output.list
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc       620 Oct 13 00:46 runtime_log
[2025-10-13 00:46:47] -rw------- 1 boinc boinc    901120 Oct 13 00:46 result.tar.gz
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc      8782 Oct 13 00:46 runtime_log.err
[2025-10-13 00:46:47] -rw------- 1 boinc boinc       659 Oct 13 00:46 XYCMDmUM2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm66SMDm2Q76Wm.diag
[2025-10-13 00:46:47] -rw-r--r-- 1 boinc boinc     10948 Oct 13 00:46 stderr.txt
[2025-10-13 00:46:47] HITS file was successfully produced:
[2025-10-13 00:46:47] -rw------- 1 boinc boinc 191928558 Oct 13 00:45 shared/HITS.pool.root.1
[2025-10-13 00:46:47]  *** Contents of shared directory: ***
[2025-10-13 00:46:48] total 403000
[2025-10-13 00:46:48] -rw-r--r-- 2 boinc boinc 219239469 Oct 12 23:37 ATLAS.root_0
[2025-10-13 00:46:48] -rw-r--r-- 2 boinc boinc    569690 Oct 12 23:37 input.tar.gz
[2025-10-13 00:46:48] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:37 start_atlas.sh
[2025-10-13 00:46:48] -rw------- 1 boinc boinc 191928558 Oct 13 00:45 HITS.pool.root.1
[2025-10-13 00:46:48] -rw------- 1 boinc boinc    901120 Oct 13 00:46 result.tar.gz
00:46:49 (3806760): run_atlas exited; CPU time 15460.305387
00:46:49 (3806760): called boinc_finish(0)

</stderr_txt>
]]>

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