Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:29:52 (383208): wrapper (7.7.26015): starting
17:29:52 (383208): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 17:29:52] Arguments: --nthreads 12
[2025-10-12 17:29:52] Threads: 12
[2025-10-12 17:29:52] Checking for CVMFS
[2025-10-12 17:29:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:29:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:29:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:29:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:29:52] 2.13.1.0 4007501 1255 69360 151625 2 57 3279724 4097024 0 130560 0 1484102 99.994 45582 3997 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 17:29:52] CVMFS is ok
[2025-10-12 17:29:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:29:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:29:52] Further information can be found at the LHC@home message board.
[2025-10-12 17:29:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:29:52] Checking for apptainer binary...
[2025-10-12 17:29:52] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 17:29:52] apptainer is not installed, using version from CVMFS
[2025-10-12 17:29:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:29:53] pckelar6.cern.ch
[2025-10-12 17:29:53] apptainer works
[2025-10-12 17:29:53] Set ATHENA_PROC_NUMBER=12
[2025-10-12 17:29:53] Set ATHENA_CORE_NUMBER=12
[2025-10-12 17:29:53] Starting ATLAS job with PandaID=6839162277
[2025-10-12 17:29:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:42:13]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:42:13]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6839162277/log.46676269._066884.job.log.tgz.1
[2025-10-12 18:42:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/81/log.46676269._066884.job.log.tgz.1
[2025-10-12 18:42:13]  workdir=None
[2025-10-12 18:42:13] ]
[2025-10-12 18:42:13] 2025-10-12 16:41:19,514 | INFO     | transferring file log.46676269._066884.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6839162277/log.46676269._066884.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 18:42:13] 2025-10-12 16:41:19,514 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6839162277/log.46676269._066884.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._066884.job
[2025-10-12 18:42:13] 2025-10-12 16:41:19,527 | INFO     | adding to output.list: log.46676269._066884.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/81/log.46676269._066884.job.log.tg
[2025-10-12 18:42:13] 2025-10-12 16:41:19,528 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 18:42:13] 2025-10-12 16:41:19,528 | INFO     | summary of transferred files:
[2025-10-12 18:42:13] 2025-10-12 16:41:19,528 | INFO     |  -- lfn=log.46676269._066884.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 18:42:13] 2025-10-12 16:41:19,528 | INFO     | stage-out finished correctly
[2025-10-12 18:42:13] 2025-10-12 16:41:20,026 | INFO     | time since job start (4280s) is within the limit (172800.0s)
[2025-10-12 18:42:13] 2025-10-12 16:41:20,848 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 18:42:13] 2025-10-12 16:41:21,132 | INFO     | PID=386959 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 18:42:13] 2025-10-12 16:41:21,275 | WARNING  | process 394321 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 18:42:13] 2025-10-12 16:41:21,275 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839162277/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:42:13] 2025-10-12 16:41:21,350 | INFO     | number of running child processes to parent process 394321: 1
[2025-10-12 18:42:13] 2025-10-12 16:41:21,350 | INFO     | maximum number of monitored processes: 6
[2025-10-12 18:42:13] 2025-10-12 16:41:21,502 | INFO     | job 6839162277 has state=finished
[2025-10-12 18:42:13] 2025-10-12 16:41:21,502 | INFO     | preparing for final server update for job 6839162277 in state='finished'
[2025-10-12 18:42:13] 2025-10-12 16:41:21,503 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:42:13] 2025-10-12 16:41:21,503 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:42:13] 2025-10-12 16:41:21,503 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:42:13] 2025-10-12 16:41:21,503 | INFO     | job 6839162277 has finished - writing final server update
[2025-10-12 18:42:13] 2025-10-12 16:41:21,503 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:42:13] 2025-10-12 16:41:21,504 | INFO     | executing command: lscpu
[2025-10-12 18:42:13] 2025-10-12 16:41:21,526 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:42:13] 2025-10-12 16:41:22,133 | INFO     | time since job start (4282s) is within the limit (172800.0s)
[2025-10-12 18:42:13] 2025-10-12 16:41:23,853 | INFO     | monitor loop #320: job 0:6839162277 is in state 'finished'
[2025-10-12 18:42:13] 2025-10-12 16:41:23,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:42:13] 2025-10-12 16:41:24,138 | INFO     | time since job start (4284s) is within the limit (172800.0s)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,143 | INFO     | time since job start (4286s) is within the limit (172800.0s)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,356 | INFO     | monitor loop #321: job 0:6839162277 is in state 'finished'
[2025-10-12 18:42:13] 2025-10-12 16:41:26,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,424 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 18:42:13] 2025-10-12 16:41:26,426 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2646.188333333333
[2025-10-12 18:42:13] 2025-10-12 16:41:26,428 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839162277/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,428 | INFO     | extracted standard info from prmon json
[2025-10-12 18:42:13] 2025-10-12 16:41:26,428 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:42:13] 2025-10-12 16:41:26,428 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:42:13] 2025-10-12 16:41:26,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:42:13] 2025-10-12 16:41:26,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:42:13] 2025-10-12 16:41:26,430 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:42:13] 2025-10-12 16:41:26,430 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | sum of deviations: -3871006991.0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | mean x: 1760285220.0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | mean y: 3117007.0317460317
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | -- intersect: 87908680306.04196
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | intersect: 87908680306.04196
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | chi2: 0.09772504449073595
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | -- intersect: 87908680306.04196
[2025-10-12 18:42:13] 2025-10-12 16:41:26,431 | INFO     | current memory leak: -49.94 B/s (using 63 data points, chi2=0.10)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | could have reported an average CPU frequency of 2592 MHz (6 samples)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | ..............................
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . Timing measurements:
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . get job = 0 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . initial setup = 1 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . payload setup = 6 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . stage-in = 0 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . payload execution = 4254 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . stage-out = 0 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | . log creation = 0 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,432 | INFO     | ..............................
[2025-10-12 18:42:13] 2025-10-12 16:41:26,772 | INFO     | 
[2025-10-12 18:42:13] 2025-10-12 16:41:26,772 | INFO     | job summary report
[2025-10-12 18:42:13] 2025-10-12 16:41:26,772 | INFO     | --------------------------------------------------
[2025-10-12 18:42:13] 2025-10-12 16:41:26,772 | INFO     | PanDA job id: 6839162277
[2025-10-12 18:42:13] 2025-10-12 16:41:26,772 | INFO     | task id: 46676269
[2025-10-12 18:42:13] 2025-10-12 16:41:26,772 | INFO     | errors: (none)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | pilot state: finished 
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | transexitcode: 0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | exeerrorcode: 0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | exeerrordiag: 
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | exitcode: 0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | exitmsg: OK
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | cpuconsumptiontime: 45159 s
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | nevents: 400
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | neventsw: 0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | pid: 394321
[2025-10-12 18:42:13] 2025-10-12 16:41:26,773 | INFO     | pgrp: 394321
[2025-10-12 18:42:13] 2025-10-12 16:41:26,774 | INFO     | corecount: 12
[2025-10-12 18:42:13] 2025-10-12 16:41:26,774 | INFO     | event service: False
[2025-10-12 18:42:13] 2025-10-12 16:41:26,774 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 4264: 2384299, 4266: 2384299, 4271: 2384621}
[2025-10-12 18:42:13] 2025-10-12 16:41:26,774 | INFO     | --------------------------------------------------
[2025-10-12 18:42:13] 2025-10-12 16:41:26,774 | INFO     | 
[2025-10-12 18:42:13] 2025-10-12 16:41:26,774 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 18:42:13] 2025-10-12 16:41:26,793 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,793 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,793 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,793 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,793 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,793 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,793 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,795 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,795 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:42:13] 2025-10-12 16:41:26,795 | INFO     | job 6839162277 has completed (purged errors)
[2025-10-12 18:42:13] 2025-10-12 16:41:26,795 | INFO     | overall cleanup function is called
[2025-10-12 18:42:13] 2025-10-12 16:41:27,802 | INFO     | --- collectZombieJob: --- 10, [394321]
[2025-10-12 18:42:13] 2025-10-12 16:41:27,802 | INFO     | zombie collector waiting for pid 394321
[2025-10-12 18:42:13] 2025-10-12 16:41:27,802 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:42:13] 2025-10-12 16:41:27,802 | INFO     | collected zombie processes
[2025-10-12 18:42:13] 2025-10-12 16:41:27,802 | INFO     | will attempt to kill all subprocesses of pid=394321
[2025-10-12 18:42:13] 2025-10-12 16:41:27,883 | INFO     | process IDs to be killed: [394321] (in reverse order)
[2025-10-12 18:42:13] 2025-10-12 16:41:27,922 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:42:13] 2025-10-12 16:41:27,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:42:13] 2025-10-12 16:41:27,925 | INFO     | did not find any defunct processes belonging to 394321
[2025-10-12 18:42:13] 2025-10-12 16:41:27,927 | INFO     | did not find any defunct processes belonging to 394321
[2025-10-12 18:42:13] 2025-10-12 16:41:27,927 | INFO     | ready for new job
[2025-10-12 18:42:13] 2025-10-12 16:41:27,927 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:42:13] 2025-10-12 16:41:27,928 | INFO     | ***************************************
[2025-10-12 18:42:13] 2025-10-12 16:41:27,928 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:42:13] 2025-10-12 16:41:27,929 | INFO     | ***************************************
[2025-10-12 18:42:13] 2025-10-12 16:41:27,929 | INFO     | 
[2025-10-12 18:42:13] 2025-10-12 16:41:27,929 | INFO     | architecture information:
[2025-10-12 18:42:13] 2025-10-12 16:41:27,929 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:42:13] 2025-10-12 16:41:27,939 | INFO     | cat /etc/os-release:
[2025-10-12 18:42:13] NAME="CentOS Linux"
[2025-10-12 18:42:13] VERSION="7 (Core)"
[2025-10-12 18:42:13] ID="centos"
[2025-10-12 18:42:13] ID_LIKE="rhel fedora"
[2025-10-12 18:42:13] VERSION_ID="7"
[2025-10-12 18:42:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:42:13] ANSI_COLOR="0;31"
[2025-10-12 18:42:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:42:13] HOME_URL="https://www.centos.org/"
[2025-10-12 18:42:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:42:13] 
[2025-10-12 18:42:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:42:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:42:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:42:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:42:13] 
[2025-10-12 18:42:13] 2025-10-12 16:41:27,939 | INFO     | ***************************************
[2025-10-12 18:42:13] 2025-10-12 16:41:28,442 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 18:42:13] 2025-10-12 16:41:28,452 | INFO     | sufficient remaining disk space (870024478720 B)
[2025-10-12 18:42:13] 2025-10-12 16:41:28,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:42:13] 2025-10-12 16:41:28,453 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:42:13] 2025-10-12 16:41:28,453 | INFO     | update_server=False
[2025-10-12 18:42:13] 2025-10-12 16:41:28,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:42:13] 2025-10-12 16:41:28,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:42:13] 2025-10-12 16:41:28,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:42:13] 2025-10-12 16:41:28,519 | INFO     | all data control threads have been joined
[2025-10-12 18:42:13] 2025-10-12 16:41:28,859 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 18:42:13] 2025-10-12 16:41:28,859 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 18:42:13] 2025-10-12 16:41:28,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:42:13] 2025-10-12 16:41:28,859 | INFO     | will abort loop
[2025-10-12 18:42:13] 2025-10-12 16:41:28,913 | INFO     | all job control threads have been joined
[2025-10-12 18:42:13] 2025-10-12 16:41:29,314 | INFO     | all payload control threads have been joined
[2025-10-12 18:42:13] 2025-10-12 16:41:29,458 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,459 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,480 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,525 | INFO     | [data] control thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,578 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,701 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,742 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,807 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,864 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:29,918 | INFO     | [job] control thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:30,319 | INFO     | [payload] control thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:30,397 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:30,459 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:30,808 | INFO     | [job] validate thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:31,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:42:13] 2025-10-12 16:41:35,426 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:39,255 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:42:13] 2025-10-12 16:41:40,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:42:13] 2025-10-12 16:41:59,331 | INFO     | PID=386959 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 18:42:13] 2025-10-12 16:41:59,332 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:42:13] 2025-10-12 16:41:59,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:42:13] 2025-10-12 16:41:59,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:42:13] 2025-10-12 16:42:06,874 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:42:13] 2025-10-12 16:42:07,860 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139833346213696)>', '<ExcThread(monitor, started 139832575645440)>']
[2025-10-12 18:42:13] 2025-10-12 16:42:08,378 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:42:13] 2025-10-12 16:42:08,378 | INFO     | [monitor] control thread has ended
[2025-10-12 18:42:13] 2025-10-12 16:42:12,886 | INFO     | all workflow threads have been joined
[2025-10-12 18:42:13] 2025-10-12 16:42:12,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:42:13] 2025-10-12 16:42:12,886 | INFO     | traces error code: 0
[2025-10-12 18:42:13] 2025-10-12 16:42:12,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:42:13] 2025-10-12 16:42:12,966 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:42:13] 2025-10-12 16:42:12,969 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:42:13] 2025-10-12 16:42:12,971 [wrapper] pilotpid: 386959
[2025-10-12 18:42:13] 2025-10-12 16:42:12,974 [wrapper] Pilot exit status: 0
[2025-10-12 18:42:13] 2025-10-12 16:42:12,982 [wrapper] pandaids: 6839162277
[2025-10-12 18:42:13] 2025-10-12 16:42:13,003 [wrapper] cleanup supervisor_pilot  409080 386960
[2025-10-12 18:42:13] 2025-10-12 16:42:13,005 [wrapper] Test setup, not cleaning
[2025-10-12 18:42:13] 2025-10-12 16:42:13,006 [wrapper] apfmon messages muted
[2025-10-12 18:42:13] 2025-10-12 16:42:13,008 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:42:13] 2025-10-12 16:42:13,010 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:42:13]  *** Error codes and diagnostics ***
[2025-10-12 18:42:13]     "exeErrorCode": 0,
[2025-10-12 18:42:13]     "exeErrorDiag": "",
[2025-10-12 18:42:13]     "pilotErrorCode": 0,
[2025-10-12 18:42:13]     "pilotErrorDiag": "",
[2025-10-12 18:42:13]  *** Listing of results directory ***
[2025-10-12 18:42:13] total 414536
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc    557409 Oct 12 01:09 pilot3.tar.gz
[2025-10-12 18:42:13] -rwx------. 1 boinc boinc     36292 Oct 12 01:18 runpilot2-wrapper.sh
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc      5112 Oct 12 01:18 queuedata.json
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc       100 Oct 12 17:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:42:13] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 17:29 run_atlas
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc       105 Oct 12 17:29 job.xml
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc      6291 Oct 12 17:29 init_data.xml
[2025-10-12 18:42:13] -rw-r--r--. 2 boinc boinc 221663351 Oct 12 17:29 EVNT.46676267._002705.pool.root.1
[2025-10-12 18:42:13] -rw-r--r--. 2 boinc boinc     15120 Oct 12 17:29 start_atlas.sh
[2025-10-12 18:42:13] drwxrwx--x. 2 boinc boinc        68 Oct 12 17:29 shared
[2025-10-12 18:42:13] -rw-r--r--. 2 boinc boinc    569670 Oct 12 17:29 input.tar.gz
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc         0 Oct 12 17:29 boinc_lockfile
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc      2550 Oct 12 17:29 pandaJob.out
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc    975528 Oct 12 17:29 agis_schedconf.cvmfs.json
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc   1560580 Oct 12 17:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:42:13] drwx------. 5 boinc boinc      4096 Oct 12 17:30 pilot3
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc 196919661 Oct 12 18:40 HITS.46676269._066884.pool.root.1
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc       529 Oct 12 18:41 boinc_task_state.xml
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc      1019 Oct 12 18:41 memory_monitor_summary.json
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc    377202 Oct 12 18:41 log.46676269._066884.job.log.tgz.1
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc      7787 Oct 12 18:41 heartbeat.json
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc        95 Oct 12 18:41 pilot_heartbeat.json
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc      8192 Oct 12 18:42 boinc_mmap_file
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc        27 Oct 12 18:42 wrapper_checkpoint.txt
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc      5006 Oct 12 18:42 pilotlog.txt
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc    626255 Oct 12 18:42 log.46676269._066884.job.log.1
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc       357 Oct 12 18:42 output.list
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc       620 Oct 12 18:42 runtime_log
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc   1024000 Oct 12 18:42 result.tar.gz
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc       655 Oct 12 18:42 RXwLDmO2xR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzwhNDm2SaDgm.diag
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc      8727 Oct 12 18:42 runtime_log.err
[2025-10-12 18:42:13] -rw-r--r--. 1 boinc boinc     22444 Oct 12 18:42 stderr.txt
[2025-10-12 18:42:13] HITS file was successfully produced:
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc 196919661 Oct 12 18:40 shared/HITS.pool.root.1
[2025-10-12 18:42:13]  *** Contents of shared directory: ***
[2025-10-12 18:42:13] total 410356
[2025-10-12 18:42:13] -rw-r--r--. 2 boinc boinc 221663351 Oct 12 17:29 ATLAS.root_0
[2025-10-12 18:42:13] -rw-r--r--. 2 boinc boinc     15120 Oct 12 17:29 start_atlas.sh
[2025-10-12 18:42:13] -rw-r--r--. 2 boinc boinc    569670 Oct 12 17:29 input.tar.gz
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc 196919661 Oct 12 18:40 HITS.pool.root.1
[2025-10-12 18:42:13] -rw-------. 1 boinc boinc   1024000 Oct 12 18:42 result.tar.gz
18:42:14 (383208): run_atlas exited; CPU time 45187.619659
18:42:14 (383208): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN