Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:56:06 (2351): wrapper (7.7.26015): starting
07:56:06 (2351): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 07:56:06] Arguments: --nthreads 12
[2025-10-12 07:56:06] Threads: 12
[2025-10-12 07:56:06] Checking for CVMFS
[2025-10-12 07:56:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:56:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:56:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:56:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:56:06] 2.11.2.0 3165 8470 80020 151619 2 57 11580349 20275201 1 130560 0 8131782 99.993 280098 42828 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 07:56:06] CVMFS is ok
[2025-10-12 07:56:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:56:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:56:06] Further information can be found at the LHC@home message board.
[2025-10-12 07:56:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:56:06] Checking for apptainer binary...
[2025-10-12 07:56:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:56:06] Running /usr/bin/apptainer --version
[2025-10-12 07:56:06] apptainer version 1.3.2-1.el7
[2025-10-12 07:56:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:56:07] c-115-40.aglt2.org
[2025-10-12 07:56:07] apptainer works
[2025-10-12 07:56:07] Set ATHENA_PROC_NUMBER=12
[2025-10-12 07:56:07] Set ATHENA_CORE_NUMBER=12
[2025-10-12 07:56:07] Starting ATLAS job with PandaID=6839636969
[2025-10-12 07:56:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:03:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:03:46]  status=None
[2025-10-12 09:03:46]  status_code=0
[2025-10-12 09:03:46]  storage_token=
[2025-10-12 09:03:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839636969/log.46676269._073227.job.log.tgz.1
[2025-10-12 09:03:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/73/69/log.46676269._073227.job.log.tgz.1
[2025-10-12 09:03:46]  workdir=None
[2025-10-12 09:03:46] ]
[2025-10-12 09:03:46] 2025-10-12 13:03:04,840 | INFO     | transferring file log.46676269._073227.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839636969/log.46676269._073227.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 09:03:46] 2025-10-12 13:03:04,840 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839636969/log.46676269._073227.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._073227.job
[2025-10-12 09:03:46] 2025-10-12 13:03:04,863 | INFO     | adding to output.list: log.46676269._073227.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/73/69/log.46676269._073227.job.log.tg
[2025-10-12 09:03:46] 2025-10-12 13:03:04,864 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 09:03:46] 2025-10-12 13:03:04,864 | INFO     | summary of transferred files:
[2025-10-12 09:03:46] 2025-10-12 13:03:04,864 | INFO     |  -- lfn=log.46676269._073227.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 09:03:46] 2025-10-12 13:03:04,865 | INFO     | stage-out finished correctly
[2025-10-12 09:03:46] 2025-10-12 13:03:05,020 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:03:46] 2025-10-12 13:03:06,785 | INFO     | time since job start (4004s) is within the limit (172800.0s)
[2025-10-12 09:03:46] 2025-10-12 13:03:07,756 | WARNING  | process 12543 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 09:03:46] 2025-10-12 13:03:07,756 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839636969/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:03:46] 2025-10-12 13:03:07,843 | INFO     | number of running child processes to parent process 12543: 1
[2025-10-12 09:03:46] 2025-10-12 13:03:07,843 | INFO     | maximum number of monitored processes: 6
[2025-10-12 09:03:46] 2025-10-12 13:03:07,884 | INFO     | job 6839636969 has state=finished
[2025-10-12 09:03:46] 2025-10-12 13:03:07,884 | INFO     | preparing for final server update for job 6839636969 in state='finished'
[2025-10-12 09:03:46] 2025-10-12 13:03:07,885 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:03:46] 2025-10-12 13:03:07,885 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:03:46] 2025-10-12 13:03:07,885 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:03:46] 2025-10-12 13:03:07,885 | INFO     | job 6839636969 has finished - writing final server update
[2025-10-12 09:03:46] 2025-10-12 13:03:07,885 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:03:46] 2025-10-12 13:03:07,886 | INFO     | executing command: lscpu
[2025-10-12 09:03:46] 2025-10-12 13:03:07,914 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:03:46] 2025-10-12 13:03:08,791 | INFO     | time since job start (4006s) is within the limit (172800.0s)
[2025-10-12 09:03:46] 2025-10-12 13:03:10,346 | INFO     | monitor loop #299: job 0:6839636969 is in state 'finished'
[2025-10-12 09:03:46] 2025-10-12 13:03:10,346 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:46] 2025-10-12 13:03:10,797 | INFO     | time since job start (4008s) is within the limit (172800.0s)
[2025-10-12 09:03:46] 2025-10-12 13:03:12,802 | INFO     | time since job start (4010s) is within the limit (172800.0s)
[2025-10-12 09:03:46] 2025-10-12 13:03:12,849 | INFO     | monitor loop #300: job 0:6839636969 is in state 'finished'
[2025-10-12 09:03:46] 2025-10-12 13:03:12,849 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:46] 2025-10-12 13:03:13,489 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 09:03:46] 2025-10-12 13:03:13,493 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-10-12 09:03:46] 2025-10-12 13:03:13,495 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839636969/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:03:46] 2025-10-12 13:03:13,496 | INFO     | extracted standard info from prmon json
[2025-10-12 09:03:46] 2025-10-12 13:03:13,496 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:03:46] 2025-10-12 13:03:13,496 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:03:46] 2025-10-12 13:03:13,496 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:03:46] 2025-10-12 13:03:13,496 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:03:46] 2025-10-12 13:03:13,498 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:03:46] 2025-10-12 13:03:13,498 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,499 | INFO     | sum of deviations: -4038964818.0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,499 | INFO     | mean x: 1760272285.0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,499 | INFO     | mean y: 2757120.4237288134
[2025-10-12 09:03:46] 2025-10-12 13:03:13,499 | INFO     | -- intersect: 111673715107.70883
[2025-10-12 09:03:46] 2025-10-12 13:03:13,499 | INFO     | intersect: 111673715107.70883
[2025-10-12 09:03:46] 2025-10-12 13:03:13,499 | INFO     | chi2: 0.04831148306674747
[2025-10-12 09:03:46] 2025-10-12 13:03:13,500 | INFO     | -- intersect: 111673715107.70883
[2025-10-12 09:03:46] 2025-10-12 13:03:13,500 | INFO     | current memory leak: -63.44 B/s (using 59 data points, chi2=0.05)
[2025-10-12 09:03:46] 2025-10-12 13:03:13,500 | INFO     | could have reported an average CPU frequency of 2152 MHz (6 samples)
[2025-10-12 09:03:46] 2025-10-12 13:03:13,500 | INFO     | ..............................
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . Timing measurements:
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . get job = 0 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . initial setup = 2 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . payload setup = 6 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . stage-in = 0 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . payload execution = 3974 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . stage-out = 0 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | . log creation = 0 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,501 | INFO     | ..............................
[2025-10-12 09:03:46] 2025-10-12 13:03:13,907 | INFO     | 
[2025-10-12 09:03:46] 2025-10-12 13:03:13,908 | INFO     | job summary report
[2025-10-12 09:03:46] 2025-10-12 13:03:13,908 | INFO     | --------------------------------------------------
[2025-10-12 09:03:46] 2025-10-12 13:03:13,908 | INFO     | PanDA job id: 6839636969
[2025-10-12 09:03:46] 2025-10-12 13:03:13,908 | INFO     | task id: 46676269
[2025-10-12 09:03:46] 2025-10-12 13:03:13,908 | INFO     | errors: (none)
[2025-10-12 09:03:46] 2025-10-12 13:03:13,908 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:03:46] 2025-10-12 13:03:13,909 | INFO     | pilot state: finished 
[2025-10-12 09:03:46] 2025-10-12 13:03:13,909 | INFO     | transexitcode: 0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,909 | INFO     | exeerrorcode: 0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,909 | INFO     | exeerrordiag: 
[2025-10-12 09:03:46] 2025-10-12 13:03:13,909 | INFO     | exitcode: 0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,909 | INFO     | exitmsg: OK
[2025-10-12 09:03:46] 2025-10-12 13:03:13,910 | INFO     | cpuconsumptiontime: 42631 s
[2025-10-12 09:03:46] 2025-10-12 13:03:13,910 | INFO     | nevents: 400
[2025-10-12 09:03:46] 2025-10-12 13:03:13,910 | INFO     | neventsw: 0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,910 | INFO     | pid: 12543
[2025-10-12 09:03:46] 2025-10-12 13:03:13,910 | INFO     | pgrp: 12543
[2025-10-12 09:03:46] 2025-10-12 13:03:13,910 | INFO     | corecount: 12
[2025-10-12 09:03:46] 2025-10-12 13:03:13,911 | INFO     | event service: False
[2025-10-12 09:03:46] 2025-10-12 13:03:13,911 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 11: 2349152, 3985: 2374965, 3986: 2384147, 3995: 2384285}
[2025-10-12 09:03:46] 2025-10-12 13:03:13,911 | INFO     | --------------------------------------------------
[2025-10-12 09:03:46] 2025-10-12 13:03:13,911 | INFO     | 
[2025-10-12 09:03:46] 2025-10-12 13:03:13,911 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 09:03:46] 2025-10-12 13:03:13,936 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,937 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,937 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,937 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:03:46] 2025-10-12 13:03:13,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:03:46] 2025-10-12 13:03:13,940 | INFO     | job 6839636969 has completed (purged errors)
[2025-10-12 09:03:46] 2025-10-12 13:03:13,940 | INFO     | overall cleanup function is called
[2025-10-12 09:03:46] 2025-10-12 13:03:14,948 | INFO     | --- collectZombieJob: --- 10, [12543]
[2025-10-12 09:03:46] 2025-10-12 13:03:14,948 | INFO     | zombie collector waiting for pid 12543
[2025-10-12 09:03:46] 2025-10-12 13:03:14,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:03:46] 2025-10-12 13:03:14,949 | INFO     | collected zombie processes
[2025-10-12 09:03:46] 2025-10-12 13:03:14,949 | INFO     | will attempt to kill all subprocesses of pid=12543
[2025-10-12 09:03:46] 2025-10-12 13:03:15,039 | INFO     | process IDs to be killed: [12543] (in reverse order)
[2025-10-12 09:03:46] 2025-10-12 13:03:15,092 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:03:46] 2025-10-12 13:03:15,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:03:46] 2025-10-12 13:03:15,096 | INFO     | did not find any defunct processes belonging to 12543
[2025-10-12 09:03:46] 2025-10-12 13:03:15,099 | INFO     | did not find any defunct processes belonging to 12543
[2025-10-12 09:03:46] 2025-10-12 13:03:15,099 | INFO     | ready for new job
[2025-10-12 09:03:46] 2025-10-12 13:03:15,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:03:46] 2025-10-12 13:03:15,101 | INFO     | ***************************************
[2025-10-12 09:03:46] 2025-10-12 13:03:15,101 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:03:46] 2025-10-12 13:03:15,101 | INFO     | ***************************************
[2025-10-12 09:03:46] 2025-10-12 13:03:15,101 | INFO     | 
[2025-10-12 09:03:46] 2025-10-12 13:03:15,102 | INFO     | architecture information:
[2025-10-12 09:03:46] 2025-10-12 13:03:15,103 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:03:46] 2025-10-12 13:03:15,119 | INFO     | cat /etc/os-release:
[2025-10-12 09:03:46] NAME="CentOS Linux"
[2025-10-12 09:03:46] VERSION="7 (Core)"
[2025-10-12 09:03:46] ID="centos"
[2025-10-12 09:03:46] ID_LIKE="rhel fedora"
[2025-10-12 09:03:46] VERSION_ID="7"
[2025-10-12 09:03:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:03:46] ANSI_COLOR="0;31"
[2025-10-12 09:03:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:03:46] HOME_URL="https://www.centos.org/"
[2025-10-12 09:03:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:03:46] 
[2025-10-12 09:03:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:03:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:03:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:03:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:03:46] 
[2025-10-12 09:03:46] 2025-10-12 13:03:15,119 | INFO     | ***************************************
[2025-10-12 09:03:46] 2025-10-12 13:03:15,622 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 09:03:46] 2025-10-12 13:03:15,638 | INFO     | sufficient remaining disk space (18706595840 B)
[2025-10-12 09:03:46] 2025-10-12 13:03:15,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:03:46] 2025-10-12 13:03:15,638 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:03:46] 2025-10-12 13:03:15,638 | INFO     | update_server=False
[2025-10-12 09:03:46] 2025-10-12 13:03:15,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:03:46] 2025-10-12 13:03:15,639 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:03:46] 2025-10-12 13:03:15,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:03:46] 2025-10-12 13:03:15,877 | INFO     | all job control threads have been joined
[2025-10-12 09:03:46] 2025-10-12 13:03:16,089 | INFO     | all payload control threads have been joined
[2025-10-12 09:03:46] 2025-10-12 13:03:16,357 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:03:46] 2025-10-12 13:03:16,358 | INFO     | aborting loop
[2025-10-12 09:03:46] 2025-10-12 13:03:16,644 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:16,703 | INFO     | all data control threads have been joined
[2025-10-12 09:03:46] 2025-10-12 13:03:16,762 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:16,782 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:16,883 | INFO     | [job] control thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,047 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,095 | INFO     | [payload] control thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,362 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,448 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,645 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,708 | INFO     | [data] control thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,873 | INFO     | [job] validate thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:17,976 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:18,079 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:18,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:03:46] 2025-10-12 13:03:19,594 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:19,645 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:25,706 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:03:46] 2025-10-12 13:03:26,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:03:46] 2025-10-12 13:03:28,459 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:03:46] 2025-10-12 13:03:28,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239049570112)>', '<ExcThread(monitor, started 140238357767936)>']
[2025-10-12 09:03:46] 2025-10-12 13:03:33,774 | INFO     | all workflow threads have been joined
[2025-10-12 09:03:46] 2025-10-12 13:03:33,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:03:46] 2025-10-12 13:03:33,775 | INFO     | traces error code: 0
[2025-10-12 09:03:46] 2025-10-12 13:03:33,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:03:46] 2025-10-12 13:03:46,008 | INFO     | PID=6166 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 09:03:46] 2025-10-12 13:03:46,008 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:03:46] 2025-10-12 13:03:46,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:03:46] 2025-10-12 13:03:46,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:03:46] 2025-10-12 13:03:46,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:03:46] 2025-10-12 13:03:46,008 | INFO     | [monitor] control thread has ended
[2025-10-12 09:03:46] 2025-10-12 13:03:46,101 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:03:46] 2025-10-12 13:03:46,105 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:03:46] 2025-10-12 13:03:46,108 [wrapper] pilotpid: 6166
[2025-10-12 09:03:46] 2025-10-12 13:03:46,111 [wrapper] Pilot exit status: 0
[2025-10-12 09:03:46] 2025-10-12 13:03:46,127 [wrapper] pandaids: 6839636969
[2025-10-12 09:03:46] 2025-10-12 13:03:46,165 [wrapper] cleanup supervisor_pilot 13176 6167
[2025-10-12 09:03:46] 2025-10-12 13:03:46,168 [wrapper] Test setup, not cleaning
[2025-10-12 09:03:46] 2025-10-12 13:03:46,172 [wrapper] apfmon messages muted
[2025-10-12 09:03:46] 2025-10-12 13:03:46,176 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:03:46] 2025-10-12 13:03:46,180 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:03:46]  *** Error codes and diagnostics ***
[2025-10-12 09:03:46]     "exeErrorCode": 0,
[2025-10-12 09:03:46]     "exeErrorDiag": "",
[2025-10-12 09:03:46]     "pilotErrorCode": 0,
[2025-10-12 09:03:46]     "pilotErrorDiag": "",
[2025-10-12 09:03:46]  *** Listing of results directory ***
[2025-10-12 09:03:46] total 410624
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:44 pilot3.tar.gz
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 02:52 queuedata.json
[2025-10-12 09:03:46] -rwx------ 1 boincer umatlas     36292 Oct 12 02:53 runpilot2-wrapper.sh
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas       100 Oct 12 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:03:46] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 07:56 run_atlas
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas       105 Oct 12 07:56 job.xml
[2025-10-12 09:03:46] -rw-r--r-- 2 boincer umatlas 220380074 Oct 12 07:56 EVNT.46676267._001222.pool.root.1
[2025-10-12 09:03:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 07:56 start_atlas.sh
[2025-10-12 09:03:46] drwxrwx--x 2 boincer umatlas      4096 Oct 12 07:56 shared
[2025-10-12 09:03:46] -rw-r--r-- 2 boincer umatlas    569686 Oct 12 07:56 input.tar.gz
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas         0 Oct 12 07:56 boinc_lockfile
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 07:56 pandaJob.out
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas    975520 Oct 12 07:56 agis_schedconf.cvmfs.json
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas   1560580 Oct 12 07:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:03:46] drwx------ 5 boincer umatlas      4096 Oct 12 07:56 pilot3
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas 194270186 Oct 12 09:02 HITS.46676269._073227.pool.root.1
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas       529 Oct 12 09:02 boinc_task_state.xml
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas      1063 Oct 12 09:03 memory_monitor_summary.json
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 09:03 init_data.xml
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas    378933 Oct 12 09:03 log.46676269._073227.job.log.tgz.1
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas      7853 Oct 12 09:03 heartbeat.json
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas        95 Oct 12 09:03 pilot_heartbeat.json
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas        27 Oct 12 09:03 wrapper_checkpoint.txt
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 09:03 boinc_mmap_file
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas       744 Oct 12 09:03 pilotlog.txt
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas    587966 Oct 12 09:03 log.46676269._073227.job.log.1
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas       357 Oct 12 09:03 output.list
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas       620 Oct 12 09:03 runtime_log
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas    983040 Oct 12 09:03 result.tar.gz
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas       659 Oct 12 09:03 TfmLDmH84R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxPTMDmS5ZVTo.diag
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 09:03 runtime_log.err
[2025-10-12 09:03:46] -rw-r--r-- 1 boincer umatlas     21973 Oct 12 09:03 stderr.txt
[2025-10-12 09:03:46] HITS file was successfully produced:
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas 194270186 Oct 12 09:02 shared/HITS.pool.root.1
[2025-10-12 09:03:46]  *** Contents of shared directory: ***
[2025-10-12 09:03:46] total 406476
[2025-10-12 09:03:46] -rw-r--r-- 2 boincer umatlas 220380074 Oct 12 07:56 ATLAS.root_0
[2025-10-12 09:03:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 07:56 start_atlas.sh
[2025-10-12 09:03:46] -rw-r--r-- 2 boincer umatlas    569686 Oct 12 07:56 input.tar.gz
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas 194270186 Oct 12 09:02 HITS.pool.root.1
[2025-10-12 09:03:46] -rw------- 1 boincer umatlas    983040 Oct 12 09:03 result.tar.gz
09:03:47 (2351): run_atlas exited; CPU time 42633.688237
09:03:47 (2351): called boinc_finish(0)

</stderr_txt>
]]>

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