Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
15:43:04 (31903): wrapper (7.7.26015): starting
15:43:04 (31903): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 15:43:04] Arguments: --nthreads 8
[2025-10-12 15:43:04] Threads: 8
[2025-10-12 15:43:04] Checking for CVMFS
[2025-10-12 15:43:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:43:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:43:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:43:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:43:04] 2.11.0.0 4686 824 38280 151621 0 1 201770 4096000 0 130560 0 8 29.032 27259 316 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 15:43:04] CVMFS is ok
[2025-10-12 15:43:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:43:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:43:04] Further information can be found at the LHC@home message board.
[2025-10-12 15:43:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:43:04] Checking for apptainer binary...
[2025-10-12 15:43:04] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 15:43:04] apptainer is not installed, using version from CVMFS
[2025-10-12 15:43:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:43:33] WARNING: Environment variable TMPDIR already has value [/tmp/job_10509730/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node019
[2025-10-12 15:43:33] apptainer works
[2025-10-12 15:43:33] Set ATHENA_PROC_NUMBER=8
[2025-10-12 15:43:33] Set ATHENA_CORE_NUMBER=8
[2025-10-12 15:43:33] Starting ATLAS job with PandaID=6839387160
[2025-10-12 15:43:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10509730/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:50:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:50:38]  protocol_id=None
[2025-10-12 16:50:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 16:50:38]  replicas=None
[2025-10-12 16:50:38]  scope=mc23_13p6TeV
[2025-10-12 16:50:38]  status=None
[2025-10-12 16:50:38]  status_code=0
[2025-10-12 16:50:38]  storage_token=
[2025-10-12 16:50:38]  surl=/tmp/job_10509730/atlas/pilot/slots/0/PanDA_Pilot-6839387160/log.46676269._071091.job.log.tgz.1
[2025-10-12 16:50:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/af/log.46676269._071091.job.log.tgz.1
[2025-10-12 16:50:38]  workdir=None
[2025-10-12 16:50:38] ]
[2025-10-12 16:50:38] 2025-10-12 14:49:50,961 | INFO     | transferring file log.46676269._071091.job.log.tgz.1 from /tmp/job_10509730/atlas/pilot/slots/0/PanDA_Pilot-6839387160/log.46676269._071091.job.log.tgz.1 to /tmp/j
[2025-10-12 16:50:38] 2025-10-12 14:49:50,961 | INFO     | executing command: /usr/bin/env mv /tmp/job_10509730/atlas/pilot/slots/0/PanDA_Pilot-6839387160/log.46676269._071091.job.log.tgz.1 /tmp/job_10509730/atlas/pilot/sl
[2025-10-12 16:50:38] 2025-10-12 14:49:50,970 | INFO     | adding to output.list: log.46676269._071091.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/af/log.46676269._071091.job.log.tg
[2025-10-12 16:50:38] 2025-10-12 14:49:50,971 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:50:38] 2025-10-12 14:49:50,971 | INFO     | summary of transferred files:
[2025-10-12 16:50:38] 2025-10-12 14:49:50,971 | INFO     |  -- lfn=log.46676269._071091.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:50:38] 2025-10-12 14:49:50,971 | INFO     | stage-out finished correctly
[2025-10-12 16:50:38] 2025-10-12 14:49:51,888 | INFO     | time since job start (3925s) is within the limit (172800.0s)
[2025-10-12 16:50:38] 2025-10-12 14:49:51,891 | INFO     | monitor loop #301: job 0:6839387160 is in state 'finished'
[2025-10-12 16:50:38] 2025-10-12 14:49:51,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:50:38] 2025-10-12 14:49:53,893 | INFO     | time since job start (3927s) is within the limit (172800.0s)
[2025-10-12 16:50:38] 2025-10-12 14:49:54,394 | INFO     | monitor loop #302: job 0:6839387160 is in state 'finished'
[2025-10-12 16:50:38] 2025-10-12 14:49:54,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:50:38] 2025-10-12 14:49:54,452 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:50:38] 2025-10-12 14:49:54,504 | INFO     | job 6839387160 has state=finished
[2025-10-12 16:50:38] 2025-10-12 14:49:54,504 | INFO     | preparing for final server update for job 6839387160 in state='finished'
[2025-10-12 16:50:38] 2025-10-12 14:49:54,504 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:50:38] 2025-10-12 14:49:54,504 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:50:38] 2025-10-12 14:49:54,504 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:50:38] 2025-10-12 14:49:54,504 | INFO     | job 6839387160 has finished - writing final server update
[2025-10-12 16:50:38] 2025-10-12 14:49:54,504 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:50:38] 2025-10-12 14:49:54,505 | INFO     | executing command: lscpu
[2025-10-12 16:50:38] 2025-10-12 14:49:54,547 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:50:38] 2025-10-12 14:49:55,898 | INFO     | time since job start (3929s) is within the limit (172800.0s)
[2025-10-12 16:50:38] 2025-10-12 14:49:55,899 | INFO     | 3935s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 16:50:38] 2025-10-12 14:49:56,572 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 16:50:38] 2025-10-12 14:49:56,580 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2609.1822812499995
[2025-10-12 16:50:38] 2025-10-12 14:49:56,603 | INFO     | using path: /tmp/job_10509730/atlas/pilot/slots/0/PanDA_Pilot-6839387160/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:50:38] 2025-10-12 14:49:56,603 | INFO     | extracted standard info from prmon json
[2025-10-12 16:50:38] 2025-10-12 14:49:56,603 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:50:38] 2025-10-12 14:49:56,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:50:38] 2025-10-12 14:49:56,604 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:50:38] 2025-10-12 14:49:56,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | sum of square deviations: 57407588.0
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | sum of deviations: 10615658834.0
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | mean x: 1760278755.0
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | mean y: 2401187.7192982454
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | -- intersect: -325503675044.19403
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | intersect: -325503675044.19403
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | chi2: 1.236524501022453
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | -- intersect: -325503675044.19403
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | current memory leak: 184.92 B/s (using 57 data points, chi2=1.24)
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | could have reported an average CPU frequency of 2516 MHz (6 samples)
[2025-10-12 16:50:38] 2025-10-12 14:49:56,605 | INFO     | ..............................
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . Timing measurements:
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . get job = 0 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . initial setup = 5 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . payload setup = 59 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . stage-in = 0 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . payload execution = 3848 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . stage-out = 0 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | . log creation = 0 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,606 | INFO     | ..............................
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | 
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | job summary report
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | --------------------------------------------------
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | PanDA job id: 6839387160
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | task id: 46676269
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | errors: (none)
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | pilot state: finished 
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | transexitcode: 0
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | exeerrorcode: 0
[2025-10-12 16:50:38] 2025-10-12 14:49:56,991 | INFO     | exeerrordiag: 
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | exitcode: 0
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | exitmsg: OK
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | cpuconsumptiontime: 24182 s
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | nevents: 400
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | neventsw: 0
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | pid: 25471
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | pgrp: 25471
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | corecount: 8
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | event service: False
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | sizes: {0: 2348984, 3: 2349246, 11: 2349274, 3911: 2375087, 3912: 2384115, 3915: 2384171, 3917: 2384493}
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | --------------------------------------------------
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | 
[2025-10-12 16:50:38] 2025-10-12 14:49:56,992 | INFO     | executing command: ls -lF /tmp/job_10509730/atlas/pilot/slots/0
[2025-10-12 16:50:38] 2025-10-12 14:49:57,003 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,003 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,003 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | job 6839387160 has completed (purged errors)
[2025-10-12 16:50:38] 2025-10-12 14:49:57,004 | INFO     | overall cleanup function is called
[2025-10-12 16:50:38] 2025-10-12 14:49:58,010 | INFO     | --- collectZombieJob: --- 10, [25471]
[2025-10-12 16:50:38] 2025-10-12 14:49:58,010 | INFO     | zombie collector waiting for pid 25471
[2025-10-12 16:50:38] 2025-10-12 14:49:58,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:50:38] 2025-10-12 14:49:58,010 | INFO     | collected zombie processes
[2025-10-12 16:50:38] 2025-10-12 14:49:58,010 | INFO     | will attempt to kill all subprocesses of pid=25471
[2025-10-12 16:50:38] 2025-10-12 14:49:58,185 | INFO     | process IDs to be killed: [25471] (in reverse order)
[2025-10-12 16:50:38] 2025-10-12 14:49:58,237 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:50:38] 2025-10-12 14:49:58,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:50:38] 2025-10-12 14:49:58,243 | INFO     | did not find any defunct processes belonging to 25471
[2025-10-12 16:50:38] 2025-10-12 14:49:58,249 | INFO     | did not find any defunct processes belonging to 25471
[2025-10-12 16:50:38] 2025-10-12 14:49:58,249 | INFO     | ready for new job
[2025-10-12 16:50:38] 2025-10-12 14:49:58,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:50:38] 2025-10-12 14:49:58,250 | INFO     | ***************************************
[2025-10-12 16:50:38] 2025-10-12 14:49:58,250 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:50:38] 2025-10-12 14:49:58,250 | INFO     | ***************************************
[2025-10-12 16:50:38] 2025-10-12 14:49:58,250 | INFO     | 
[2025-10-12 16:50:38] 2025-10-12 14:49:58,265 | INFO     | architecture information:
[2025-10-12 16:50:38] 2025-10-12 14:49:58,265 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:50:38] 2025-10-12 14:49:58,272 | INFO     | cat /etc/os-release:
[2025-10-12 16:50:38] NAME="CentOS Linux"
[2025-10-12 16:50:38] VERSION="7 (Core)"
[2025-10-12 16:50:38] ID="centos"
[2025-10-12 16:50:38] ID_LIKE="rhel fedora"
[2025-10-12 16:50:38] VERSION_ID="7"
[2025-10-12 16:50:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:50:38] ANSI_COLOR="0;31"
[2025-10-12 16:50:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:50:38] HOME_URL="https://www.centos.org/"
[2025-10-12 16:50:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:50:38] 
[2025-10-12 16:50:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:50:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:50:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:50:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:50:38] 
[2025-10-12 16:50:38] 2025-10-12 14:49:58,272 | INFO     | ***************************************
[2025-10-12 16:50:38] 2025-10-12 14:49:58,775 | INFO     | executing command: df -mP /tmp/job_10509730/atlas/pilot/slots/0
[2025-10-12 16:50:38] 2025-10-12 14:49:58,783 | INFO     | sufficient remaining disk space (227657383936 B)
[2025-10-12 16:50:38] 2025-10-12 14:49:58,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:50:38] 2025-10-12 14:49:58,783 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:50:38] 2025-10-12 14:49:58,783 | INFO     | update_server=False
[2025-10-12 16:50:38] 2025-10-12 14:49:58,783 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:50:38] 2025-10-12 14:49:58,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:50:38] 2025-10-12 14:49:58,784 | INFO     | aborting loop
[2025-10-12 16:50:38] 2025-10-12 14:49:59,036 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:50:38] 2025-10-12 14:49:59,330 | INFO     | all data control threads have been joined
[2025-10-12 16:50:38] 2025-10-12 14:49:59,789 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:49:59,789 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:49:59,810 | INFO     | all job control threads have been joined
[2025-10-12 16:50:38] 2025-10-12 14:49:59,878 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:49:59,951 | INFO     | [job] validate thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:00,025 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:00,094 | INFO     | all payload control threads have been joined
[2025-10-12 16:50:38] 2025-10-12 14:50:00,221 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:00,336 | INFO     | [data] control thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:00,467 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:00,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:50:38] 2025-10-12 14:50:00,544 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:00,815 | INFO     | [job] control thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:00,831 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:01,041 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:01,099 | INFO     | [payload] control thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:01,194 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:01,669 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:50:38] 2025-10-12 14:50:02,675 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:04,515 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:50:38] 2025-10-12 14:50:29,196 | INFO     | PID=9719 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 16:50:38] 2025-10-12 14:50:29,196 | INFO     | .. there are 4 such processes running
[2025-10-12 16:50:38] 2025-10-12 14:50:29,196 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:50:38] 2025-10-12 14:50:29,196 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:50:38] 2025-10-12 14:50:29,196 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:50:38] 2025-10-12 14:50:31,412 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:50:38] 2025-10-12 14:50:33,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064669440)>']
[2025-10-12 16:50:38] 2025-10-12 14:50:33,216 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:50:38] 2025-10-12 14:50:33,216 | INFO     | [monitor] control thread has ended
[2025-10-12 16:50:38] 2025-10-12 14:50:38,090 | INFO     | all workflow threads have been joined
[2025-10-12 16:50:38] 2025-10-12 14:50:38,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:50:38] 2025-10-12 14:50:38,090 | INFO     | traces error code: 0
[2025-10-12 16:50:38] 2025-10-12 14:50:38,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:50:38] 2025-10-12 14:50:38,150 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:50:38] 2025-10-12 14:50:38,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:50:38] 2025-10-12 14:50:38,153 [wrapper] pilotpid: 9719
[2025-10-12 16:50:38] 2025-10-12 14:50:38,154 [wrapper] Pilot exit status: 0
[2025-10-12 16:50:38] 2025-10-12 14:50:38,158 [wrapper] pandaids: 6839387160
[2025-10-12 16:50:38] 2025-10-12 14:50:38,197 [wrapper] cleanup supervisor_pilot 22446 9721
[2025-10-12 16:50:38] 2025-10-12 14:50:38,198 [wrapper] Test setup, not cleaning
[2025-10-12 16:50:38] 2025-10-12 14:50:38,200 [wrapper] apfmon messages muted
[2025-10-12 16:50:38] 2025-10-12 14:50:38,201 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:50:38] 2025-10-12 14:50:38,202 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:50:38]  *** Error codes and diagnostics ***
[2025-10-12 16:50:38]     "exeErrorCode": 0,
[2025-10-12 16:50:38]     "exeErrorDiag": "",
[2025-10-12 16:50:38]     "pilotErrorCode": 0,
[2025-10-12 16:50:38]     "pilotErrorDiag": "",
[2025-10-12 16:50:38]  *** Listing of results directory ***
[2025-10-12 16:50:38] total 414952
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user    557409 Oct 12 06:11 pilot3.tar.gz
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      5112 Oct 12 06:14 queuedata.json
[2025-10-12 16:50:38] -rwx------ 1 mf493845 unix-user     36292 Oct 12 06:15 runpilot2-wrapper.sh
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user       100 Oct 12 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:50:38] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 14:46 run_atlas
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user       105 Oct 12 14:46 job.xml
[2025-10-12 16:50:38] -rw-r--r-- 2 mf493845 unix-user 221260604 Oct 12 15:43 EVNT.46676267._003286.pool.root.1
[2025-10-12 16:50:38] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 15:43 start_atlas.sh
[2025-10-12 16:50:38] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 15:43 shared
[2025-10-12 16:50:38] -rw-r--r-- 2 mf493845 unix-user    569683 Oct 12 15:43 input.tar.gz
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      6392 Oct 12 15:43 init_data.xml
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user         0 Oct 12 15:43 boinc_setup_complete
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      8192 Oct 12 15:43 boinc_mmap_file
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user         0 Oct 12 15:43 boinc_lockfile
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      2551 Oct 12 15:43 pandaJob.out
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user    975528 Oct 12 15:44 agis_schedconf.cvmfs.json
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user   1560580 Oct 12 15:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:50:38] drwx------ 5 mf493845 unix-user       440 Oct 12 15:44 pilot3
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user 197965774 Oct 12 16:49 HITS.46676269._071091.pool.root.1
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user        95 Oct 12 16:49 pilot_heartbeat.json
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      1019 Oct 12 16:49 memory_monitor_summary.json
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user    315092 Oct 12 16:49 log.46676269._071091.job.log.tgz.1
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      7784 Oct 12 16:49 heartbeat.json
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      4834 Oct 12 16:50 pilotlog.txt
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user    592107 Oct 12 16:50 log.46676269._071091.job.log.1
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user       357 Oct 12 16:50 output.list
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user       620 Oct 12 16:50 runtime_log
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user    921600 Oct 12 16:50 result.tar.gz
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user      9076 Oct 12 16:50 runtime_log.err
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user       644 Oct 12 16:50 07tMDmUf2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwbiNDmUcZ4mm.diag
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user     22258 Oct 12 16:50 stderr.txt
[2025-10-12 16:50:38] HITS file was successfully produced:
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user 197965774 Oct 12 16:49 shared/HITS.pool.root.1
[2025-10-12 16:50:38]  *** Contents of shared directory: ***
[2025-10-12 16:50:38] total 410880
[2025-10-12 16:50:38] -rw-r--r-- 2 mf493845 unix-user 221260604 Oct 12 15:43 ATLAS.root_0
[2025-10-12 16:50:38] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 15:43 start_atlas.sh
[2025-10-12 16:50:38] -rw-r--r-- 2 mf493845 unix-user    569683 Oct 12 15:43 input.tar.gz
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user 197965774 Oct 12 16:49 HITS.pool.root.1
[2025-10-12 16:50:38] -rw------- 1 mf493845 unix-user    921600 Oct 12 16:50 result.tar.gz
16:50:40 (31903): run_atlas exited; CPU time 24282.362486
16:50:40 (31903): called boinc_finish(0)

</stderr_txt>
]]>

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