Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
12:56:26 (4117716): wrapper (7.7.26015): starting
12:56:26 (4117716): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:56:26] Arguments: --nthreads 12
[2025-10-12 12:56:26] Threads: 12
[2025-10-12 12:56:26] Checking for CVMFS
[2025-10-12 12:56:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:56:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:56:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:56:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:56:27] 2.11.0.0 3299214 3090 87480 151620 2 188 5379686 6144000 14161 130560 0 60588612 100.000 110212 194 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 12:56:27] CVMFS is ok
[2025-10-12 12:56:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:56:27] Checking for apptainer binary...
[2025-10-12 12:56:27] apptainer is not installed, using version from CVMFS
[2025-10-12 12:56:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:56:27] radiat0r
[2025-10-12 12:56:27] apptainer works
[2025-10-12 12:56:27] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:56:27] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:56:27] Starting ATLAS job with PandaID=6839591907
[2025-10-12 12:56:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:44:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:44:56] 2025-10-12 13:44:12,728 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6839591907/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:44:56] 2025-10-12 13:44:12,730 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6839591907/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:44:56] 2025-10-12 13:44:12,730 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 13:44:56] 2025-10-12 13:44:12,731 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 13:44:56] 2025-10-12 13:44:12,731 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4359023 B
[2025-10-12 13:44:56] 2025-10-12 13:44:12,732 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15538 B
[2025-10-12 13:44:56] 2025-10-12 13:44:12,732 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-10-12 13:44:56] 2025-10-12 13:44:12,759 | INFO     | sufficient remaining disk space (1724770156544 B)
[2025-10-12 13:44:56] 2025-10-12 13:44:12,760 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 13:44:56] 2025-10-12 13:44:12,761 | INFO     | size of work directory /var/lib/boinc/slots/9/PanDA_Pilot-6839591907: 4644483 B (within 2537553920 B limit)
[2025-10-12 13:44:56] 2025-10-12 13:44:12,761 | INFO     | pfn file=/var/lib/boinc/slots/9/PanDA_Pilot-6839591907/HITS.46676269._073009.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 13:44:56] 2025-10-12 13:44:12,761 | INFO     | total size of present files: 0 B (workdir size: 4644483 B)
[2025-10-12 13:44:56] 2025-10-12 13:44:12,761 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/9/PanDA_Pilot-6839591907/HITS.46676269._073009.pool.root.1 since it does not exist
[2025-10-12 13:44:56] 2025-10-12 13:44:13,562 | INFO     | number of running child processes to parent process 4135858: 1
[2025-10-12 13:44:56] 2025-10-12 13:44:13,563 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:44:56] 2025-10-12 13:44:13,583 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:44:56] 2025-10-12 13:44:13,671 | INFO     | time since job start (2852s) is within the limit (172800.0s)
[2025-10-12 13:44:56] 2025-10-12 13:44:15,254 | INFO     | job 6839591907 has state=finished
[2025-10-12 13:44:56] 2025-10-12 13:44:15,254 | INFO     | preparing for final server update for job 6839591907 in state='finished'
[2025-10-12 13:44:56] 2025-10-12 13:44:15,255 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:44:56] 2025-10-12 13:44:15,255 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:44:56] 2025-10-12 13:44:15,255 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:44:56] 2025-10-12 13:44:15,256 | INFO     | job 6839591907 has finished - writing final server update
[2025-10-12 13:44:56] 2025-10-12 13:44:15,256 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:44:56] 2025-10-12 13:44:15,257 | INFO     | executing command: lscpu
[2025-10-12 13:44:56] 2025-10-12 13:44:15,450 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:44:56] 2025-10-12 13:44:15,687 | INFO     | time since job start (2854s) is within the limit (172800.0s)
[2025-10-12 13:44:56] 2025-10-12 13:44:16,066 | INFO     | monitor loop #199: job 0:6839591907 is in state 'finished'
[2025-10-12 13:44:56] 2025-10-12 13:44:16,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:44:56] 2025-10-12 13:44:17,691 | INFO     | time since job start (2856s) is within the limit (172800.0s)
[2025-10-12 13:44:56] 2025-10-12 13:44:18,569 | INFO     | monitor loop #200: job 0:6839591907 is in state 'finished'
[2025-10-12 13:44:56] 2025-10-12 13:44:18,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:44:56] 2025-10-12 13:44:19,694 | INFO     | time since job start (2858s) is within the limit (172800.0s)
[2025-10-12 13:44:56] 2025-10-12 13:44:21,073 | INFO     | monitor loop #201: job 0:6839591907 is in state 'finished'
[2025-10-12 13:44:56] 2025-10-12 13:44:21,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:44:56] 2025-10-12 13:44:21,699 | INFO     | time since job start (2860s) is within the limit (172800.0s)
[2025-10-12 13:44:56] 2025-10-12 13:44:22,605 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 13:44:56] 2025-10-12 13:44:22,665 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2388.485726562502
[2025-10-12 13:44:56] 2025-10-12 13:44:22,737 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6839591907/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:44:56] 2025-10-12 13:44:22,737 | INFO     | extracted standard info from prmon json
[2025-10-12 13:44:56] 2025-10-12 13:44:22,738 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:44:56] 2025-10-12 13:44:22,738 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:44:56] 2025-10-12 13:44:22,738 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:44:56] 2025-10-12 13:44:22,738 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:44:56] 2025-10-12 13:44:22,740 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:44:56] 2025-10-12 13:44:22,740 | INFO     | sum of square deviations: 19832930.0
[2025-10-12 13:44:56] 2025-10-12 13:44:22,740 | INFO     | sum of deviations: 263501059.50000003
[2025-10-12 13:44:56] 2025-10-12 13:44:22,740 | INFO     | mean x: 1760275327.5
[2025-10-12 13:44:56] 2025-10-12 13:44:22,740 | INFO     | mean y: 2662890.175
[2025-10-12 13:44:56] 2025-10-12 13:44:22,740 | INFO     | -- intersect: -23384421812.284977
[2025-10-12 13:44:56] 2025-10-12 13:44:22,741 | INFO     | intersect: -23384421812.284977
[2025-10-12 13:44:56] 2025-10-12 13:44:22,741 | INFO     | chi2: 0.0006381517240026239
[2025-10-12 13:44:56] 2025-10-12 13:44:22,741 | INFO     | -- intersect: -23384421812.284977
[2025-10-12 13:44:56] 2025-10-12 13:44:22,741 | INFO     | current memory leak: 13.29 B/s (using 40 data points, chi2=0.00)
[2025-10-12 13:44:56] 2025-10-12 13:44:22,741 | INFO     | could have reported an average CPU frequency of 2338 MHz (5 samples)
[2025-10-12 13:44:56] 2025-10-12 13:44:22,741 | INFO     | ..............................
[2025-10-12 13:44:56] 2025-10-12 13:44:22,741 | INFO     | . Timing measurements:
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | . get job = 0 s
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | . initial setup = 1 s
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | . payload setup = 7 s
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | . stage-in = 0 s
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | . payload execution = 2820 s
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | . stage-out = 0 s
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | . log creation = 0 s
[2025-10-12 13:44:56] 2025-10-12 13:44:22,742 | INFO     | ..............................
[2025-10-12 13:44:56] 2025-10-12 13:44:23,322 | INFO     | 
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | job summary report
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | --------------------------------------------------
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | PanDA job id: 6839591907
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | task id: 46676269
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | errors: (none)
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | pilot state: finished 
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | transexitcode: 0
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | exeerrorcode: 0
[2025-10-12 13:44:56] 2025-10-12 13:44:23,323 | INFO     | exeerrordiag: 
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | exitcode: 0
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | exitmsg: OK
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | cpuconsumptiontime: 30297 s
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | nevents: 400
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | neventsw: 0
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | pid: 4135858
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | pgrp: 4135858
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | corecount: 12
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | event service: False
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | sizes: {0: 2348857, 7: 2349119, 11: 2349147, 2831: 2374478, 2832: 2374477, 2833: 2383531, 2835: 2383743, 2844: 2383969}
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | --------------------------------------------------
[2025-10-12 13:44:56] 2025-10-12 13:44:23,324 | INFO     | 
[2025-10-12 13:44:56] 2025-10-12 13:44:23,325 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-10-12 13:44:56] 2025-10-12 13:44:23,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,351 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,351 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | job 6839591907 has completed (purged errors)
[2025-10-12 13:44:56] 2025-10-12 13:44:23,353 | INFO     | overall cleanup function is called
[2025-10-12 13:44:56] 2025-10-12 13:44:24,362 | INFO     | --- collectZombieJob: --- 10, [4135858]
[2025-10-12 13:44:56] 2025-10-12 13:44:24,363 | INFO     | zombie collector waiting for pid 4135858
[2025-10-12 13:44:56] 2025-10-12 13:44:24,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:44:56] 2025-10-12 13:44:24,363 | INFO     | collected zombie processes
[2025-10-12 13:44:56] 2025-10-12 13:44:24,363 | INFO     | will attempt to kill all subprocesses of pid=4135858
[2025-10-12 13:44:56] 2025-10-12 13:44:25,195 | INFO     | process IDs to be killed: [4135858] (in reverse order)
[2025-10-12 13:44:56] 2025-10-12 13:44:25,464 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:44:56] 2025-10-12 13:44:25,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:44:56] 2025-10-12 13:44:25,492 | INFO     | did not find any defunct processes belonging to 4135858
[2025-10-12 13:44:56] 2025-10-12 13:44:25,518 | INFO     | did not find any defunct processes belonging to 4135858
[2025-10-12 13:44:56] 2025-10-12 13:44:25,518 | INFO     | ready for new job
[2025-10-12 13:44:56] 2025-10-12 13:44:25,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:44:56] 2025-10-12 13:44:25,521 | INFO     | ***************************************
[2025-10-12 13:44:56] 2025-10-12 13:44:25,521 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:44:56] 2025-10-12 13:44:25,521 | INFO     | ***************************************
[2025-10-12 13:44:56] 2025-10-12 13:44:25,521 | INFO     | 
[2025-10-12 13:44:56] 2025-10-12 13:44:25,561 | INFO     | architecture information:
[2025-10-12 13:44:56] 2025-10-12 13:44:25,562 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:44:56] 2025-10-12 13:44:25,588 | INFO     | cat /etc/os-release:
[2025-10-12 13:44:56] NAME="CentOS Linux"
[2025-10-12 13:44:56] VERSION="7 (Core)"
[2025-10-12 13:44:56] ID="centos"
[2025-10-12 13:44:56] ID_LIKE="rhel fedora"
[2025-10-12 13:44:56] VERSION_ID="7"
[2025-10-12 13:44:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:44:56] ANSI_COLOR="0;31"
[2025-10-12 13:44:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:44:56] HOME_URL="https://www.centos.org/"
[2025-10-12 13:44:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:44:56] 
[2025-10-12 13:44:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:44:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:44:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:44:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:44:56] 
[2025-10-12 13:44:56] 2025-10-12 13:44:25,588 | INFO     | ***************************************
[2025-10-12 13:44:56] 2025-10-12 13:44:26,091 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-10-12 13:44:56] 2025-10-12 13:44:26,120 | INFO     | sufficient remaining disk space (1724728213504 B)
[2025-10-12 13:44:56] 2025-10-12 13:44:26,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:44:56] 2025-10-12 13:44:26,120 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:44:56] 2025-10-12 13:44:26,121 | INFO     | update_server=False
[2025-10-12 13:44:56] 2025-10-12 13:44:26,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:44:56] 2025-10-12 13:44:26,563 | INFO     | all data control threads have been joined
[2025-10-12 13:44:56] 2025-10-12 13:44:26,762 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:44:56] 2025-10-12 13:44:27,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:44:56] 2025-10-12 13:44:27,087 | INFO     | aborting loop
[2025-10-12 13:44:56] 2025-10-12 13:44:27,088 | INFO     | all job control threads have been joined
[2025-10-12 13:44:56] 2025-10-12 13:44:27,122 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,246 | INFO     | all payload control threads have been joined
[2025-10-12 13:44:56] 2025-10-12 13:44:27,250 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,550 | INFO     | [job] validate thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,566 | INFO     | [data] control thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,598 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,611 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,674 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,740 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:27,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:44:56] 2025-10-12 13:44:27,926 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:28,090 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:28,094 | INFO     | [job] control thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:28,114 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:28,250 | INFO     | [payload] control thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:28,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:44:56] 2025-10-12 13:44:28,766 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:28,850 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:32,710 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:44:56] 2025-10-12 13:44:45,272 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:44:56] 2025-10-12 13:44:45,390 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723744831296)>', '<ExcThread(monitor, started 139723314022144)>']
[2025-10-12 13:44:56] 2025-10-12 13:44:50,416 | INFO     | all workflow threads have been joined
[2025-10-12 13:44:56] 2025-10-12 13:44:50,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:44:56] 2025-10-12 13:44:50,417 | INFO     | traces error code: 0
[2025-10-12 13:44:56] 2025-10-12 13:44:50,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:44:56] 2025-10-12 13:44:55,736 | INFO     | PID=4122471 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:44:56] 2025-10-12 13:44:55,736 | INFO     | .. there are 17 such processes running
[2025-10-12 13:44:56] 2025-10-12 13:44:55,737 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:44:56] 2025-10-12 13:44:55,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:44:56] 2025-10-12 13:44:55,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:44:56] 2025-10-12 13:44:55,737 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:44:56] 2025-10-12 13:44:55,737 | INFO     | [monitor] control thread has ended
[2025-10-12 13:44:56] 2025-10-12 13:44:55,908 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:44:56] 2025-10-12 13:44:55,911 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:44:56] 2025-10-12 13:44:55,914 [wrapper] pilotpid: 4122471
[2025-10-12 13:44:56] 2025-10-12 13:44:55,917 [wrapper] Pilot exit status: 0
[2025-10-12 13:44:56] 2025-10-12 13:44:55,928 [wrapper] pandaids: 6839591907
[2025-10-12 13:44:56] 2025-10-12 13:44:56,065 [wrapper] cleanup supervisor_pilot  325988 4122472
[2025-10-12 13:44:56] 2025-10-12 13:44:56,069 [wrapper] Test setup, not cleaning
[2025-10-12 13:44:56] 2025-10-12 13:44:56,072 [wrapper] apfmon messages muted
[2025-10-12 13:44:56] 2025-10-12 13:44:56,074 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:44:56] 2025-10-12 13:44:56,076 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:44:56]  *** Error codes and diagnostics ***
[2025-10-12 13:44:56]     "exeErrorCode": 0,
[2025-10-12 13:44:56]     "exeErrorDiag": "",
[2025-10-12 13:44:56]     "pilotErrorCode": 0,
[2025-10-12 13:44:56]     "pilotErrorDiag": "",
[2025-10-12 13:44:56]  *** Listing of results directory ***
[2025-10-12 13:44:56] total 405064
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:44 pilot3.tar.gz
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:45 queuedata.json
[2025-10-12 13:44:56] -rwx------ 1 boinc boinc     36292 Oct 12 06:45 runpilot2-wrapper.sh
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc       100 Oct 12 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:44:56] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 12:56 run_atlas
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc       105 Oct 12 12:56 job.xml
[2025-10-12 13:44:56] -rw-r--r-- 2 boinc boinc     15120 Oct 12 12:56 start_atlas.sh
[2025-10-12 13:44:56] drwxrwx--x 2 boinc boinc      4096 Oct 12 12:56 shared
[2025-10-12 13:44:56] -rw-r--r-- 2 boinc boinc    569683 Oct 12 12:56 input.tar.gz
[2025-10-12 13:44:56] -rw-r--r-- 2 boinc boinc 220873095 Oct 12 12:56 EVNT.46676267._004523.pool.root.1
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc         0 Oct 12 12:56 boinc_setup_complete
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc      9395 Oct 12 12:56 init_data.xml
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc         0 Oct 12 12:56 boinc_lockfile
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc      2550 Oct 12 12:56 pandaJob.out
[2025-10-12 13:44:56] -rw------- 1 boinc boinc    975512 Oct 12 12:56 agis_schedconf.cvmfs.json
[2025-10-12 13:44:56] -rw------- 1 boinc boinc   1560580 Oct 12 12:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:44:56] drwx------ 5 boinc boinc      4096 Oct 12 12:56 pilot3
[2025-10-12 13:44:56] -rw------- 1 boinc boinc 188406231 Oct 12 13:43 HITS.46676269._073009.pool.root.1
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc       530 Oct 12 13:43 boinc_task_state.xml
[2025-10-12 13:44:56] -rw------- 1 boinc boinc      1025 Oct 12 13:44 memory_monitor_summary.json
[2025-10-12 13:44:56] -rw------- 1 boinc boinc    364985 Oct 12 13:44 log.46676269._073009.job.log.tgz.1
[2025-10-12 13:44:56] -rw------- 1 boinc boinc      7738 Oct 12 13:44 heartbeat.json
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc      8192 Oct 12 13:44 boinc_mmap_file
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc        27 Oct 12 13:44 wrapper_checkpoint.txt
[2025-10-12 13:44:56] -rw------- 1 boinc boinc       823 Oct 12 13:44 pilotlog.txt
[2025-10-12 13:44:56] -rw------- 1 boinc boinc        95 Oct 12 13:44 pilot_heartbeat.json
[2025-10-12 13:44:56] -rw------- 1 boinc boinc    430208 Oct 12 13:44 log.46676269._073009.job.log.1
[2025-10-12 13:44:56] -rw------- 1 boinc boinc       357 Oct 12 13:44 output.list
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc       620 Oct 12 13:44 runtime_log
[2025-10-12 13:44:56] -rw------- 1 boinc boinc    819200 Oct 12 13:44 result.tar.gz
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc      8658 Oct 12 13:44 runtime_log.err
[2025-10-12 13:44:56] -rw------- 1 boinc boinc       643 Oct 12 13:44 3kTNDmI14R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1viNDm1JvgCo.diag
[2025-10-12 13:44:56] -rw-r--r-- 1 boinc boinc     22167 Oct 12 13:44 stderr.txt
[2025-10-12 13:44:56] HITS file was successfully produced:
[2025-10-12 13:44:56] -rw------- 1 boinc boinc 188406231 Oct 12 13:43 shared/HITS.pool.root.1
[2025-10-12 13:44:56]  *** Contents of shared directory: ***
[2025-10-12 13:44:56] total 401076
[2025-10-12 13:44:56] -rw-r--r-- 2 boinc boinc     15120 Oct 12 12:56 start_atlas.sh
[2025-10-12 13:44:56] -rw-r--r-- 2 boinc boinc    569683 Oct 12 12:56 input.tar.gz
[2025-10-12 13:44:56] -rw-r--r-- 2 boinc boinc 220873095 Oct 12 12:56 ATLAS.root_0
[2025-10-12 13:44:56] -rw------- 1 boinc boinc 188406231 Oct 12 13:43 HITS.pool.root.1
[2025-10-12 13:44:56] -rw------- 1 boinc boinc    819200 Oct 12 13:44 result.tar.gz
13:44:57 (4117716): run_atlas exited; CPU time 30457.888724
13:44:57 (4117716): called boinc_finish(0)

</stderr_txt>
]]>

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