Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:47:02 (3521219): wrapper (7.7.26015): starting
07:47:02 (3521219): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 07:47:02] Arguments: --nthreads 8
[2025-10-12 07:47:02] Threads: 8
[2025-10-12 07:47:02] Checking for CVMFS
[2025-10-12 07:47:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:47:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:47:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:47:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:47:03] 2.13.2.0 2038924 68527 228176 151619 1 442 28790179 32503809 69373 16776704 0 444867731 99.746 308799929 34634 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 07:47:03] CVMFS is ok
[2025-10-12 07:47:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:47:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:47:03] Further information can be found at the LHC@home message board.
[2025-10-12 07:47:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:47:03] Checking for apptainer binary...
[2025-10-12 07:47:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:47:03] Running /usr/bin/apptainer --version
[2025-10-12 07:47:03] apptainer version 1.4.3-1.el9
[2025-10-12 07:47:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:47:03] c8-7-1.aglt2.org
[2025-10-12 07:47:03] apptainer works
[2025-10-12 07:47:03] Set ATHENA_PROC_NUMBER=8
[2025-10-12 07:47:03] Set ATHENA_CORE_NUMBER=8
[2025-10-12 07:47:04] Starting ATLAS job with PandaID=6839592082
[2025-10-12 07:47:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:20:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:20:06] 2025-10-12 13:19:04,996 | INFO     | time since job start (5482s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:05,680 | INFO     | number of running child processes to parent process 3559007: 1
[2025-10-12 09:20:06] 2025-10-12 13:19:05,680 | INFO     | maximum number of monitored processes: 6
[2025-10-12 09:20:06] 2025-10-12 13:19:07,003 | INFO     | time since job start (5485s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:08,184 | INFO     | monitor loop #321: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:08,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:09,010 | INFO     | time since job start (5487s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:10,696 | INFO     | monitor loop #322: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:10,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:11,017 | INFO     | time since job start (5489s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:13,026 | INFO     | time since job start (5491s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:13,201 | INFO     | monitor loop #323: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:13,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:15,033 | INFO     | time since job start (5493s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:15,711 | INFO     | monitor loop #324: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:15,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:17,040 | INFO     | time since job start (5495s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:18,216 | INFO     | monitor loop #325: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:18,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:19,046 | INFO     | time since job start (5497s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:20,726 | INFO     | monitor loop #326: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:20,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:21,053 | INFO     | time since job start (5499s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:23,064 | INFO     | time since job start (5501s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:23,233 | INFO     | monitor loop #327: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:23,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:25,752 | INFO     | monitor loop #328: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:25,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:27,464 | INFO     | PID=3533156 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:20:06] 2025-10-12 13:19:27,464 | INFO     | .. there are 101 such processes running
[2025-10-12 09:20:06] 2025-10-12 13:19:28,257 | INFO     | monitor loop #329: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:28,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:28,465 | INFO     | time since job start (5506s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:30,476 | INFO     | time since job start (5508s) is within the limit (172800.0s)
[2025-10-12 09:20:06] 2025-10-12 13:19:30,761 | INFO     | monitor loop #330: job 0:6839592082 is in state 'finished'
[2025-10-12 09:20:06] 2025-10-12 13:19:30,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:20:06] 2025-10-12 13:19:31,055 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 09:20:06] 2025-10-12 13:19:31,067 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9946484375005
[2025-10-12 09:20:06] 2025-10-12 13:19:31,165 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6839592082/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:20:06] 2025-10-12 13:19:31,166 | INFO     | extracted standard info from prmon json
[2025-10-12 09:20:06] 2025-10-12 13:19:31,166 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:20:06] 2025-10-12 13:19:31,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:20:06] 2025-10-12 13:19:31,166 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:20:06] 2025-10-12 13:19:31,166 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:20:06] 2025-10-12 13:19:31,187 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | sum of square deviations: 170965965.37804896
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | sum of deviations: -2738096591.6341457
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | mean x: 1760272521.695122
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | mean y: 2505524.4146341463
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | -- intersect: 28194059213.728577
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | intersect: 28194059213.728577
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | chi2: 0.006108682302574437
[2025-10-12 09:20:06] 2025-10-12 13:19:31,188 | INFO     | -- intersect: 28194059213.728577
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | current memory leak: -16.02 B/s (using 82 data points, chi2=0.01)
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | could have reported an average CPU frequency of 3798 MHz (6 samples)
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | ..............................
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . Timing measurements:
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . get job = 0 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . initial setup = 3 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . payload setup = 23 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . stage-in = 0 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . payload execution = 5406 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . stage-out = 4 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | . log creation = 1 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,189 | INFO     | ..............................
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | 
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | job summary report
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | --------------------------------------------------
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | PanDA job id: 6839592082
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | task id: 46676269
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | errors: (none)
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | pilot state: finished 
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | transexitcode: 0
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | exeerrorcode: 0
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | exeerrordiag: 
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | exitcode: 0
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | exitmsg: OK
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | cpuconsumptiontime: 23360 s
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | nevents: 400
[2025-10-12 09:20:06] 2025-10-12 13:19:31,524 | INFO     | neventsw: 0
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | pid: 3559007
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | pgrp: 3559007
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | corecount: 8
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | event service: False
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | sizes: {0: 2348857, 1: 2348857, 11: 2348885, 16: 2349175, 22: 2349203, 5434: 2375860, 5439: 2384858, 5442: 2385038, 5470: 2385232}
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | --------------------------------------------------
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | 
[2025-10-12 09:20:06] 2025-10-12 13:19:31,525 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 09:20:06] 2025-10-12 13:19:31,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,681 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | job 6839592082 has completed (purged errors)
[2025-10-12 09:20:06] 2025-10-12 13:19:31,682 | INFO     | overall cleanup function is called
[2025-10-12 09:20:06] 2025-10-12 13:19:32,698 | INFO     | --- collectZombieJob: --- 10, [3559007]
[2025-10-12 09:20:06] 2025-10-12 13:19:32,698 | INFO     | zombie collector waiting for pid 3559007
[2025-10-12 09:20:06] 2025-10-12 13:19:32,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:20:06] 2025-10-12 13:19:32,698 | INFO     | collected zombie processes
[2025-10-12 09:20:06] 2025-10-12 13:19:32,698 | INFO     | will attempt to kill all subprocesses of pid=3559007
[2025-10-12 09:20:06] 2025-10-12 13:19:34,996 | INFO     | process IDs to be killed: [3559007] (in reverse order)
[2025-10-12 09:20:06] 2025-10-12 13:19:35,449 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:20:06] 2025-10-12 13:19:35,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:20:06] 2025-10-12 13:19:35,536 | INFO     | did not find any defunct processes belonging to 3559007
[2025-10-12 09:20:06] 2025-10-12 13:19:35,639 | INFO     | did not find any defunct processes belonging to 3559007
[2025-10-12 09:20:06] 2025-10-12 13:19:35,639 | INFO     | ready for new job
[2025-10-12 09:20:06] 2025-10-12 13:19:35,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:20:06] 2025-10-12 13:19:35,641 | INFO     | ***************************************
[2025-10-12 09:20:06] 2025-10-12 13:19:35,641 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:20:06] 2025-10-12 13:19:35,641 | INFO     | ***************************************
[2025-10-12 09:20:06] 2025-10-12 13:19:35,641 | INFO     | 
[2025-10-12 09:20:06] 2025-10-12 13:19:35,665 | INFO     | architecture information:
[2025-10-12 09:20:06] 2025-10-12 13:19:35,684 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:20:06] 2025-10-12 13:19:35,766 | INFO     | cat /etc/os-release:
[2025-10-12 09:20:06] NAME="CentOS Linux"
[2025-10-12 09:20:06] VERSION="7 (Core)"
[2025-10-12 09:20:06] ID="centos"
[2025-10-12 09:20:06] ID_LIKE="rhel fedora"
[2025-10-12 09:20:06] VERSION_ID="7"
[2025-10-12 09:20:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:20:06] ANSI_COLOR="0;31"
[2025-10-12 09:20:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:20:06] HOME_URL="https://www.centos.org/"
[2025-10-12 09:20:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:20:06] 
[2025-10-12 09:20:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:20:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:20:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:20:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:20:06] 
[2025-10-12 09:20:06] 2025-10-12 13:19:35,766 | INFO     | ***************************************
[2025-10-12 09:20:06] 2025-10-12 13:19:36,271 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 09:20:06] 2025-10-12 13:19:36,364 | INFO     | sufficient remaining disk space (91772420096 B)
[2025-10-12 09:20:06] 2025-10-12 13:19:36,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:20:06] 2025-10-12 13:19:36,365 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:20:06] 2025-10-12 13:19:36,365 | INFO     | update_server=False
[2025-10-12 09:20:06] 2025-10-12 13:19:36,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:20:06] 2025-10-12 13:19:36,380 | INFO     | all data control threads have been joined
[2025-10-12 09:20:06] 2025-10-12 13:19:36,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:20:06] 2025-10-12 13:19:36,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:20:06] 2025-10-12 13:19:36,849 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:20:06] 2025-10-12 13:19:36,849 | INFO     | aborting loop
[2025-10-12 09:20:06] 2025-10-12 13:19:36,897 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:20:06] 2025-10-12 13:19:37,379 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,385 | INFO     | [data] control thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,397 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,411 | INFO     | all payload control threads have been joined
[2025-10-12 09:20:06] 2025-10-12 13:19:37,515 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,516 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,537 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,546 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,637 | INFO     | all job control threads have been joined
[2025-10-12 09:20:06] 2025-10-12 13:19:37,843 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,855 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:37,889 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:38,418 | INFO     | [payload] control thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:38,432 | INFO     | [job] validate thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:38,462 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:38,679 | INFO     | [job] control thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:38,844 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:40,913 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:20:06] 2025-10-12 13:19:51,466 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:20:06] 2025-10-12 13:19:51,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140198595991360)>', '<ExcThread(monitor, started 140197698189056)>']
[2025-10-12 09:20:06] 2025-10-12 13:19:57,002 | INFO     | all workflow threads have been joined
[2025-10-12 09:20:06] 2025-10-12 13:19:57,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:20:06] 2025-10-12 13:19:57,002 | INFO     | traces error code: 0
[2025-10-12 09:20:06] 2025-10-12 13:19:57,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:20:06] 2025-10-12 13:20:04,535 | INFO     | PID=3533156 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:20:06] 2025-10-12 13:20:04,536 | INFO     | .. there are 101 such processes running
[2025-10-12 09:20:06] 2025-10-12 13:20:04,536 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:20:06] 2025-10-12 13:20:04,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:20:06] 2025-10-12 13:20:04,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:20:06] 2025-10-12 13:20:04,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:20:06] 2025-10-12 13:20:04,536 | INFO     | [monitor] control thread has ended
[2025-10-12 09:20:06] 2025-10-12 13:20:04,956 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:20:06] 2025-10-12 13:20:04,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:20:06] 2025-10-12 13:20:04,966 [wrapper] pilotpid: 3533156
[2025-10-12 09:20:06] 2025-10-12 13:20:04,978 [wrapper] Pilot exit status: 0
[2025-10-12 09:20:06] 2025-10-12 13:20:04,999 [wrapper] pandaids: 6839592082
[2025-10-12 09:20:06] 2025-10-12 13:20:05,308 [wrapper] cleanup supervisor_pilot  316796 3533157
[2025-10-12 09:20:06] 2025-10-12 13:20:05,311 [wrapper] Test setup, not cleaning
[2025-10-12 09:20:06] 2025-10-12 13:20:05,320 [wrapper] apfmon messages muted
[2025-10-12 09:20:06] 2025-10-12 13:20:05,335 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:20:06] 2025-10-12 13:20:05,345 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:20:06]  *** Error codes and diagnostics ***
[2025-10-12 09:20:06]     "exeErrorCode": 0,
[2025-10-12 09:20:06]     "exeErrorDiag": "",
[2025-10-12 09:20:06]     "pilotErrorCode": 0,
[2025-10-12 09:20:06]     "pilotErrorDiag": "",
[2025-10-12 09:20:06]  *** Listing of results directory ***
[2025-10-12 09:20:06] total 412588
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 02:44 pilot3.tar.gz
[2025-10-12 09:20:06] -rwx------. 1 boincer umatlas     36292 Oct 12 02:52 runpilot2-wrapper.sh
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 02:52 queuedata.json
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas       100 Oct 12 07:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:20:06] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 07:47 run_atlas
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas       105 Oct 12 07:47 job.xml
[2025-10-12 09:20:06] -rw-r--r--. 2 boincer umatlas 219541246 Oct 12 07:47 EVNT.46676267._002401.pool.root.1
[2025-10-12 09:20:06] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:47 start_atlas.sh
[2025-10-12 09:20:06] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 07:47 shared
[2025-10-12 09:20:06] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 07:47 input.tar.gz
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas         0 Oct 12 07:47 boinc_lockfile
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 07:47 pandaJob.out
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas    975520 Oct 12 07:47 agis_schedconf.cvmfs.json
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:20:06] drwx------. 5 boincer umatlas      4096 Oct 12 07:47 pilot3
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas      7160 Oct 12 09:11 init_data.xml
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas 196979936 Oct 12 09:18 HITS.46676269._073184.pool.root.1
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas       530 Oct 12 09:18 boinc_task_state.xml
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas      1048 Oct 12 09:18 memory_monitor_summary.json
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas    336227 Oct 12 09:18 log.46676269._073184.job.log.tgz.1
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas        95 Oct 12 09:19 pilot_heartbeat.json
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas      7796 Oct 12 09:19 heartbeat.json
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 09:20 boinc_mmap_file
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas        27 Oct 12 09:20 wrapper_checkpoint.txt
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas       824 Oct 12 09:20 pilotlog.txt
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas    695276 Oct 12 09:20 log.46676269._073184.job.log.1
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas       357 Oct 12 09:20 output.list
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas       620 Oct 12 09:20 runtime_log
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas   1054720 Oct 12 09:20 result.tar.gz
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas      8693 Oct 12 09:20 runtime_log.err
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas       654 Oct 12 09:20 Gs7NDmn74R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgPTMDmzj3ijm.diag
[2025-10-12 09:20:06] -rw-r--r--. 1 boincer umatlas     22322 Oct 12 09:20 stderr.txt
[2025-10-12 09:20:06] HITS file was successfully produced:
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas 196979936 Oct 12 09:18 shared/HITS.pool.root.1
[2025-10-12 09:20:06]  *** Contents of shared directory: ***
[2025-10-12 09:20:06] total 408376
[2025-10-12 09:20:06] -rw-r--r--. 2 boincer umatlas 219541246 Oct 12 07:47 ATLAS.root_0
[2025-10-12 09:20:06] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:47 start_atlas.sh
[2025-10-12 09:20:06] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 07:47 input.tar.gz
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas 196979936 Oct 12 09:18 HITS.pool.root.1
[2025-10-12 09:20:06] -rw-------. 1 boincer umatlas   1054720 Oct 12 09:20 result.tar.gz
09:20:07 (3521219): run_atlas exited; CPU time 23503.838884
09:20:07 (3521219): called boinc_finish(0)

</stderr_txt>
]]>

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