Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:01:42 (3560785): wrapper (7.7.26015): starting
23:01:42 (3560785): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 23:01:42] Arguments: --nthreads 4
[2025-10-12 23:01:42] Threads: 4
[2025-10-12 23:01:42] Checking for CVMFS
[2025-10-12 23:01:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:01:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:01:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:01:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:01:43] 2.9.2.0 2829015 1886 89120 151636 2 57 29755929 36864000 0 130560 0 1939644 99.993 68046 796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 23:01:43] CVMFS is ok
[2025-10-12 23:01:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:01:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:01:43] Further information can be found at the LHC@home message board.
[2025-10-12 23:01:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:01:43] Checking for apptainer binary...
[2025-10-12 23:01:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:01:43] Running /usr/bin/apptainer --version
[2025-10-12 23:01:43] apptainer version 1.4.1-1.1
[2025-10-12 23:01:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:01:43] thA369a
[2025-10-12 23:01:43] apptainer works
[2025-10-12 23:01:43] Set ATHENA_PROC_NUMBER=4
[2025-10-12 23:01:43] Set ATHENA_CORE_NUMBER=4
[2025-10-12 23:01:43] Starting ATLAS job with PandaID=6839591538
[2025-10-12 23:01:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:02:04]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:02:04] 2025-10-12 22:01:31,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:02:04] 2025-10-12 22:01:31,902 | INFO     | job 6839591538 has completed (purged errors)
[2025-10-13 00:02:04] 2025-10-12 22:01:31,902 | INFO     | overall cleanup function is called
[2025-10-13 00:02:04] 2025-10-12 22:01:32,908 | INFO     | --- collectZombieJob: --- 10, [3571104]
[2025-10-13 00:02:04] 2025-10-12 22:01:32,908 | INFO     | zombie collector waiting for pid 3571104
[2025-10-13 00:02:04] 2025-10-12 22:01:32,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:02:04] 2025-10-12 22:01:32,908 | INFO     | collected zombie processes
[2025-10-13 00:02:04] 2025-10-12 22:01:32,909 | INFO     | will attempt to kill all subprocesses of pid=3571104
[2025-10-13 00:02:04] 2025-10-12 22:01:32,953 | INFO     | process IDs to be killed: [3571104] (in reverse order)
[2025-10-13 00:02:04] 2025-10-12 22:01:32,978 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:02:04] 2025-10-12 22:01:32,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:02:04] 2025-10-12 22:01:32,980 | INFO     | did not find any defunct processes belonging to 3571104
[2025-10-13 00:02:04] 2025-10-12 22:01:32,982 | INFO     | did not find any defunct processes belonging to 3571104
[2025-10-13 00:02:04] 2025-10-12 22:01:32,982 | INFO     | ready for new job
[2025-10-13 00:02:04] 2025-10-12 22:01:32,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:02:04] 2025-10-12 22:01:32,982 | INFO     | ***************************************
[2025-10-13 00:02:04] 2025-10-12 22:01:32,982 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:02:04] 2025-10-12 22:01:32,982 | INFO     | ***************************************
[2025-10-13 00:02:04] 2025-10-12 22:01:32,982 | INFO     | 
[2025-10-13 00:02:04] 2025-10-12 22:01:32,983 | INFO     | architecture information:
[2025-10-13 00:02:04] 2025-10-12 22:01:32,983 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:02:04] 2025-10-12 22:01:32,992 | INFO     | cat /etc/os-release:
[2025-10-13 00:02:04] NAME="CentOS Linux"
[2025-10-13 00:02:04] VERSION="7 (Core)"
[2025-10-13 00:02:04] ID="centos"
[2025-10-13 00:02:04] ID_LIKE="rhel fedora"
[2025-10-13 00:02:04] VERSION_ID="7"
[2025-10-13 00:02:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:02:04] ANSI_COLOR="0;31"
[2025-10-13 00:02:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:02:04] HOME_URL="https://www.centos.org/"
[2025-10-13 00:02:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:02:04] 
[2025-10-13 00:02:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:02:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:02:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:02:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:02:04] 
[2025-10-13 00:02:04] 2025-10-12 22:01:32,992 | INFO     | ***************************************
[2025-10-13 00:02:04] 2025-10-12 22:01:33,495 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 00:02:04] 2025-10-12 22:01:33,507 | INFO     | sufficient remaining disk space (229303648256 B)
[2025-10-13 00:02:04] 2025-10-12 22:01:33,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:02:04] 2025-10-12 22:01:33,508 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:02:04] 2025-10-12 22:01:33,508 | INFO     | update_server=False
[2025-10-13 00:02:04] 2025-10-12 22:01:33,508 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:02:04] 2025-10-12 22:01:33,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:02:04] 2025-10-12 22:01:33,508 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:02:04] 2025-10-12 22:01:33,508 | INFO     | aborting loop
[2025-10-13 00:02:04] 2025-10-12 22:01:33,633 | INFO     | all payload control threads have been joined
[2025-10-13 00:02:04] 2025-10-12 22:01:34,405 | INFO     | all data control threads have been joined
[2025-10-13 00:02:04] 2025-10-12 22:01:34,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:02:04] 2025-10-12 22:01:34,513 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:34,514 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:34,514 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:34,518 | INFO     | all job control threads have been joined
[2025-10-13 00:02:04] 2025-10-12 22:01:34,602 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:34,633 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:34,639 | INFO     | [payload] control thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,079 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,106 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,111 | INFO     | [job] validate thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,231 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,411 | INFO     | [data] control thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,472 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,523 | INFO     | [job] control thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:35,990 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:36,461 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:36,981 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:02:04] 2025-10-12 22:01:40,988 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:02:04] 2025-10-12 22:01:47,876 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-10-13 00:02:04] 2025-10-12 22:01:52,677 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:02:04] 2025-10-12 22:01:54,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395534579520)>', '<ExcThread(monitor, started 140394822100736)>']
[2025-10-13 00:02:04] 2025-10-12 22:01:59,372 | INFO     | all workflow threads have been joined
[2025-10-13 00:02:04] 2025-10-12 22:01:59,373 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:02:04] 2025-10-12 22:01:59,374 | INFO     | traces error code: 0
[2025-10-13 00:02:04] 2025-10-12 22:01:59,374 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:02:04] 2025-10-12 22:02:04,443 | INFO     | PID=3564566 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 00:02:04] 2025-10-12 22:02:04,444 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:02:04] 2025-10-12 22:02:04,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:02:04] 2025-10-12 22:02:04,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:02:04] 2025-10-12 22:02:04,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:02:04] 2025-10-12 22:02:04,444 | INFO     | [monitor] control thread has ended
[2025-10-13 00:02:04] 2025-10-12 22:02:04,494 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:02:04] 2025-10-12 22:02:04,497 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:02:04] 2025-10-12 22:02:04,499 [wrapper] pilotpid: 3564566
[2025-10-13 00:02:04] 2025-10-12 22:02:04,501 [wrapper] Pilot exit status: 0
[2025-10-13 00:02:04] 2025-10-12 22:02:04,508 [wrapper] pandaids: 6839591538
[2025-10-13 00:02:04] 2025-10-12 22:02:04,525 [wrapper] cleanup supervisor_pilot 3583235 3564567
[2025-10-13 00:02:04] 2025-10-12 22:02:04,527 [wrapper] Test setup, not cleaning
[2025-10-13 00:02:04] 2025-10-12 22:02:04,529 [wrapper] apfmon messages muted
[2025-10-13 00:02:04] 2025-10-12 22:02:04,532 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:02:04] 2025-10-12 22:02:04,534 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:02:04]  *** Error codes and diagnostics ***
[2025-10-13 00:02:04]     "exeErrorCode": 0,
[2025-10-13 00:02:04]     "exeErrorDiag": "",
[2025-10-13 00:02:04]     "pilotErrorCode": 0,
[2025-10-13 00:02:04]     "pilotErrorDiag": "",
[2025-10-13 00:02:04]  *** Listing of results directory ***
[2025-10-13 00:02:04] total 408424
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:35 queuedata.json
[2025-10-13 00:02:04] -rwx------ 1 boinc boinc     36292 Oct 12 08:36 runpilot2-wrapper.sh
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:02:04] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:01 run_atlas
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:01 job.xml
[2025-10-13 00:02:04] -rw-r--r-- 2 boinc boinc 219089781 Oct 12 23:01 EVNT.46676267._004515.pool.root.1
[2025-10-13 00:02:04] -rw-r--r-- 2 boinc boinc    569682 Oct 12 23:01 input.tar.gz
[2025-10-13 00:02:04] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:01 start_atlas.sh
[2025-10-13 00:02:04] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:01 shared
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:01 boinc_setup_complete
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc      6443 Oct 12 23:01 init_data.xml
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:01 boinc_lockfile
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc      2550 Oct 12 23:01 pandaJob.out
[2025-10-13 00:02:04] -rw------- 1 boinc boinc    975536 Oct 12 23:01 agis_schedconf.cvmfs.json
[2025-10-13 00:02:04] -rw------- 1 boinc boinc   1560580 Oct 12 23:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:02:04] drwx------ 5 boinc boinc      4096 Oct 12 23:01 pilot3
[2025-10-13 00:02:04] -rw------- 1 boinc boinc        95 Oct 13 00:01 pilot_heartbeat.json
[2025-10-13 00:02:04] -rw------- 1 boinc boinc 193672330 Oct 13 00:01 HITS.46676269._072802.pool.root.1
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc       529 Oct 13 00:01 boinc_task_state.xml
[2025-10-13 00:02:04] -rw------- 1 boinc boinc      1014 Oct 13 00:01 memory_monitor_summary.json
[2025-10-13 00:02:04] -rw------- 1 boinc boinc    245027 Oct 13 00:01 log.46676269._072802.job.log.tgz.1
[2025-10-13 00:02:04] -rw------- 1 boinc boinc      7747 Oct 13 00:01 heartbeat.json
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc      8192 Oct 13 00:01 boinc_mmap_file
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc        27 Oct 13 00:01 wrapper_checkpoint.txt
[2025-10-13 00:02:04] -rw------- 1 boinc boinc       747 Oct 13 00:02 pilotlog.txt
[2025-10-13 00:02:04] -rw------- 1 boinc boinc    539820 Oct 13 00:02 log.46676269._072802.job.log.1
[2025-10-13 00:02:04] -rw------- 1 boinc boinc       357 Oct 13 00:02 output.list
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc       620 Oct 13 00:02 runtime_log
[2025-10-13 00:02:04] -rw------- 1 boinc boinc    808960 Oct 13 00:02 result.tar.gz
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc      8782 Oct 13 00:02 runtime_log.err
[2025-10-13 00:02:04] -rw------- 1 boinc boinc       658 Oct 13 00:02 HnMNDmzr4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmItiNDmxM6Wvn.diag
[2025-10-13 00:02:04] -rw-r--r-- 1 boinc boinc     11719 Oct 13 00:02 stderr.txt
[2025-10-13 00:02:04] HITS file was successfully produced:
[2025-10-13 00:02:04] -rw------- 1 boinc boinc 193672330 Oct 13 00:01 shared/HITS.pool.root.1
[2025-10-13 00:02:04]  *** Contents of shared directory: ***
[2025-10-13 00:02:04] total 404468
[2025-10-13 00:02:04] -rw-r--r-- 2 boinc boinc 219089781 Oct 12 23:01 ATLAS.root_0
[2025-10-13 00:02:04] -rw-r--r-- 2 boinc boinc    569682 Oct 12 23:01 input.tar.gz
[2025-10-13 00:02:04] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:01 start_atlas.sh
[2025-10-13 00:02:04] -rw------- 1 boinc boinc 193672330 Oct 13 00:01 HITS.pool.root.1
[2025-10-13 00:02:04] -rw------- 1 boinc boinc    808960 Oct 13 00:02 result.tar.gz
00:02:05 (3560785): run_atlas exited; CPU time 13406.012738
00:02:05 (3560785): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN